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Importin

From Wikipedia, the free encyclopedia
Protein family

Importin subunit alpha-5
Identifiers
SymbolKPNA1
NCBI gene3836
HGNC6394
OMIM600686
RefSeqNP_002255
UniProtP52294
Other data
LocusChr. 3q21.1
Search for
StructuresSwiss-model
DomainsInterPro
Importin subunit beta-1
Identifiers
SymbolKPNB1
NCBI gene3837
HGNC6400
OMIM602738
RefSeqNP_002256
UniProtQ14974
Other data
LocusChr. 17q21.32
Search for
StructuresSwiss-model
DomainsInterPro

Importin is a type ofkaryopherin[1] that transportsprotein molecules from thecell'scytoplasm to thenucleus. It does so by binding to specificrecognition sequences, callednuclear localization sequences (NLS).

Importin has two subunits, importin α and importin β. Members of the importin-β family can bind and transport cargo by themselves, or can formheterodimers with importin-α. As part of aheterodimer, importin-β mediates interactions with thepore complex, while importin-α acts as an adaptor protein to bind thenuclear localization signal (NLS) on the cargo. The NLS-Importin α-Importin βtrimer dissociates after binding toRanGTP inside thenucleus,[2] with the two importin proteins being recycled to thecytoplasm for further use.

Discovery

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Importin can exist as either aheterodimer of importin-α/β or as amonomer of Importin-β. Importin-α was first isolated in 1994 by a group includingEnno Hartmann, based at theMax Delbrück Center for Molecular Medicine.[1] The process of nuclear protein import had already been characterised in previous reviews,[3] but the key proteins involved had not been elucidated up until that point. A 60 kDacytosolic protein, essential for protein import into the nucleus, and with a 44%sequence identity toSRP1p, was purified fromXenopus eggs. It was cloned, sequenced and expressed inE.coli and in order to completely reconstitute signal dependent transport, had to be combined withRan(TC4). Other key stimulatory factors were also found in the study.[1]

Importin-β, unlike importin-α, has no directhomologues in yeast, but was purified as a 90-95 kDa protein and found to form aheterodimer with importin-α in a number of different cases. These included a study led by Michael Rexach[4]and further studies byDirk Görlich.[5] These groups found that importin-α requires another protein, importin-β to function, and that together they form a receptor fornuclear localization signals (NLS), thus allowing transport into thenucleus. Since these initial discoveries in 1994 and 1995, a host of Importin genes, such asIPO4 andIPO7, have been found that facilitate the import of slightly different cargo proteins, due to their differing structure and locality.

Structure

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Importin-α

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A large proportion of the importin-αadaptor protein is made up of severalarmadillo repeats (ARM) arranged intandem. These repeats can stack together to form a curved-shaped structure, which facilitates binding to theNLS of specific cargo proteins. The major NLS binding site is found towards theN-terminus, with a minor site being found at theC-terminus. As well as theARM structures, Importin-α also contains a 90amino acidN-terminal region, responsible for binding to Importin-β, known as the Importin-β binding (IBB)domain.[6] This is also a site of autoinhibition,[7] and is implicated in the release of cargo once importin-α reaches thenucleus.[8]

Importin-β

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Importin-β is the typical structure of a largersuperfamily ofkaryopherins. The basis of their structure is 18-20 tandem repeats of theHEAT motif. Each one of these repeats contains two antiparallelalpha helices linked by aturn, which stack together to form the overall structure of theprotein.[9]

In order to transport cargo into thenucleus, importin-β must associate with the nuclear pore complexes. It does this by forming weak, transientbonds withnucleoporins at their variousFG (Phe-Gly) motifs.Crystallographic analysis has shown that thesemotifs bind to importin-β at shallowhydrophobic pockets found on its surface.[10]

Nuclear protein import cycle

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The primary function of importin is to mediate the translocation ofproteins withnuclear localization signals into thenucleus, throughnuclear pore complexes (NPC), in a process known as the nuclear protein import cycle.

Cargo binding

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The first step of this cycle is the binding of cargo. Importin can perform this function as amonomeric importin-βprotein, but usually requires the presence of importin-α, which acts as anadaptor to cargo proteins (via interactions with theNLS). TheNLS is a sequence of basicamino acids that tags theprotein as cargo destined for thenucleus. A cargoprotein can contain either one or two of thesemotifs, which will bind to the major and/or minor binding sites on importin-α.[11]


Overview of the nuclear protein import cycle.

Cargo transport

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Once the cargo protein is bound, importin-β interacts with theNPC, and the complex diffuses into thenucleus from thecytoplasm. The rate ofdiffusion depends on both the concentration of importin-α present in the cytoplasm and also thebinding affinity of importin-α to the cargo. Once inside thenucleus, the complex interacts with theRas-family GTPase,Ran-GTP. This leads to the dissociation of the complex by altering theconformation of importin-β. Importin-β is left bound toRan-GTP, ready to be recycled.[11]

Cargo release

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Now that the importin-α/cargo complex is free of importin-β, the cargo protein can be released into thenucleus. TheN-terminal importin-β-binding (IBB) domain of importin-α contains an auto-regulatory region that mimics theNLS motif.[7] The release of importin-β frees this region and allows it to loop back and compete for binding with the cargo protein at the majorNLS-binding site. This competition leads to the release of theprotein. In some cases, specific release factors such asNup2 andNup50 can be employed to help release the cargo as well.[11]

Recycling

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Finally, in order to return to thecytoplasm, importin-α must associate with aRan-GTP/CAS (nuclear export factor) complex which facilitates its exit from thenucleus.CAS (cellular apoptosis susceptibility protein) is part of the importin-β superfamily ofkaryopherins and is defined as a nuclear export factor. Importin-β returns to thecytoplasm, still bound toRan-GTP. Once in thecytoplasm,Ran-GTP ishydrolysed byRanGAP, formingRan-GDP, and releasing the two importins for further activity. It is this hydrolysis ofGTP that provides the energy for the cycle as a whole. In thenucleus, aGEF will chargeRan with aGTP molecule, which is then hydrolysed by aGAP in thecytoplasm, as stated above. It is this activity ofRan that allows for the unidirectional transport ofproteins.[11]

Disease

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There are several disease states and pathologies that are associated withmutations or changes in expression of importin-α and importin-β.

Importins are vital regulatoryproteins during the processes ofgametogenesis andembryogenesis. As a result, a disruption in the expression patterns of importin-α has been shown to cause fertility defects inDrosophila melanogaster.[12]

There have also been studies that link altered importin-α to some cases ofcancer.Breast cancer studies have implicated atruncated form of importin-α in which theNLS binding domain is missing.[13] In addition, importin-α has been shown to transport thetumour suppressor gene,BRCA1 (breast cancer type 1 susceptibility protein), into thenucleus. The overexpression of importin-α has also been linked with poor survival rates seen in certainmelanoma patients.[14]

Importin activity is also associated with someviral pathologies. For instance, in the infection pathway of theEbola virus, a key step is the inhibition of the nuclear import ofPY-STAT1. This is achieved by the virus sequestering importin-α in thecytoplasm, meaning it can no longer bind its cargo at theNLS.[15] As a result, importin cannot function and the cargo protein stays in the cytoplasm.

Types of cargo

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Many different cargoproteins can be transported into thenucleus by importin. Often, different proteins will require different combinations of α and β in order to translocate. Some examples of different cargo are listed below.

CargoImport Receptor
SV40Importin-β and importin-α
NucleoplasminImportin-β and importin-α
STAT1Importin-β and NPI-1 (type of importin-α)
TFIIAImportin-α not required
U1AImportin-α not required

Human importin genes

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Although importin-α and importin-β are used to describe importin as a whole, they actually represent largerfamilies ofproteins that share a similar structure and function. Various different genes have been identified for both α and β, with some of them listed below. Note that oftenkaryopherin and importin are used interchangeably.

See also

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References

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  1. ^abcGörlich D, Prehn S, Laskey RA, Hartmann E (December 1994). "Isolation of a protein that is essential for the first step of nuclear protein import".Cell.79 (5):767–78.doi:10.1016/0092-8674(94)90067-1.PMID 8001116.S2CID 7539929.
  2. ^Mattaj IW, Englmeier L (1998)."Nucleocytoplasmic transport: the soluble phase".Annual Review of Biochemistry.67:265–306.doi:10.1146/annurev.biochem.67.1.265.PMID 9759490.
  3. ^Garcia-Bustos J, Heitman J, Hall MN (March 1991). "Nuclear protein localization".Biochim. Biophys. Acta.1071 (1):83–101.doi:10.1016/0304-4157(91)90013-m.PMID 2004116.
  4. ^Enenkel C, Blobel G, Rexach M (July 1995)."Identification of a yeast karyopherin heterodimer that targets import substrate to mammalian nuclear pore complexes".J. Biol. Chem.270 (28):16499–502.doi:10.1074/jbc.270.28.16499.PMID 7622450.
  5. ^Görlich D, Kostka S, Kraft R, Dingwall C, Laskey RA, Hartmann E, Prehn S (April 1995). "Two different subunits of importin cooperate to recognize nuclear localization signals and bind them to the nuclear envelope".Current Biology.5 (4):383–92.Bibcode:1995CBio....5..383G.doi:10.1016/s0960-9822(95)00079-0.hdl:11858/00-001M-0000-002D-1CBD-2.PMID 7627554.S2CID 6055941.
  6. ^Lott K, Cingolani G (September 2011)."The importin β binding domain as a master regulator of nucleocytoplasmic transport".Biochimica et Biophysica Acta (BBA) - Molecular Cell Research.1813 (9):1578–92.doi:10.1016/j.bbamcr.2010.10.012.PMC 3037977.PMID 21029753.
  7. ^abPufall MA, Graves BJ (2002). "Autoinhibitory domains: modular effectors of cellular regulation".Annual Review of Cell and Developmental Biology.18:421–62.doi:10.1146/annurev.cellbio.18.031502.133614.PMID 12142282.
  8. ^Conti E, Uy M, Leighton L, Blobel G, Kuriyan J (July 1998)."Crystallographic analysis of the recognition of a nuclear localization signal by the nuclear import factor karyopherin alpha".Cell.94 (2):193–204.doi:10.1016/s0092-8674(00)81419-1.PMID 9695948.S2CID 16230174.
  9. ^Lee SJ, Matsuura Y, Liu SM, Stewart M (June 2005). "Structural basis for nuclear import complex dissociation by RanGTP".Nature.435 (7042):693–6.Bibcode:2005Natur.435..693L.doi:10.1038/nature03578.PMID 15864302.S2CID 4304731.
  10. ^Bayliss R, Littlewood T, Stewart M (July 2000)."Structural basis for the interaction between FxFG nucleoporin repeats and importin-beta in nuclear trafficking".Cell.102 (1):99–108.doi:10.1016/s0092-8674(00)00014-3.PMID 10929717.S2CID 17495979.
  11. ^abcdWeis K (February 2003)."Regulating access to the genome: nucleocytoplasmic transport throughout the cell cycle".Cell.112 (4):441–51.doi:10.1016/s0092-8674(03)00082-5.PMID 12600309.S2CID 17664108.
  12. ^Terry LJ, Shows EB, Wente SR (November 2007). "Crossing the nuclear envelope: hierarchical regulation of nucleocytoplasmic transport".Science.318 (5855):1412–6.Bibcode:2007Sci...318.1412T.doi:10.1126/science.1142204.PMID 18048681.S2CID 163986.
  13. ^Kim IS, Kim DH, Han SM, Chin MU, Nam HJ, Cho HP, Choi SY, Song BJ, Kim ER, Bae YS, Moon YH (July 2000)."Truncated form of importin alpha identified in breast cancer cell inhibits nuclear import of p53".The Journal of Biological Chemistry.275 (30):23139–45.doi:10.1074/jbc.M909256199.PMID 10930427.
  14. ^Winnepenninckx V, Lazar V, Michiels S, Dessen P, Stas M, Alonso SR, Avril MF, Ortiz Romero PL, Robert T, Balacescu O, Eggermont AM, Lenoir G, Sarasin A, Tursz T, van den Oord JJ, Spatz A (April 2006)."Gene expression profiling of primary cutaneous melanoma and clinical outcome".Journal of the National Cancer Institute.98 (7):472–82.doi:10.1093/jnci/djj103.PMID 16595783.
  15. ^Sekimoto T, Imamoto N, Nakajima K, Hirano T, Yoneda Y (December 1997)."Extracellular signal-dependent nuclear import of Stat1 is mediated by nuclear pore-targeting complex formation with NPI-1, but not Rch1".The EMBO Journal.16 (23):7067–77.doi:10.1093/emboj/16.23.7067.PMC 1170309.PMID 9384585.

External links

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This article incorporates text from the public domainPfam andInterPro:IPR002652
This article incorporates text from the public domainPfam andInterPro:IPR001494
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