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IRX5

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
IRX5
Identifiers
AliasesIRX5, HMMS, IRX-2a, IRXB2, iroquois homeobox 5
External IDsOMIM:606195;MGI:1859086;GeneCards:IRX5;OMA:IRX5 - orthologs
Gene location (Human)
Chromosome 16 (human)
Chr.Chromosome 16 (human)[1]
Chromosome 16 (human)
Genomic location for IRX5
Genomic location for IRX5
Band16q12.2Start54,930,865bp[1]
End54,934,485bp[1]
Gene location (Mouse)
Chromosome 8 (mouse)
Chr.Chromosome 8 (mouse)[2]
Chromosome 8 (mouse)
Genomic location for IRX5
Genomic location for IRX5
Band8 C5|8 44.93 cMStart93,084,253bp[2]
End93,102,914bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • skin of thigh

  • bronchial epithelial cell

  • skin of abdomen

  • right ventricle

  • lactiferous duct

  • skin of hip

  • parotid gland

  • muscle of thigh

  • apex of heart

  • vulva
Top expressed in
  • endocardium of atrium

  • molar

  • maxillary prominence

  • endocardium of ventricle

  • vestibular membrane of cochlear duct

  • lacrimal gland

  • Meckel's cartilage

  • conjunctival fornix

  • masseter muscle

  • left lung lobe
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

10265

54352

Ensembl

ENSG00000176842

ENSMUSG00000031737

UniProt

P78411

Q9JKQ4

RefSeq (mRNA)

NM_001252197
NM_005853

NM_018826

RefSeq (protein)

NP_001239126
NP_005844

NP_061296

Location (UCSC)Chr 16: 54.93 – 54.93 MbChr 8: 93.08 – 93.1 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Iroquois-class homeodomain protein IRX-5, also known asIroquois homeobox protein 5, is aprotein that in humans is encoded by theIRX5gene.[5][6]

Function

[edit]

IRX5 is a member of theIroquois homeobox gene family. Members of this family appear to play multiple roles during pattern formation of vertebrate embryos.[5] First described in a 2012 study byReversade and colleagues, the loss of IRX5 in humans causes Hamamy Syndrome, a recessive developmental disorder mainly affecting the heart, long bones, and craniofacial structures.[7]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000176842Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000031737Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ab"Entrez Gene: iroquois homeobox 1".
  6. ^Ogura K, Matsumoto K, Kuroiwa A, Isobe T, Otoguro T, Jurecic V, et al. (2001). "Cloning and chromosome mapping of human and chicken Iroquois (IRX) genes".Cytogenetics and Cell Genetics.92 (3–4):320–5.doi:10.1159/000056921.PMID 11435706.S2CID 46509502.
  7. ^Bonnard C, Strobl AC, Shboul M, Lee H, Merriman B, Nelson SF, et al. (May 2012). "Mutations in IRX5 impair craniofacial development and germ cell migration via SDF1".Nature Genetics.44 (6):709–13.doi:10.1038/ng.2259.hdl:20.500.12684/3752.PMID 22581230.S2CID 5535474.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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