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IKZF2

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
IKZF2
Identifiers
AliasesIKZF2, ANF1A2, HELIOS, ZNF1A2, ZNFN1A2, IKAROS family zinc finger 2
External IDsOMIM:606234;MGI:1342541;HomoloGene:22659;GeneCards:IKZF2;OMA:IKZF2 - orthologs
Gene location (Human)
Chromosome 2 (human)
Chr.Chromosome 2 (human)[1]
Chromosome 2 (human)
Genomic location for IKZF2
Genomic location for IKZF2
Band2q34Start212,999,691bp[1]
End213,152,427bp[1]
Gene location (Mouse)
Chromosome 1 (mouse)
Chr.Chromosome 1 (mouse)[2]
Chromosome 1 (mouse)
Genomic location for IKZF2
Genomic location for IKZF2
Band1|1 C3Start69,570,373bp[2]
End69,726,404bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • thymus

  • palpebral conjunctiva

  • amniotic fluid

  • mucosa of pharynx

  • oral cavity

  • gingival epithelium

  • pancreatic epithelial cell

  • mucosa of paranasal sinus

  • epithelium of nasopharynx

  • skin of thigh
Top expressed in
  • conjunctival fornix

  • gastrula

  • submandibular gland

  • transitional epithelium of urinary bladder

  • cornea

  • lobe of prostate

  • otolith organ

  • utricle

  • skin of external ear

  • vestibular membrane of cochlear duct
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

22807

22779

Ensembl

ENSG00000030419

ENSMUSG00000025997

UniProt

Q9UKS7

P81183

RefSeq (mRNA)
NM_001079526
NM_016260
NM_001371274
NM_001371275
NM_001371276

NM_001371277
NM_001387220

NM_011770

RefSeq (protein)
NP_001072994
NP_057344
NP_001358203
NP_001358204
NP_001358205

NP_001358206

NP_035900
NP_001389779
NP_001389781
NP_001389782
NP_001389783

NP_001389784
NP_001389785
NP_001389786

Location (UCSC)Chr 2: 213 – 213.15 MbChr 1: 69.57 – 69.73 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Zinc finger protein Helios is aprotein that in humans is encoded by theIKZF2gene.[5][6][7] This protein is a member of Ikaros family of transcription factors.[8]

Thisgene encodes a member of the Ikaros family of zinc-finger proteins. This family of transcription factors consists of five members: Ikaros (Ikzf1), Helios (Ikzf2), Aiolos (Ikzf3), Eos (Ikzf4), and Pegasus (Ikzf5). The Ikaros family members are involved in the hematopoietic development, some to a greater extent than others withIkaros being expressed in all hematopoietic cells.[8] This protein forms homo- or hetero-dimers with other Ikaros family members. Multiple transcript variants encoding differentisoforms have been found for thisgene, but the biological relevance of some variants has not been determined.[7]

When these factors are missing or altered,lymphocytes suffer from defective development. Since Ikaros family members can interact with each other, it is probable that when onetranscription factor is defected, others can substitute it. Because of this, it is rather difficult to assess precise function to eachtranscription factor.[9]

Structure

[edit]

Ikaros family members are characterised by having 4N-terminalzinc finger domains, except for Pegasus, which has only 3. These are the key domains for DNA binding and stabilization of DNA-protein interactions. They also haveC-terminalzinc finger domains which serve as a site for interactions with other proteins and hetero- or homodimerization with other family members.[9]

Function

[edit]

As transcription factor

[edit]

Helios is said to repress theIL-2 expression inTregs. This function was also confirmed forEos, another member of Ikaros family oftranscription factors, pointing to their redundant functions. Helios interacts withFoxp3 to lowerIL2 expression. They form a complex and bind to theIL2 locus causing repressive epigenetic modifications, namely reducedhistone H3acetylation.[10] Loss of Helios causes decreased binding ofFoxp3 to theIL2 promoter and milderIL-2 repression.[9]

Helios is also said to be part of thepositive feedback loop ofIL-2. It positively affects theIL-2Rα-STAT5 pathway.[11][12]IL-2 maintains Helios expression.IL-2 is probably not the only factor positively affecting Helios expression.[11]

As a tumor suppressor

[edit]

Helios is said to also function as atumor suppressor. Such role of Helios was observed when a dominant negative isoform of this protein, that lacked three out of fourN-terminalzinc fingers, was found in adultT cellmalignancies. Indeed, forced expression of thisisoform of Helios did lead to the development ofT cell lymphoma in a murine model. However, the ectopic expression ofwildtype Helios inB cells results inlymphomas as well. This suggests that Helios might act as atumor suppressor only in the cells that it is naturally expressed in, when expressed in other cells, it is rather tumorigenic.[8]

Since Helios-deficientTregs have the ability to produceIFN-γ andTNF-α, they seem to be useful in anti-tumor responses. SuchTreg cells can infiltrate thetumor without keeping their suppressive function, subsequently producingIFN-γ andTNF-α, which could help with slowing thetumor growth. Moreover, the loss of suppressive phenotype ofTreg cells was observed intumors, but not in splenicTregs, which can potentially have great clinical significance. Based on these findings, Helios could be considered a powerful tool in the anti-tumor therapy. However, it is too early for such conclusion and even though the data seem promising, more research needs to be done in this area.[11]

In immune cells

[edit]

Helios is expressed in many matureT lymphocyte populations, however, it is best known for its expression inT regulatory cell (Treg) population.[9]

Tregs

[edit]

Treg cells are a population ofT cells that can suppress the effector function of otherimmune cells.[13] We can divideTreg cells into two main subsets: thymus-derived Treg cell (tTreg) and peripherally-induced Treg cell (pTreg). TTregs are the subset of cells that develops inthymus fromT lymphocytes that recognise self-antigens. Whereas pTregs arelymphocytes that are induced in the periphery originally fromCD4+Foxp3- cells and which subsequently acquire suppressive function. BothTreg cells subsets areFoxp3+.[8]

Helios is expressed only in 70-80 % ofTreg cells in mice and humans. The fact that Helios is not expressed in allTregs was in the past explained by the observations that Helios could actually be found only in tTregs (Tregs that arise from the thymus), not pTregs. This believe was supported by experimental data, that discovered the expression of Helios only in earlyFoxp3+thymocytes or that did not find the expression of Helios inTregs in the periphery in the first few days. Moreover, experiments generating induced Tregs (iTregs)in vitro, did not find any expression of Helios in the cells. Thus, Helios used to be considered a tTreg marker.[8]

Recently, the idea of Helios as a tTregs specific marker, has become controversial. Current studies indicate that even iTregs can express Heliostranscription factor. Thus, it is unclear whether Helios can be used as a marker for tTregs.[8][13]

Current data suggest that Helios is a marker ofTreg stability rather than a specific marker for differentiation between tTregs and pTregs.[11]

It was discovered that Helios is not essential for early development ofT cells inthymus, but it is important forTreg suppressive function later in their life. This conclusion was drawn when the loss of Helios inT cells did not have any effect onT cell development andhomeostasis of theimmune system in a mouse model. However, it did result in a defective immune regulation later in the life with the onset ofautoimmunity resulting from defectiveTreg function.[11]

Tregs that lack Helios have lower expression ofFoxp3 and lower activation ofSTAT5. Helios-deficientTregs also seem to produce effectorcytokines that are not usually produced by this cell type –interleukin 17 (IL-17),interferon gamma (IFN-γ) andtumor necrosis factor alpha (TNF-α).[10] Thus, this suggests that Helios is important for the identity ofTreg cell and stability of theircytokine profile. It is important to mention, that so far we do not have enough knowledge about the mechanism of Helios keepingTreg stability and even about Helios's own expression inTregs. Thus, there is a need to uncover the mechanism behind these findings.[11]

In other immune cells

[edit]

BesideCD4+Tregs, Helios is also expressed in murineNK cells. In this immune cell subset, Helios is expressed early during their development, and it is later downregulated.[8]

Helios is also expressed inCD8+regulatory T cells. Helios maintains their suppressive function similarly to theCD4+Tregs.[12]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000030419Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000025997Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Hahm K, Cobb BS, McCarty AS, Brown KE, Klug CA, Lee R, et al. (March 1998)."Helios, a T cell-restricted Ikaros family member that quantitatively associates with Ikaros at centromeric heterochromatin".Genes & Development.12 (6):782–796.doi:10.1101/gad.12.6.782.PMC 316626.PMID 9512513.
  6. ^Kelley CM, Ikeda T, Koipally J, Avitahl N, Wu L, Georgopoulos K, Morgan BA (April 1998)."Helios, a novel dimerization partner of Ikaros expressed in the earliest hematopoietic progenitors".Current Biology.8 (9):508–515.Bibcode:1998CBio....8..508K.doi:10.1016/S0960-9822(98)70202-7.PMID 9560339.
  7. ^ab"Entrez Gene: IKZF2 IKAROS family zinc finger 2 (Helios)".
  8. ^abcdefgThornton AM, Shevach EM (November 2019)."Helios: still behind the clouds".Immunology.158 (3):161–170.doi:10.1111/imm.13115.PMC 6797934.PMID 31517385.
  9. ^abcdRead KA, Jones DM, Freud AG, Oestreich KJ (March 2021)."Established and emergent roles for Ikaros transcription factors in lymphoid cell development and function".Immunological Reviews.300 (1):82–99.doi:10.1111/imr.12936.PMC 8015388.PMID 33331000.
  10. ^abPowell MD, Read KA, Sreekumar BK, Oestreich KJ (2019-06-06)."Ikaros Zinc Finger Transcription Factors: Regulators of Cytokine Signaling Pathways and CD4+ T Helper Cell Differentiation".Frontiers in Immunology.10 1299.doi:10.3389/fimmu.2019.01299.PMC 6563078.PMID 31244845.
  11. ^abcdefChougnet C, Hildeman D (August 2016)."Helios-controller of Treg stability and function".Translational Cancer Research.5 (Suppl 2):S338–S341.doi:10.21037/tcr.2016.07.37.PMC 6333417.PMID 30656143.
  12. ^abNakagawa H, Wang L, Cantor H, Kim HJ (2018-01-01). Alt F (ed.).New Insights into the Biology of CD8 Regulatory T Cells. Advances in Immunology. Vol. 140. Academic Press. pp. 1–20.doi:10.1016/bs.ai.2018.09.001.ISBN 978-0-12-815186-0.PMID 30366517.
  13. ^abMohr A, Malhotra R, Mayer G, Gorochov G, Miyara M (2018)."Human FOXP3+ T regulatory cell heterogeneity".Clinical & Translational Immunology.7 (1) e1005.doi:10.1002/cti2.1005.PMC 5822410.PMID 29484183.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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