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IKZF1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

"Ikaros transcription factor" redirects here. For other uses, seeIcarus (disambiguation).
IKZF1
Identifiers
AliasesIKZF1, Hs.54452, IK1, IKAROS, LYF1, LyF-1, PPP1R92, PRO0758, ZNFN1A1, CVID13, IKAROS family zinc finger 1
External IDsOMIM:603023;MGI:1342540;HomoloGene:55948;GeneCards:IKZF1;OMA:IKZF1 - orthologs
Gene location (Human)
Chromosome 7 (human)
Chr.Chromosome 7 (human)[1]
Chromosome 7 (human)
Genomic location for IKZF1
Genomic location for IKZF1
Band7p12.2Start50,304,068bp[1]
End50,405,101bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for IKZF1
Genomic location for IKZF1
Band11 A1|11 7.02 cMStart11,635,003bp[2]
End11,722,926bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • white blood cell

  • monocyte

  • bone marrow

  • trabecular bone

  • blood

  • granulocyte

  • bone marrow cell

  • lymph node

  • epithelium of nasopharynx

  • thymus
Top expressed in
  • thymus

  • granulocyte

  • blood

  • mesenteric lymph nodes

  • spleen

  • submandibular gland

  • stroma of bone marrow

  • subcutaneous adipose tissue

  • embryo

  • yolk sac
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

10320

22778

Ensembl

ENSG00000185811

ENSMUSG00000018654

UniProt

Q13422

Q03267

RefSeq (mRNA)
NM_001220765
NM_001220766
NM_001220767
NM_001220768
NM_001220769

NM_001220770
NM_001220771
NM_001220772
NM_001220773
NM_001220774
NM_001220775
NM_001220776
NM_001291837
NM_001291838
NM_001291839
NM_001291840
NM_001291841
NM_001291842
NM_001291843
NM_001291844
NM_001291845
NM_001291846
NM_001291847
NM_006060

NM_001025597
NM_001301863
NM_001301865
NM_001301866
NM_001301868

NM_009578

RefSeq (protein)
NP_001207694
NP_001207696
NP_001207697
NP_001207699
NP_001207700

NP_001278766
NP_001278767
NP_001278768
NP_001278769
NP_001278770
NP_001278771
NP_001278772
NP_001278773
NP_001278774
NP_001278775
NP_001278776
NP_006051

n/a

Location (UCSC)Chr 7: 50.3 – 50.41 MbChr 11: 11.64 – 11.72 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

DNA-binding protein Ikaros also known asIkaros family zinc finger protein 1 is aprotein that in humans is encoded by theIKZF1gene.[5][6][7]

Ikaros - transcription factor

[edit]

Ikaros is a transcription factor that is encoded by theIKZF genes of the Ikaros familyzinc finger group. Zinc finger is a small structural motif of protein that allows protein binding to DNA or RNA molecule that is characterized by the coordination of one or more zinc ions (Zn2+) in order to stabilize the fold.

Ikaros displays crucial functions in thehematopoietic system and is a known regulator ofimmune cells development, mainly in earlyB cells,CD4+ T cells. Its dysfunction has been linked to the development of chronic lymphocytic leukemia.[8][9] In particular, Ikaros has been found in recent years to be a major tumor suppressor involved in human B-cell acute lymphoblastic leukemia[8] and that it also has a part in the differentiation and function of individualT helper cells.[10]

Ikaros also has a role during the later stages of B cell development duringVDJ recombination in switch class of theantibody isotypes and expression of theB cell receptor.[11]

In Ikaros knockout mice, T cells but not B cells are generated late in mouse development due to late compensatory expression of the related gene Aiolos (IKZF3).[12] Ikaros point mutant mice are embryonic lethal due to anemia; they have severe defects in terminalerythrocyte andgranulocyte differentiation, and excessivemacrophage formation.[13] SNPs located near the3' region of IKZF1 in humans have been linked to susceptibility to childhoodacute lymphoblastic leukemia (ALL)[14] as well astype 1 diabetes.[15] The two effects appear to be in opposite directions, with the allele marking susceptibility toALL protecting fromT1D and vice versa.[15]

Further evidence shows that Ikaros regulates the development ofmedullary thymic epithelial cells (mTECs). Conditional deletion ofIkzf1 in thymic epithelial cells byFoxn1-Cre in mice, results in the dysregulation of various mTEC subsets, including the loss of Aire+ mTECs. The loss ofAire (Autoimmune regulator) expressing mTECs also causes global loss oftissue restricted antigens (TRAs) and Aire-dependentmimetic cell populations, with the loss of TRAs eventually leading to breakdown ofimmune tolerance.[16]

Genes of the Ikaros Zinc Finger Family group

[edit]

The Ikaros Zinc Finger (IkZF) family oftranscription factors are known regulators of hematopoietic cell development and many immune cells including that of CD4+ T cells.

The IkZF family consists of five members: Ikaros (encoded by the geneIkzf1), Helios (Ikzf2), Aiolos (Ikzf3), Eos (Ikzf4), and Pegasus (Ikzf5). These factors contain N-terminal zinc finger (ZF) domains, which are responsible for mediating direct interactions with DNA, and C-terminal ZFs, which facilitate homo- and heterodimerization between IkZF family members.[17]

IKZF1 is upregulated in granulocytes, B cells, CD4 and CD8 T cells, and NK cells, and downregulated in erythroblasts, megakaryocytes and monocytes.[18]

Ikaros deficiency

[edit]

The mutation in theIKZF1 gene can cause dysfunction of the Ikaros transcription factor. The dysfunction affects expression inB cells that can lead to deregulation of the BCR signaling during B cell development and is associated with B cell transformation. The deregulation then can result in lowproliferation rate and increasedapoptosis of the B cells. The deregulation may be related withlymphoproliferative disorders and different forms ofleukemia.[19]

Interactions

[edit]

IKZF1 has been shown tointeract with:

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000185811Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000018654Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Georgopoulos K, Moore DD, Derfler B (October 1992). "Ikaros, an early lymphoid-specific transcription factor and a putative mediator for T cell commitment".Science.258 (5083):808–12.Bibcode:1992Sci...258..808G.doi:10.1126/science.1439790.PMID 1439790.
  6. ^Hahm K, Ernst P, Lo K, Kim GS, Turck C, Smale ST (November 1994)."The lymphoid transcription factor LyF-1 is encoded by specific, alternatively spliced mRNAs derived from the Ikaros gene".Molecular and Cellular Biology.14 (11):7111–23.doi:10.1128/mcb.14.11.7111.PMC 359245.PMID 7935426.
  7. ^"Entrez Gene: IKZF1 IKAROS family zinc finger 1 (Ikaros)".
  8. ^abKastner P, Chan S (June 2011)."Role of Ikaros in T-cell acute lymphoblastic leukemia".World Journal of Biological Chemistry.2 (6):108–114.doi:10.4331/wjbc.v2.i6.108.PMC 3135856.PMID 21765975.
  9. ^Oliveira VC, Lacerda MP, Moraes BB, Gomes CP, Maricato JT, Souza OF, et al. (September 2019). "Deregulation of Ikaros expression in B-1 cells: New insights in the malignant transformation to chronic lymphocytic leukemia".Journal of Leukocyte Biology.106 (3):581–594.doi:10.1002/JLB.MA1118-454R.PMID 31299112.S2CID 196350761.
  10. ^Powell MD, Read KA, Sreekumar BK, Oestreich KJ (2019)."Ikaros Zinc Finger Transcription Factors: Regulators of Cytokine Signaling Pathways and CD4+ T Helper Cell Differentiation".Frontiers in Immunology.10 1299.doi:10.3389/fimmu.2019.01299.PMC 6563078.PMID 31244845.
  11. ^Sellars M, Kastner P, Chan S (June 2011)."Ikaros in B cell development and function".World Journal of Biological Chemistry.2 (6):132–9.doi:10.4331/wjbc.v2.i6.132.PMC 3135860.PMID 21765979.
  12. ^Georgopoulos K, Winandy S, Avitahl N (1997). "The role of the Ikaros gene in lymphocyte development and homeostasis".Annual Review of Immunology.15:155–76.doi:10.1146/annurev.immunol.15.1.155.PMID 9143685.
  13. ^Papathanasiou P, Perkins AC, Cobb BS, Ferrini R, Sridharan R, Hoyne GF, et al. (July 2003)."Widespread failure of hematolymphoid differentiation caused by a recessive niche-filling allele of the Ikaros transcription factor".Immunity.19 (1):131–44.doi:10.1016/s1074-7613(03)00168-7.PMID 12871645.
  14. ^Papaemmanuil E, Hosking FJ, Vijayakrishnan J, Price A, Olver B, Sheridan E, et al. (September 2009)."Loci on 7p12.2, 10q21.2 and 14q11.2 are associated with risk of childhood acute lymphoblastic leukemia".Nature Genetics.41 (9):1006–10.doi:10.1038/ng.430.PMC 4915548.PMID 19684604.
  15. ^abSwafford AD, Howson JM, Davison LJ, Wallace C, Smyth DJ, Schuilenburg H, et al. (March 2011)."An allele of IKZF1 (Ikaros) conferring susceptibility to childhood acute lymphoblastic leukemia protects against type 1 diabetes".Diabetes.60 (3):1041–4.doi:10.2337/db10-0446.PMC 3046822.PMID 21270240.
  16. ^Sin JH, Sucharov J, Kashyap S, Wang Y, Proekt I, Liu X, et al. (October 2023)."Ikaros is a principal regulator of Aire+ mTEC homeostasis, thymic mimetic cell diversity, and central tolerance".Science Immunology.8 (88) eabq3109.doi:10.1126/sciimmunol.abq3109.PMC 11433069.PMID 37889983.S2CID 264518068.
  17. ^Powell MD, Read KA, Sreekumar BK, Oestreich KJ (2019-06-06)."+ T Helper Cell Differentiation".Frontiers in Immunology.10: 1299.doi:10.3389/fimmu.2019.01299.PMC 6563078.PMID 31244845.
  18. ^Watkins NA, Gusnanto A, de Bono B, De S, Miranda-Saavedra D, Hardie DL, et al. (May 2009)."A HaemAtlas: characterizing gene expression in differentiated human blood cells".Blood.113 (19):e1 –e9.doi:10.1182/blood-2008-06-162958.PMC 2680378.PMID 19228925.
  19. ^Oliveira VC, Lacerda MP, Moraes BB, Gomes CP, Maricato JT, Souza OF, et al. (July 2019). "Deregulation of Ikaros expression in B-1 cells: New insights in the malignant transformation to chronic lymphocytic leukemia".Journal of Leukocyte Biology.106 (3):581–594.doi:10.1002/JLB.MA1118-454R.PMID 31299112.S2CID 196350761.
  20. ^Koipally J, Georgopoulos K (June 2000)."Ikaros interactions with CtBP reveal a repression mechanism that is independent of histone deacetylase activity".The Journal of Biological Chemistry.275 (26):19594–602.doi:10.1074/jbc.M000254200.PMID 10766745.
  21. ^abcdKoipally J, Renold A, Kim J, Georgopoulos K (June 1999)."Repression by Ikaros and Aiolos is mediated through histone deacetylase complexes".The EMBO Journal.18 (11):3090–100.doi:10.1093/emboj/18.11.3090.PMC 1171390.PMID 10357820.
  22. ^abcdeKoipally J, Georgopoulos K (August 2002)."A molecular dissection of the repression circuitry of Ikaros".The Journal of Biological Chemistry.277 (31):27697–705.doi:10.1074/jbc.M201694200.PMID 12015313.
  23. ^Kelley CM, Ikeda T, Koipally J, Avitahl N, Wu L, Georgopoulos K, et al. (April 1998)."Helios, a novel dimerization partner of Ikaros expressed in the earliest hematopoietic progenitors".Current Biology.8 (9):508–15.Bibcode:1998CBio....8..508K.doi:10.1016/s0960-9822(98)70202-7.PMID 9560339.S2CID 17835058.
  24. ^Morgan B, Sun L, Avitahl N, Andrikopoulos K, Ikeda T, Gonzales E, et al. (April 1997)."Aiolos, a lymphoid restricted transcription factor that interacts with Ikaros to regulate lymphocyte differentiation".The EMBO Journal.16 (8):2004–13.doi:10.1093/emboj/16.8.2004.PMC 1169803.PMID 9155026.
  25. ^Kim J, Sif S, Jones B, Jackson A, Koipally J, Heller E, et al. (March 1999)."Ikaros DNA-binding proteins direct formation of chromatin remodeling complexes in lymphocytes".Immunity.10 (3):345–55.doi:10.1016/s1074-7613(00)80034-5.PMID 10204490.
  26. ^Honma Y, Kiyosawa H, Mori T, Oguri A, Nikaido T, Kanazawa K, et al. (March 1999)."Eos: a novel member of the Ikaros gene family expressed predominantly in the developing nervous system".FEBS Letters.447 (1):76–80.Bibcode:1999FEBSL.447...76H.doi:10.1016/s0014-5793(99)00265-3.PMID 10218586.S2CID 28898354.
  27. ^Perdomo J, Holmes M, Chong B, Crossley M (December 2000)."Eos and pegasus, two members of the Ikaros family of proteins with distinct DNA binding activities".The Journal of Biological Chemistry.275 (49):38347–54.doi:10.1074/jbc.M005457200.PMID 10978333.
  28. ^Koipally J, Georgopoulos K (June 2002)."Ikaros-CtIP interactions do not require C-terminal binding protein and participate in a deacetylase-independent mode of repression".The Journal of Biological Chemistry.277 (26):23143–9.doi:10.1074/jbc.M202079200.PMID 11959865.
  29. ^Katsumura KR, Bresnick EH (April 2017)."The GATA factor revolution in hematology".Blood.129 (15):2092–2102.doi:10.1182/blood-2016-09-687871.PMC 5391619.PMID 28179282.

Further reading

[edit]

External links

[edit]
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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