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IFI16

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

IFI16
Available structures
PDBHuman UniProt search:PDBeRCSB
List of PDB id codes

2OQ0,3B6Y,3RLN,3RLO,3RNU,4QGU

Identifiers
AliasesIFI16, IFNGIP1, PYHIN2, interferon gamma inducible protein 16
External IDsOMIM:147586;MGI:3695276;HomoloGene:115929;GeneCards:IFI16;OMA:IFI16 - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for IFI16
Genomic location for IFI16
Band1q23.1Start158,999,968bp[1]
End159,055,155bp[1]
Gene location (Mouse)
Chromosome 1 (mouse)
Chr.Chromosome 1 (mouse)[2]
Chromosome 1 (mouse)
Genomic location for IFI16
Genomic location for IFI16
Band1|1 H3Start173,393,849bp[2]
End173,426,840bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • germinal epithelium

  • pericardium

  • palpebral conjunctiva

  • Achilles tendon

  • lymph node

  • superficial temporal artery

  • vena cava

  • mucosa of nose

  • spleen

  • human penis
Top expressed in
  • mesenteric lymph nodes

  • subcutaneous adipose tissue

  • spleen

  • thymus

  • bone marrow

  • white adipose tissue

  • blood

  • granulocyte

  • lumbar spinal ganglion

  • stroma of bone marrow
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

3428

623121

Ensembl

ENSG00000163565

ENSMUSG00000073491

UniProt

Q16666

n/a

RefSeq (mRNA)
NM_001206567
NM_005531
NM_001364867
NM_001376587
NM_001376588

NM_001376589
NM_001376591
NM_001376592

NM_001033384
NM_001177349
NM_001177350
NM_001368798
NM_001368799

RefSeq (protein)
NP_001193496
NP_005522
NP_001351796
NP_001363516
NP_001363517

NP_001363518
NP_001363520
NP_001363521

n/a

Location (UCSC)Chr 1: 159 – 159.06 MbChr 1: 173.39 – 173.43 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Gamma-interferon-inducible protein Ifi-16 (Ifi-16) also known asinterferon-inducible myeloid differentiation transcriptional activator is aprotein that in humans is encoded by theIFI16gene.[5][6][7]

Function

[edit]

This gene encodes a member of the HIN-200 (hematopoietic interferon-inducible nuclear antigens with 200 amino acid repeats) family ofcytokines. The encoded protein contains domains involved in DNA binding, transcriptional regulation, and protein-protein interactions. The protein localizes to thenucleoplasm andnucleoli, and interacts withp53.[8] It modulates p53 function, and inhibits cell growth in theRas/Raf signaling pathway.[7] IFI16 has been shown to play a role in the sensing of intracellularDNA[9] - a hallmark of virally infected cells - and has also been linked to the death ofHIV-infectedhelper CD4 T cells bypyroptosis, a highly inflammatory form of programmed cell death.[10][11] Recently, it has been shown how IFI16, once extracellularly released, can induce inflammation uponTLR4 binding, acting as aDAMP.[12]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000163565Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000073491Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Trapani JA, Browne KA, Dawson MJ, Ramsay RG, Eddy RL, Show TB, et al. (Oct 1992). "A novel gene constitutively expressed in human lymphoid cells is inducible with interferon-gamma in myeloid cells".Immunogenetics.36 (6):369–376.doi:10.1007/bf00218044.PMID 1526658.S2CID 1196925.
  6. ^Trapani JA, Dawson M, Apostolidis VA, Browne KA (Dec 1994). "Genomic organization of IFI16, an interferon-inducible gene whose expression is associated with human myeloid cell differentiation: correlation of predicted protein domains with exon organization".Immunogenetics.40 (6):415–424.doi:10.1007/bf00177824.PMID 7959953.S2CID 2602156.
  7. ^ab"Entrez Gene: IFI16 interferon, gamma-inducible protein 16".
  8. ^Ouchi M, Ouchi T (January 2008)."Role of IFI16 in DNA damage and checkpoint".Frontiers in Bioscience.13 (13):236–239.doi:10.2741/2673.PMID 17981541.
  9. ^Unterholzner L, Keating SE, Baran M, Horan KA, Jensen SB, Sharma S, et al. (November 2010)."IFI16 is an innate immune sensor for intracellular DNA".Nature Immunology.11 (11):997–1004.doi:10.1038/ni.1932.PMC 3142795.PMID 20890285.
  10. ^Monroe KM, Yang Z, Johnson JR, Geng X, Doitsh G, Krogan NJ, et al. (January 2014)."IFI16 DNA sensor is required for death of lymphoid CD4 T cells abortively infected with HIV".Science.343 (6169):428–432.Bibcode:2014Sci...343..428M.doi:10.1126/science.1243640.PMC 3976200.PMID 24356113.
  11. ^Doitsh G, Galloway NL, Geng X, Yang Z, Monroe KM, Zepeda O, et al. (January 2014)."Cell death by pyroptosis drives CD4 T-cell depletion in HIV-1 infection".Nature.505 (7484):509–514.Bibcode:2014Natur.505..509D.doi:10.1038/nature12940.PMC 4047036.PMID 24356306.
  12. ^Iannucci A, Caneparo V, Raviola S, Debernardi I, Colangelo D, et al. (2020) Toll-like receptor 4-mediated inflammation triggered by extracellular IFI16 is enhanced by lipopolysaccharide binding. PLOS Pathogens 16(9): e1008811.https://doi.org/10.1371/journal.ppat.1008811

Further reading

[edit]

External links

[edit]
PDB gallery
  • 2oq0: Crystal Structure of the First HIN-200 Domain of Interferon-Inducible Protein 16
    2oq0: Crystal Structure of the First HIN-200 Domain of Interferon-Inducible Protein 16
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

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