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IκB kinase

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Class of enzymes
IkappaB kinase
Identifiers
EC no.2.7.11.10
CAS no.159606-08-3
Databases
IntEnzIntEnz view
BRENDABRENDA entry
ExPASyNiceZyme view
KEGGKEGG entry
MetaCycmetabolic pathway
PRIAMprofile
PDB structuresRCSB PDBPDBePDBsum
Gene OntologyAmiGO /QuickGO
Search
PMCarticles
PubMedarticles
NCBIproteins

TheIκB kinase (IkappaB kinase orIKK) is anenzyme complex that is involved in propagating the cellular response toinflammation,[1] specifically the regulation of lymphocytes.

The IκB kinase enzyme complex is part of the upstreamNF-κBsignal transduction cascade. TheIκBα (inhibitor of nuclear factor kappa B) protein inactivates the NF-κBtranscription factor by masking thenuclear localization signals (NLS) of NF-κB proteins and keeping them sequestered in an inactive state in the cytoplasm.[2][3][4] Specifically, IKKphosphorylates the inhibitory IκBα protein.[5] This phosphorylation results in the dissociation of IκBα from NF-κB. NF-κB, which is now free, migrates into the nucleus and activates the expression of at least 150 genes; some of which are anti-apoptotic.

Catalyzed reaction

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Inenzymology, an IκB kinase (EC2.7.11.10) is anenzyme thatcatalyzes thechemical reaction:

ATP + IκB protein{\displaystyle \rightleftharpoons } ADP + IκB phosphoprotein

Thus, the twosubstrates of this enzyme areATP andIκB protein, whereas its twoproducts areADP and IκB phosphoprotein.

This enzyme belongs to the family oftransferases, specifically those transferring a phosphate group to the sidechainoxygen atom ofserine orthreonine residues inproteins (protein-serine/threonine kinases). Thesystematic name of this enzyme class is ATP:[IκB protein] phosphotransferase.

Structure

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The IκB kinase complex is composed of three subunits each encoded by a separate gene:

The α- and β-subunits together are catalytically active whereas the γ-subunit serves a regulatory function.

The IKK-α and IKK-βkinase subunits are homologous in structure, composed of a kinase domain, as well asleucine zipper andhelix-loop-helix dimerization domains, and a carboxy-terminal NEMO-binding domain (NBD).[6] Mutational studies have revealed the identity of the NBD amino acid sequence as leucine-aspartate-tryptophan-serine-tryptophan-leucine, encoded by residues 737-742 and 738-743 of IKK-α and IKK-β, respectively.[7] The regulatory IKK-γ subunit, or NEMO, is composed of twocoiled coil domains, a leucine zipper dimerization domain, and azinc finger-binding domain.[6] Specifically, the NH2-terminus of NEMO binds to the NBD sequences on IKK-α and IKK-β, leaving the rest of NEMO accessible for interacting with regulatory proteins.[7]

conserved helix-loop-helix ubiquitous kinase
Identifiers
SymbolCHUK
Alt. symbolsIKK-alpha, IKK1, TCF16
NCBI gene1147
HGNC1974
OMIM600664
RefSeqNM_001278
UniProtO15111
Other data
EC number2.7.11.10
LocusChr. 10q24-q25
Search for
StructuresSwiss-model
DomainsInterPro
inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta
Identifiers
SymbolIKBKB
Alt. symbolsIKK-beta, IKK2
NCBI gene3551
HGNC5960
OMIM603258
RefSeqNM_001556
UniProtO14920
Other data
EC number2.7.11.10
LocusChr. 8p11.2
Search for
StructuresSwiss-model
DomainsInterPro
inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma
Identifiers
SymbolIKBKG
Alt. symbolsIKK-gamma, NEMO, IP2, IP1
NCBI gene8517
HGNC5961
OMIM300248
RefSeqNM_003639
UniProtQ9Y6K9
Other data
LocusChr. Xq28
Search for
StructuresSwiss-model
DomainsInterPro

Function

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IκB kinase activity is essential for activation of members of the nuclear factor-kB (NF-κB) family of transcription factors, which play a fundamental role in lymphocyte immunoregulation.[6][8] Activation of the canonical, or classical, NF-κB pathway begins in response to stimulation by various pro-inflammatory stimuli, includinglipopolysaccharide (LPS) expressed on the surface of pathogens, or the release of pro-inflammatorycytokines such astumor necrosis factor (TNF) orinterleukin-1 (IL-1). Following immune cell stimulation, a signal transduction cascade leads to the activation of the IKK complex, an event characterized by the binding of NEMO to the homologous kinase subunits IKK-α and IKK-β. The IKK complex phosphorylatesserine residues (S32 and S36) within the amino-terminal domain of inhibitor of NF-κB (IκBα) upon activation, consequently leading to itsubiquitination and subsequent degradation by theproteasome.[5] Degradation of IκBα releases the prototypical p50-p65 dimer for translocation to the nucleus, where it binds to κB sites and directs NF-κB-dependent transcriptional activity.[8] NF-κB target genes can be differentiated by their different functional roles within lymphocyte immunoregulation and include positive cell-cycle regulators, anti-apoptotic and survival factors, and pro-inflammatory genes. Collectively, activation of these immunoregulatory factors promotes lymphocyte proliferation, differentiation, growth, and survival.[9]

Regulation

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Activation of the IKK complex is dependent on phosphorylation of serine residues within the kinase domain of IKK-β, though IKK-α phosphorylation occurs concurrently in endogenous systems. Recruitment of IKK kinases by the regulatory domains of NEMO leads to the phosphorylation of two serine residues within theactivation loop of IKK-β, moving the activation loop away from the catalytic pocket, thus allowing access to ATP and IκBα peptide substrates. Furthermore, the IKK complex is capable of undergoing trans-autophosphorylation, where the activated IKK-β kinase subunit phosphorylates its adjacent IKK-α subunit, as well as other inactive IKK complexes, thus resulting in high levels of IκB kinase activity. Following IKK-mediated phosphorylation of IκBα and the subsequent decrease in IκB abundance, the activated IKK kinase subunits undergo extensive carboxy-terminalautophosphorylation, reaching a low activity state that is further susceptible to complete inactivation byphosphatases once upstream inflammatory signaling diminishes.[5]

Deregulation and disease

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Though functionally adaptive in response to inflammatory stimuli, deregulation of NF-κB signaling has been exploited in various disease states.[5][6][7][8][9][10] Increased NF-κB activity as a result of constitutive IKK-mediated phosphorylation of IκBα has been observed in the development ofatherosclerosis,asthma,rheumatoid arthritis,inflammatory bowel diseases, andmultiple sclerosis.[8][10] Specifically, constitutive NF-κB activity promotes continuous inflammatory signaling at the molecular level that translates to chronic inflammation phenotypically. Furthermore, the ability of NF-κB to simultaneously suppress apoptosis and promote continuous lymphocyte growth and proliferation explains its intimate connection with many types of cancer.[8][9]

Clinical significance

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This enzyme participates in 15 pathways related tometabolism:MapK signaling,apoptosis,Toll-like receptor signaling,T-cell receptor signaling,B-cell receptor signaling,insulin signaling,adipokine signaling,Type 2 diabetes mellitus, epithelial cell signaling inhelicobacter pylori,pancreatic cancer,prostate cancer,chronic myeloid leukemia,acute myeloid leukemia, andsmall cell lung cancer.

Inhibition of IκB kinase (IKK) and IKK-related kinases,IKBKE (IKKε) andTANK-binding kinase 1 (TBK1), has been investigated as a therapeutic option for the treatment of inflammatory diseases and cancer.[11] The small-molecule inhibitor of IKK-β SAR113945, developed by Sanofi-Aventis, was evaluated in patients with knee osteoarthritis.[11][12]

References

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  1. ^Häcker H, Karin M (October 2006). "Regulation and function of IKK and IKK-related kinases".Sci. STKE.2006 (357): re13.doi:10.1126/stke.3572006re13.PMID 17047224.S2CID 19617181.
  2. ^Jacobs MD, Harrison SC (1998)."Structure of an IkappaBalpha/NF-kappaB complex".Cell.95 (6):749–58.doi:10.1016/S0092-8674(00)81698-0.PMID 9865693.S2CID 7003353.
  3. ^Régnier CH, Song HY, Gao X, Goeddel DV, Cao Z, Rothe M (1997)."Identification and characterization of an IkappaB kinase".Cell.90 (2):373–83.doi:10.1016/S0092-8674(00)80344-X.PMID 9244310.S2CID 16217708.
  4. ^Mercurio F, Zhu H, Murray BW, Shevchenko A, Bennett BL, Li J, Young DB, Barbosa M, Mann M, Manning A, Rao A (1997). "IKK-1 and IKK-2: cytokine-activated IkappaB kinases essential for NF-kappaB activation".Science.278 (5339):860–6.Bibcode:1997Sci...278..860M.doi:10.1126/science.278.5339.860.PMID 9346484.
  5. ^abcdKarin M (1999). "How NF-kappaB is activated: the role of the IkappaB kinase (IKK) complex".Oncogene.18 (49):6867–74.doi:10.1038/sj.onc.1203219.PMID 10602462.S2CID 27754040.
  6. ^abcdGhosh S, Hayden M (November 2008). "New regulators of NF-κB in inflammation".Nat. Rev. Immunol.8 (11):837–48.doi:10.1038/nri2423.PMID 18927578.S2CID 31421212.
  7. ^abcMay MJ, D'acquisto F, Madge LA, Glöckner J, Pober JS, Ghosh S (September 2000). "Selective inhibition of NF-κB activation by a peptide that blocks the interaction of NEMO with the IκB kinase complex".Science.289 (5484):1550–54.Bibcode:2000Sci...289.1550M.doi:10.1126/science.289.5484.1550.PMID 10968790.
  8. ^abcdeStrickland I, Ghosh S (November 2006)."Use of cell permeable NBD peptides for suppression of inflammation".Ann Rheum Dis.65 (Suppl 3):iii75 –iii82.doi:10.1136/ard.2006.058438.PMC 1798375.PMID 17038479.
  9. ^abcJost PJ, Ruland J (April 2007)."Aberrant NF-κB signaling in lymphoma: mechanisms, consequences, and therapeutic implications".Blood.109 (7):2700–7.doi:10.1182/blood-2006-07-025809.PMID 17119127.
  10. ^abTak PP, Firestein GS (January 2001)."NF-κB: a key role in inflammatory diseases".J. Clin. Invest.107 (1):7–11.doi:10.1172/JCI11830.PMC 198552.PMID 11134171.
  11. ^abLlona-Minguez S, Baiget J, Mackay SP (2013). "Small-molecule inhibitors of IκB kinase (IKK) and IKK-related kinases".Pharm. Pat. Anal.2 (4):481–498.doi:10.4155/ppa.13.31.PMID 24237125.
  12. ^"SAR113945 published clinical trials".

Further reading

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External links

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Non-specific serine/threonine protein kinases (EC 2.7.11.1)
Pyruvate dehydrogenase kinase (EC 2.7.11.2)
Dephospho-(reductase kinase) kinase (EC 2.7.11.3)
3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring) kinase (EC 2.7.11.4)
(isocitrate dehydrogenase (NADP+)) kinase (EC 2.7.11.5)
(tyrosine 3-monooxygenase) kinase (EC 2.7.11.6)
Myosin-heavy-chain kinase (EC 2.7.11.7)
Fas-activated serine/threonine kinase (EC 2.7.11.8)
Goodpasture-antigen-binding protein kinase (EC 2.7.11.9)
  • -
IκB kinase (EC 2.7.11.10)
cAMP-dependent protein kinase (EC 2.7.11.11)
cGMP-dependent protein kinase (EC 2.7.11.12)
Protein kinase C (EC 2.7.11.13)
Rhodopsin kinase (EC 2.7.11.14)
Beta adrenergic receptor kinase (EC 2.7.11.15)
G-protein coupled receptor kinases (EC 2.7.11.16)
Ca2+/calmodulin-dependent (EC 2.7.11.17)
Myosin light-chain kinase (EC 2.7.11.18)
Phosphorylase kinase (EC 2.7.11.19)
Elongation factor 2 kinase (EC 2.7.11.20)
Polo kinase (EC 2.7.11.21)
Serine/threonine-specific protein kinases (EC 2.7.11.21-EC 2.7.11.30)
Polo kinase (EC 2.7.11.21)
Cyclin-dependent kinase (EC 2.7.11.22)
(RNA-polymerase)-subunit kinase (EC 2.7.11.23)
Mitogen-activated protein kinase (EC 2.7.11.24)
MAP3K (EC 2.7.11.25)
Tau-protein kinase (EC 2.7.11.26)
(acetyl-CoA carboxylase) kinase (EC 2.7.11.27)
  • -
Tropomyosin kinase (EC 2.7.11.28)
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Low-density-lipoprotein receptor kinase (EC 2.7.11.29)
  • -
Receptor protein serine/threonine kinase (EC 2.7.11.30)
MAP2K
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