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Holophagae

From Wikipedia, the free encyclopedia
Class of bacteria

Holophagae
Scientific classificationEdit this classification
Domain:Bacteria
Kingdom:Pseudomonadati
Phylum:Acidobacteriota
Class:Holophagae
Fukunaga et al. 2008[1]
Type genus
Holophaga
Liesack et al. 1995
Orders[2]
Synonyms
  • "Holophagia"Oren, Parte & Garrity 2016

Holophagae is a class ofAcidobacteriota.[1]

Phylogeny

[edit]

The currently accepted taxonomy is based on theList of Prokaryotic names with Standing in Nomenclature[2] andNational Center for Biotechnology Information (NCBI).[3] Numbered orders do not yet have any cultured representatives.

16S rRNA based phylogeny[4]16S rRNA basedLTP_10_2024[5][6][7]120 marker proteins basedGTDB 10-RS226[8][9][10]

See also

[edit]

References

[edit]
  1. ^abFukunaga Y, Kurahashi M, Yanagi K, Yokota A, Harayama S. (2008)."Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description ofAcanthopleuribacteraceae fam. nov.,Acanthopleuribacterales ord. nov.,Holophagaceae fam. nov.,Holophagales ord. nov. andHolophagae classis nov. in the phylum "Acidobacteria"".Int J Syst Evol Microbiol.58 (Pt 11):2597–2601.doi:10.1099/ijs.0.65589-0.PMID 18984699.
  2. ^abHolophagae inLPSN;Freese, H. M.; Meier-Kolthoff, J. P.; Sardà Carbasse, J.; Afolayan, A. O.; Göker, M. (29 October 2025). "TYGS and LPSN in 2025: a Global Core Biodata Resource for genome-based classification and nomenclature of prokaryotes within DSMZ Digital Diversity".Nucleic Acids Research.53:D1–D12.doi:10.1093/nar/gkaf1110.
  3. ^Schoch CL; et al."Holophagae".National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved2025-06-05.
  4. ^Dedysh SN, Yilmaz P. (2018)."Refining the taxonomic structure of the phylumAcidobacteria".Int J Syst Evol Microbiol.68 (12):3796–3806.doi:10.1099/ijsem.0.003062.PMID 30325293.S2CID 53502177.
  5. ^"The LTP". Retrieved10 December 2024.
  6. ^"LTP_all tree in newick format". Retrieved10 December 2024.
  7. ^"LTP_10_2024 Release Notes"(PDF). Retrieved10 December 2024.
  8. ^"GTDB release 10-RS226".Genome Taxonomy Database. Retrieved1 May 2025.
  9. ^"bac120_r226.sp_label".Genome Taxonomy Database. Retrieved1 May 2025.
  10. ^"Taxon History".Genome Taxonomy Database. Retrieved1 May 2025.
Prokaryotes:Bacteria classification
Candidate Phyla
Radiation
  • "Elulimicrobiota"
    • "Elulimicrobia"
  • Minisyncoccota
    • "Absconditibacteria"
    • "Andersenbacteria"
    • "Berkelbacteria"
    • "Baikalibacteria"
    • "Dojkabacteriia"
    • "Doudnabacteria"
    • "Gracilibacteriia"
    • "Howlettbacteria"
    • "Katanibacteriia"
    • "Kazanbacteria"
    • "Microgenomatia"
    • Minisyncoccia
    • "Patescibacteriia"
    • "Saccharimonadia"
    • "Torokbacteria"
    • "Wirthbacteria"
"Synergistetes"
"Thermocalda"
"Cyanoprokaryota"
"Firmicutes"
  • Bacillota
  • Bacillota D
  • Bacillota E
    • "Fermentithermobacillia"
    • Sulfobacillia
    • Symbiobacteriia
    • Thermaerobacteria
  • Bacillota G
    • "Hydrogenisporia"
    • Limnochordia
  • "Clostridiota"
    • "Clostridiia"
    • "Thermoanaerobacteria"
    • Thermosediminibacteria
  • "Desulfotomaculota"
    • "Carboxydocellia"
    • "Carboxydothermia"
    • "Dehalobacteriia"
    • Desulfitobacteriia
    • Desulfotomaculia
    • "Moorellia"
    • Peptococcia
    • Syntrophomonadia
    • "Thermacetogeniia"
    • Thermincolia
  • "Halanaerobiaeota"
  • "Selenobacteria"
"Sphingobacteria"
"Planctobacteria"
"Proteobacteria"
Incertae sedis
Incertae sedis
GTDB 10-RS226;LTP_10_2024
Holophagae
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