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High-mobility group

From Wikipedia, the free encyclopedia
Group of proteins

High-Mobility Group or HMG is a group ofchromosomalproteins that are involved in the regulation of DNA-dependent processes such astranscription,replication,recombination, andDNA repair.[1]

History and name

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HMG proteins were originally isolated frommammalian cells, and named according to theirelectrophoretic mobility inpolyacrylamide gels.[2]

Families

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The HMG proteins are subdivided into 3 superfamilies each containing a characteristic functional domain:

Proteins containing any of the abovedomains embedded in their sequence are known as HMG-motif proteins.HMG-box proteins are found in a variety ofeukaryotic organisms.

Other families with HMG-box domain

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Function

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HMG proteins are thought to play a significant role in various human disorders. Disruptions and rearrangements in the genes coding for some of the HMG proteins are associated with some common benign tumors.Antibodies to HMG proteins are found in patients withautoimmune diseases. TheSRY gene on the Y Chromosome, responsible for male sexual differentiation, contains an HMG-Box domain. A member of the HMG family of proteins,HMGB1, has also been shown to have an extracellular activity as achemokine, attractingneutrophils and mononuclear inflammatory cells to the infectedliver.[3] The high-mobility group protein such as HMO1[4] alters DNA architecture by binding, bending and looping. Furthermore, theseHMG-boxDNA-binding proteins increase the flexibility of theDNA upon binding.[5]

In mammaliancells, the HMGnon-histone proteins can modulate the activity of major DNA repair pathways includingbase excision repair,mismatch repair,nucleotide excision repair anddouble-strand break repair.[6]

See also

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References

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  1. ^Rajeswari MR, Jain A (2002)."High-mobility-group chromosomal proteins, HMGA1 as potential tumour markers"(PDF).Current Science.82 (7):838–844.
  2. ^Johns EB (1982).The HMG chromosomal proteins. Boston: Academic Press.ISBN 978-0-12-386050-7.
  3. ^Sitia G, Iannacone M, Müller S, Bianchi ME, Guidotti LG (January 2007)."Treatment with HMGB1 inhibitors diminishes CTL-induced liver disease in HBV transgenic mice".J. Leukoc. Biol.81 (1):100–7.doi:10.1189/jlb.0306173.PMID 16935945.
  4. ^Murugesapillai, Divakaran; McCauley, Micah J.; Huo, Ran; Nelson Holte, Molly H.; Stepanyants, Armen; Maher, L. James; Israeloff, Nathan E.; Williams, Mark C. (2014)."DNA bridging and looping by HMO1 provides a mechanism for stabilizing nucleosome-free chromatin".Nucleic Acids Research.42 (14):8996–9004.doi:10.1093/nar/gku635.PMC 4132745.PMID 25063301.
  5. ^Murugesapillai, Divakaran; McCauley, Micah J.; Maher, L. James; Williams, Mark C. (2017)."Single-molecule studies of high-mobility group B architectural DNA bending proteins".Biophysical Reviews.9 (1):17–40.doi:10.1007/s12551-016-0236-4.PMC 5331113.PMID 28303166.
  6. ^Reeves R. High mobility group (HMG) proteins: Modulators of chromatin structure and DNA repair in mammalian cells. DNA Repair (Amst). 2015 Dec;36:122-136. doi: 10.1016/j.dnarep.2015.09.015. Epub 2015 Sep 16. PMID 26411874

External links

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(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous


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