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HOXD9

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
HOXD9
Identifiers
AliasesHOXD9, HOX4, HOX4C, Hox-4.3, Hox-5.2, homeobox D9
External IDsOMIM:142982;MGI:96210;HomoloGene:8409;GeneCards:HOXD9;OMA:HOXD9 - orthologs
Gene location (Human)
Chromosome 2 (human)
Chr.Chromosome 2 (human)[1]
Chromosome 2 (human)
Genomic location for HOXD9
Genomic location for HOXD9
Band2q31.1Start176,122,719bp[1]
End176,124,937bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for HOXD9
Genomic location for HOXD9
Band2 C3|2 44.13 cMStart74,528,071bp[2]
End74,530,552bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • body of uterus

  • tendon of biceps brachii

  • canal of the cervix

  • vagina

  • ectocervix

  • myometrium

  • muscle layer of sigmoid colon

  • buccal mucosa cell

  • testicle

  • stromal cell of endometrium
Top expressed in
  • Gonadal ridge

  • gastrula

  • decidua

  • medullary collecting duct

  • endothelial cell of lymphatic vessel

  • seminal vesicula

  • medial head of gastrocnemius muscle

  • cumulus cell

  • tail of embryo

  • urothelium
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

3235

15438

Ensembl

ENSG00000128709

ENSMUSG00000043342

UniProt

P28356

P28357

RefSeq (mRNA)

NM_014213

NM_013555

RefSeq (protein)

NP_055028

NP_038583

Location (UCSC)Chr 2: 176.12 – 176.12 MbChr 2: 74.53 – 74.53 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Homeobox protein Hox-D9 is aprotein that in humans is encoded by theHOXD9gene.[5][6][7]

Function

[edit]

This gene belongs to the homeobox family of genes. The homeobox genes encode a highly conserved family of transcription factors that play an important role in morphogenesis in all multicellular organisms. Mammals possess four similar homeobox gene clusters, HOXA, HOXB, HOXC and HOXD, located on different chromosomes, consisting of 9 to 11 genes arranged in tandem. This gene is one of several homeobox HOXD genes located at 2q31-2q37 chromosome regions. Deletions that removed the entire HOXD gene cluster or 5' end of this cluster have been associated with severe limb and genital abnormalities. The exact role of this gene has not been determined.[7]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000128709Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000043342Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^McAlpine PJ, Shows TB (Aug 1990). "Nomenclature for human homeobox genes".Genomics.7 (3): 460.doi:10.1016/0888-7543(90)90186-X.PMID 1973146.
  6. ^Scott MP (Dec 1992). "Vertebrate homeobox gene nomenclature".Cell.71 (4):551–3.doi:10.1016/0092-8674(92)90588-4.PMID 1358459.S2CID 13370372.
  7. ^ab"Entrez Gene: HOXD9 homeobox D9".

Further reading

[edit]

External links

[edit]
PDB gallery
  • 1puf: Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA
    1puf: Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.


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