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HNF1B

From Wikipedia, the free encyclopedia
Mammalian protein found in Homo sapiens
HNF1B
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

2DA6,2H8R

Identifiers
AliasesHNF1B, FJHN, HNF-1B, HNF1beta, HNF2, HPC11, LF-B3, LFB3, MODY5, TCF-2, TCF2, VHNF1, HNF-1-beta, HNF1 homeobox B, T2D, ADTKD3, RCAD
External IDsOMIM:189907;MGI:98505;HomoloGene:396;GeneCards:HNF1B;OMA:HNF1B - orthologs
Gene location (Human)
Chromosome 17 (human)
Chr.Chromosome 17 (human)[1]
Chromosome 17 (human)
Genomic location for HNF1B
Genomic location for HNF1B
Band17q12Start37,686,431bp[1]
End37,745,059bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for HNF1B
Genomic location for HNF1B
Band11 C|11 51.23 cMStart83,740,889bp[2]
End83,796,645bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • body of pancreas

  • gallbladder

  • human kidney

  • mucosa of transverse colon

  • islet of Langerhans

  • right uterine tube

  • duodenum

  • right lobe of liver

  • rectum

  • testicle
Top expressed in
  • right kidney

  • proximal tubule

  • human kidney

  • connecting tubule

  • yolk sac

  • efferent ductule

  • left colon

  • Bowman's capsule

  • transitional epithelium of urinary bladder

  • medullary collecting duct
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6928

21410

Ensembl

ENSG00000276194
ENSG00000275410

ENSMUSG00000020679

UniProt

P35680

P27889

RefSeq (mRNA)

NM_000458
NM_001165923
NM_001304286
NM_006481

NM_001291268
NM_001291269
NM_009330

RefSeq (protein)

NP_000449
NP_001159395
NP_001291215
NP_001159395.1

NP_001278197
NP_001278198
NP_033356

Location (UCSC)Chr 17: 37.69 – 37.75 MbChr 11: 83.74 – 83.8 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

HNF1 homeobox B (hepatocyte nuclear factor 1 homeobox B), also known asHNF1B ortranscription factor 2 (TCF2), is a humangene.

Function

[edit]

HNF1B encodes hepatocyte nuclear factor 1-beta, a protein of thehomeobox-containing basic helix-turn-helix family. The HNF1B protein is believed to formheterodimers with another member of this transcription factor family,HNF1A; depending on the HNF1B isoform, the result may be to activate or inhibit transcription of target genes. Deficiency of HNF1B cause abnormal maternal-Zygote transition and earlyembryogenesis failure.[5][6] Mutation of HNF1B that disrupts normal function has been identified as the cause ofMODY 5 (Maturity-Onset of Diabetes, Type 5). A third human transcript variant is believed to exist based on such a variant in the rat: however, to date such an mRNA species has not been isolated.[7]

See also

[edit]

References

[edit]
  1. ^abcENSG00000275410 GRCh38: Ensembl release 89: ENSG00000276194, ENSG00000275410Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000020679Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Barbacci E, Reber M, Ott MO, et al. (1999). "Variant hepatocyte nuclear factor 1 is required for visceral endoderm specification".Development.126 (21):4795–4805.doi:10.1242/dev.126.21.4795.PMID 10518496.
  6. ^Coffinier C, Thepot D, Babinet C, et al. (1999)."Essential role for the homeoprotein vHNF1/HNF1beta in visceral endoderm differentiation".Development.126 (21):4785–4794.doi:10.1242/dev.126.21.4785.PMID 10518495.
  7. ^"HNF1B HNF1 homeobox B [ Homo sapiens (human) ]".

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.


PDB gallery
  • 2da6: Solution structure of the homeobox domain of Hepatocyte nuclear factor 1-beta (HNF-1beta)
    2da6: Solution structure of the homeobox domain of Hepatocyte nuclear factor 1-beta (HNF-1beta)
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous


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