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HMGA

From Wikipedia, the free encyclopedia
Family of high mobility group proteins
high mobility group AT-hook 1
Identifiers
SymbolHMGA1
Alt. symbolsHMGIY
NCBI gene3159
HGNC5010
OMIM600701
RefSeqNM_145901
UniProtP17096
Other data
LocusChr. 6p21
Search for
StructuresSwiss-model
DomainsInterPro
high mobility group AT-hook 2
Identifiers
SymbolHMGA2
Alt. symbolsHMGIC
NCBI gene8091
HGNC5009
OMIM600698
RefSeqNM_003484
UniProtP52926
Other data
LocusChr. 12q15
Search for
StructuresSwiss-model
DomainsInterPro

HMGA is a family ofhigh mobility group proteins characterized by anAT-hook. They code for a "small, nonhistone, chromatin-associated protein that has no intrinsic transcriptional activity but can modulate transcription by altering the chromatin architecture".[1] Mammals have two orthologs: HMGA1 and HMGA2.

Genomic distribution

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In mouse embryonic stem cells it has been demonstrated that both HMGA proteins binds uniformly to the DNA due to theirAT-hook domains, with a slight preference for AT-rich regions/[2] Such regions tend to lack coding genes, an observation that argues against a direct role in transcriptional control and in agreement with previous studies, suggest that these proteins have a structural role in the chromatin, similar tohistone.

Function

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Normally, when cells are subjected to increasedDNA damage (such as the formation of6-O-methylguanine) this causes an increase inapoptosis (programmed cell death). However, cells with diminished activity for either proteinsHMGA1 orHMGA2 (or both together) are more tolerant of such DNA damage than cells in which these proteins are not diminished.[3] Thus a normal function of the HMGA1 and HMGA2 proteins appears to be to signal the presence of DNA damage leading to induction of apoptosis.[3]

Association with human traits

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Variations in HMGA2 to have a moderate association with adult height.[4][5]

See also

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References

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  1. ^Mayr C, Hemann MT, Bartel DP (March 2007)."Disrupting the pairing between let-7 and Hmga2 enhances oncogenic transformation".Science.315 (5818):1576–1579.Bibcode:2007Sci...315.1576M.doi:10.1126/science.1137999.PMC 2556962.PMID 17322030.
  2. ^Colombo DF, Burger L, Baubec T, Schübeler D (December 2017)."Binding of high mobility group A proteins to the mammalian genome occurs as a function of AT-content".PLOS Genetics.13 (12): e1007102.doi:10.1371/journal.pgen.1007102.PMC 5756049.PMID 29267285.
  3. ^abFujikane R, Komori K, Sekiguchi M, Hidaka M (August 2016)."Function of high-mobility group A proteins in the DNA damage signaling for the induction of apoptosis".Scientific Reports.6: 31714.Bibcode:2016NatSR...631714F.doi:10.1038/srep31714.PMC 4990841.PMID 27538817.
  4. ^"Scientists discover height gene".BBC News. 2007-09-03. Retrieved2007-09-03.
  5. ^Weedon MN, Lettre G, Freathy RM, Lindgren CM, Voight BF, Perry JR, et al. (October 2007)."A common variant of HMGA2 is associated with adult and childhood height in the general population".Nature Genetics.39 (10):1245–1250.doi:10.1038/ng2121.PMC 3086278.PMID 17767157.

External links

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(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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