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HLTF

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
HLTF
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

2MZN,4HRE,4HRH,4S0N,4XZF,4XZG,5BNH,5K5F

Identifiers
AliasesHLTF, HIP116, HIP116A, HLTF1, RNF80, SMARCA3, SNF2L3, ZBU1, helicase-like transcription factor, helicase like transcription factor
External IDsOMIM:603257;MGI:1196437;HomoloGene:30136;GeneCards:HLTF;OMA:HLTF - orthologs
Gene location (Human)
Chromosome 3 (human)
Chr.Chromosome 3 (human)[1]
Chromosome 3 (human)
Genomic location for HLTF
Genomic location for HLTF
Band3q24Start149,030,127bp[1]
End149,086,554bp[1]
Gene location (Mouse)
Chromosome 3 (mouse)
Chr.Chromosome 3 (mouse)[2]
Chromosome 3 (mouse)
Genomic location for HLTF
Genomic location for HLTF
Band3 A2|3 6.15 cMStart20,111,975bp[2]
End20,172,654bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • testicle

  • Pons

  • lateral nuclear group of thalamus

  • pars compacta

  • Epithelium of choroid plexus

  • pars reticulata

  • subthalamic nucleus

  • superior vestibular nucleus

  • external globus pallidus

  • cerebellar vermis
Top expressed in
  • saccule

  • otic placode

  • otic vesicle

  • habenula

  • atrioventricular valve

  • transitional epithelium of urinary bladder

  • mesenteric lymph nodes

  • retinal pigment epithelium

  • blood

  • primitive streak
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6596

20585

Ensembl

ENSG00000071794

ENSMUSG00000002428

UniProt

Q14527

Q6PCN7

RefSeq (mRNA)

NM_003071
NM_139048
NM_001318934
NM_001318935

NM_009210
NM_144959
NM_001355097

RefSeq (protein)

NP_001305863
NP_001305864
NP_003062
NP_620636

NP_033236
NP_001342026

Location (UCSC)Chr 3: 149.03 – 149.09 MbChr 3: 20.11 – 20.17 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Helicase-like transcription factor is anenzyme that in humans is encoded by the HLTFgene.[5][6]

Function

[edit]

This gene encodes a member of theSWI/SNF family. Members of this family havehelicase andATPase activities and are thought to regulate transcription of certain genes by altering thechromatin structure around those genes. The encoded protein contains aRING finger DNA binding motif. Two transcript variants encoding the same protein have been found for this gene. However, use of an alternative translation start site produces an isoform that is truncated at the N-terminus compared to the full-length protein.[6]

HLTF is a double-stranded DNA translocase, one of two human homologs ofSaccharomyces cerevisiaeRAD5 besidesSHPRH (SNF2 histone linker PHD RING helicase), that is able to carry outfork regression, similarly to Rad5.[7]

Interactions

[edit]

HLTF has been shown tointeract withUBE2N,[8]RAD18[8] andUBE2V2[8](see alsoSTRING functional and physical associations network : under the option 'search by name' enter 'protein name' of interest, HLTF, klick on 'GO! ', choose 'organism ', klick on 'continue ->').

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000071794Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000002428Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Lin Y, Sheridan PL, Jones KA, Evans GA (Nov 1995). "The HIP116 SNF2/SW12-related transcription factor gene (SNF2L3) is located on human chromosome 3q25.1-q26.1".Genomics.27 (2):381–2.doi:10.1006/geno.1995.1064.PMID 7558014.
  6. ^ab"Entrez Gene: HLTF helicase-like transcription factor".
  7. ^Unk I, Hajdú I, Blastyák A, Haracska L (Jan 2010). "Role of yeast Rad5 and its human orthologs, HLTF and SHPRH in DNA damage tolerance".DNA Repair (Amst).9 (3):257–67.doi:10.1016/j.dnarep.2009.12.013.PMID 20096653.
  8. ^abcUnk I, Hajdú I, Fátyol K, Hurwitz J, Yoon JH, Prakash L, Prakash S, Haracska L (March 2008)."Human HLTF functions as a ubiquitin ligase for proliferating cell nuclear antigen polyubiquitination".Proc. Natl. Acad. Sci. U.S.A.105 (10):3768–73.Bibcode:2008PNAS..105.3768U.doi:10.1073/pnas.0800563105.PMC 2268824.PMID 18316726.

Further reading

[edit]
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