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HDAC8

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
HDAC8
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1T64,1T67,1T69,1VKG,1W22,2V5W,2V5X,3EW8,3EWF,3EZP,3EZT,3F06,3F07,3F0R,3MZ3,3MZ4,3MZ6,3MZ7,3RQD,3SFF,3SFH,4QA0,4QA1,4QA2,4QA3,4QA4,4QA5,4QA6,4QA7,4RN0,4RN1,4RN2,5DC7,5D1D,5D1C,5DC8,5D1B,5DC5,5DC6,5BWZ

Identifiers
AliasesHDAC8, CDLS5, HD8, HDACL1, MRXS6, RPD3, WTS, CDA07, histone deacetylase 8, KDAC8
External IDsOMIM:300269;MGI:1917565;HomoloGene:41274;GeneCards:HDAC8;OMA:HDAC8 - orthologs
Gene location (Human)
X chromosome (human)
Chr.X chromosome (human)[1]
X chromosome (human)
Genomic location for HDAC8
Genomic location for HDAC8
BandXq13.1Start72,329,516bp[1]
End72,573,101bp[1]
Gene location (Mouse)
X chromosome (mouse)
Chr.X chromosome (mouse)[2]
X chromosome (mouse)
Genomic location for HDAC8
Genomic location for HDAC8
BandX|X DStart101,328,245bp[2]
End101,548,965bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • epithelium of colon

  • left adrenal gland

  • left adrenal cortex

  • right adrenal gland

  • tendon of biceps brachii

  • right adrenal cortex

  • gonad

  • Achilles tendon

  • cerebellar hemisphere

  • anterior pituitary
Top expressed in
  • wall of esophagus

  • mucosa of esophagus

  • epithelium of esophagus

  • ventricular zone

  • Rathke's pouch

  • dentate gyrus of hippocampal formation granule cell

  • lumbar subsegment of spinal cord

  • right kidney

  • zygote

  • embryo
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

55869

70315

Ensembl

ENSG00000147099

ENSMUSG00000067567

UniProt

Q9BY41

Q8VH37

RefSeq (mRNA)
NM_001166418
NM_001166419
NM_001166420
NM_001166422
NM_001166448

NM_018486

NM_027382
NM_001313742

RefSeq (protein)
NP_001159890
NP_001159891
NP_001159892
NP_001159894
NP_001159920

NP_060956

NP_001300671
NP_081658

Location (UCSC)Chr X: 72.33 – 72.57 MbChr X: 101.33 – 101.55 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Histone deacetylase 8 is anenzyme that in humans is encoded by theHDAC8gene.[5][6][7]

Function

[edit]

Histones play a critical role intranscriptional regulation,cell cycle progression, and developmental events. Histoneacetylation / deacetylation alterschromosome structure and affectstranscription factor access to DNA. The protein encoded by this gene belongs to class I of the histone deacetylase/acuc/apha family. It has histone deacetylase activity and represses transcription when tethered to apromoter.[7]

Histone deacetylase 8 is involved in skullmorphogenesis[8] and metabolic control of theERR-alpha /PGC1-alpha transcriptional complex.[9]

Clinical significance

[edit]

HDAC8 has been linked to number of disease states notably toacute myeloid leukemia and is related to actin cytoskeleton in smooth muscle cells.siRNA targeting HDAC8 showed anticancer effects.[10] Inhibition of HDAC8 induced apoptosis has been observed inT cell lymphomas.[11] In addition the HDAC8 enzyme has been implicated in the pathogenesis ofneuroblastoma.[12] Therefore, there has been interest in developing HDAC8 selective inhibitors.[13][14] At least 20 disease-causing mutations in this gene have been discovered.[15]

Interactions

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See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000147099Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000067567Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^McDonell N, Ramser J, Francis F, Vinet MC, Rider S, Sudbrak R, Riesselman L, Yaspo ML, Reinhardt R, Monaco AP, Ross F, Kahn A, Kearney L, Buckle V, Chelly J (May 2000). "Characterization of a highly complex region in Xq13 and mapping of three isodicentric breakpoints associated with preleukemia".Genomics.64 (3):221–9.doi:10.1006/geno.2000.6128.PMID 10756090.
  6. ^Van den Wyngaert I, de Vries W, Kremer A, Neefs J, Verhasselt P, Luyten WH, Kass SU (Aug 2000)."Cloning and characterization of human histone deacetylase 8".FEBS Lett.478 (1–2):77–83.doi:10.1016/S0014-5793(00)01813-5.PMID 10922473.S2CID 12335886.
  7. ^ab"Entrez Gene: HDAC8 histone deacetylase 8".
  8. ^Haberland M, Mokalled MH, Montgomery RL, Olson EN (July 2009)."Epigenetic control of skull morphogenesis by histone deacetylase 8".Genes Dev.23 (14):1625–30.doi:10.1101/gad.1809209.PMC 2714711.PMID 19605684.
  9. ^abWilson BJ, Tremblay AM, Deblois G, Sylvain-Drolet G, Giguère V (July 2010)."An acetylation switch modulates the transcriptional activity of estrogen-related receptor alpha".Mol. Endocrinol.24 (7):1349–58.doi:10.1210/me.2009-0441.PMC 5417470.PMID 20484414.
  10. ^Gallinari P, Di Marco S, Jones P, Pallaoro M, Steinkühler C (March 2007). "HDACs, histone deacetylation and gene transcription: from molecular biology to cancer therapeutics".Cell Res.17 (3):195–211.doi:10.1038/sj.cr.7310149.PMID 17325692.S2CID 30268983.
  11. ^Balasubramanian S, Ramos J, Luo W, Sirisawad M, Verner E, Buggy JJ (May 2008)."A novel histone deacetylase 8 (HDAC8)-specific inhibitor PCI-34051 induces apoptosis in T-cell lymphomas".Leukemia.22 (5):1026–34.doi:10.1038/leu.2008.9.PMID 18256683.
  12. ^Oehme I, Deubzer HE, Wegener D, Pickert D, Linke JP, Hero B, Kopp-Schneider A, Westermann F, Ulrich SM, von Deimling A, Fischer M, Witt O (January 2009)."Histone deacetylase 8 in neuroblastoma tumorigenesis".Clin. Cancer Res.15 (1):91–9.doi:10.1158/1078-0432.CCR-08-0684.PMID 19118036.
  13. ^Patil V, Sodji QH, Kornacki JR, Mrksich M, Oyelere AK (May 2013)."3-Hydroxypyridin-2-thione as novel zinc binding group for selective histone deacetylase inhibition".Journal of Medicinal Chemistry.56 (9):3492–506.doi:10.1021/jm301769u.PMC 3657749.PMID 23547652.
  14. ^Suzuki T, Ota Y, Ri M, Bando M, Gotoh A, Itoh Y, Tsumoto H, Tatum PR, Mizukami T, Nakagawa H, Iida S, Ueda R, Shirahige K, Miyata N (November 2012). "Rapid discovery of highly potent and selective inhibitors of histone deacetylase 8 using click chemistry to generate candidate libraries".Journal of Medicinal Chemistry.55 (22):9562–75.doi:10.1021/jm300837y.PMID 23116147.
  15. ^Šimčíková D, Heneberg P (December 2019)."Refinement of evolutionary medicine predictions based on clinical evidence for the manifestations of Mendelian diseases".Scientific Reports.9 (1): 18577.Bibcode:2019NatSR...918577S.doi:10.1038/s41598-019-54976-4.PMC 6901466.PMID 31819097.

Further reading

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External links

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This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

PDB gallery
  • 1t64: Crystal Structure of human HDAC8 complexed with Trichostatin A
    1t64: Crystal Structure of human HDAC8 complexed with Trichostatin A
  • 1t67: Crystal Structure of Human HDAC8 complexed with MS-344
    1t67: Crystal Structure of Human HDAC8 complexed with MS-344
  • 1t69: Crystal Structure of human HDAC8 complexed with SAHA
    1t69: Crystal Structure of human HDAC8 complexed with SAHA
  • 1vkg: Crystal Structure of Human HDAC8 complexed with CRA-19156
    1vkg: Crystal Structure of Human HDAC8 complexed with CRA-19156
  • 1w22: CRYSTAL STRUCTURE OF INHIBITED HUMAN HDAC8
    1w22: CRYSTAL STRUCTURE OF INHIBITED HUMAN HDAC8
Hydrolases: carbon-nitrogen non-peptide (EC 3.5)
3.5.1: Linear amides /
Amidohydrolases
3.5.2: Cyclic amides/
Amidohydrolases
3.5.3: Linear amidines/
Ureohydrolases
3.5.4: Cyclic amidines/
Aminohydrolases
3.5.5: Nitriles/
Aminohydrolases
3.5.99: Other
Activity
Regulation
Classification
Kinetics
Types
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