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Histone deacetylase 5

From Wikipedia, the free encyclopedia
(Redirected fromHDAC5)
Enzyme found in humans
HDAC5
Identifiers
AliasesHDAC5, HD5, NY-CO-9, histone deacetylase 5
External IDsOMIM:605315;MGI:1333784;HomoloGene:3995;GeneCards:HDAC5;OMA:HDAC5 - orthologs
Gene location (Human)
Chromosome 17 (human)
Chr.Chromosome 17 (human)[1]
Chromosome 17 (human)
Genomic location for HDAC5
Genomic location for HDAC5
Band17q21.31Start44,076,746bp[1]
End44,123,702bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for HDAC5
Genomic location for HDAC5
Band11|11 DStart102,194,432bp[2]
End102,230,166bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • skin of leg

  • skin of abdomen

  • ganglionic eminence

  • muscle of thigh

  • right frontal lobe

  • popliteal artery

  • tibial arteries

  • right hemisphere of cerebellum

  • apex of heart

  • gastric mucosa
Top expressed in
  • neural layer of retina

  • perirhinal cortex

  • entorhinal cortex

  • CA3 field

  • primary visual cortex

  • dentate gyrus of hippocampal formation granule cell

  • superior frontal gyrus

  • lip

  • muscle of thigh

  • central gray substance of midbrain
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

10014

15184

Ensembl

ENSG00000108840

ENSMUSG00000008855

UniProt

Q9UQL6

Q9Z2V6

RefSeq (mRNA)

NM_001015053
NM_005474
NM_139205
NM_001382393

NM_001077696
NM_001284248
NM_001284249
NM_001284250
NM_010412

NM_001361596

RefSeq (protein)

NP_001015053
NP_005465
NP_001369322

n/a

Location (UCSC)Chr 17: 44.08 – 44.12 MbChr 11: 102.19 – 102.23 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Histone deacetylase 5 is anenzyme that in humans is encoded by theHDAC5gene.[5][6][7]

Function

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Histones play a critical role in transcriptional regulation, cell cycle progression, and developmental events. Histone acetylation/deacetylation alterschromosome structure and affectstranscription factor access to DNA. The protein encoded by this gene belongs to the class II histone deacetylase/acuc/apha family. It possesseshistone deacetylase activity and represses transcription when tethered to a promoter. It coimmunoprecipitates only with HDAC3 family member and might form multicomplex proteins. It also interacts with myocyte enhancer factor-2 (MEF2) proteins, resulting in repression of MEF2-dependent genes. This gene is thought to be associated with colon cancer. Two transcript variants encoding different isoforms have been found for this gene.[7]

AMP-activated protein kinase regulation of the glucose transporterGLUT4 occurs byphosphorylation of HDAC5.[8]

HDAC5 is involved inmemory consolidation and suggests that development of more selectiveHDAC inhibitors for the treatment ofAlzheimer's disease should avoid targeting HDAC5.[9] Its function can be effectively examined by siRNA knockdown based on an independent validation.[10]

HDAC5 overexpression inurothelial carcinoma cell lines inhibits long-term proliferation but can promote epithelial-to-mesenchymal transition (EMT)[11]

Interactions

[edit]

Histone deacetylase 5 has been shown tointeract with:

See also

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References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000108840Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000008855Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^abGrozinger CM, Hassig CA, Schreiber SL (April 1999)."Three proteins define a class of human histone deacetylases related to yeast Hda1p".Proceedings of the National Academy of Sciences of the United States of America.96 (9):4868–73.Bibcode:1999PNAS...96.4868G.doi:10.1073/pnas.96.9.4868.PMC 21783.PMID 10220385.
  6. ^Scanlan MJ, Chen YT, Williamson B, Gure AO, Stockert E, Gordan JD, et al. (May 1998). "Characterization of human colon cancer antigens recognized by autologous antibodies".International Journal of Cancer.76 (5):652–8.doi:10.1002/(SICI)1097-0215(19980529)76:5<652::AID-IJC7>3.0.CO;2-P.PMID 9610721.S2CID 916155.
  7. ^ab"Entrez Gene: HDAC5 histone deacetylase 5".
  8. ^McGee SL, van Denderen BJ, Howlett KF, Mollica J, Schertzer JD, Kemp BE, Hargreaves M (April 2008)."AMP-activated protein kinase regulates GLUT4 transcription by phosphorylating histone deacetylase 5".Diabetes.57 (4):860–7.doi:10.2337/db07-0843.PMID 18184930.S2CID 17274354.
  9. ^Agis-Balboa RC, Pavelka Z, Kerimoglu C, Fischer A (January 2013). "Loss of HDAC5 impairs memory function: implications for Alzheimer's disease".Journal of Alzheimer's Disease.33 (1):35–44.doi:10.3233/JAD-2012-121009.hdl:2434/223089.PMID 22914591.
  10. ^Munkácsy G, Sztupinszki Z, Herman P, Bán B, Pénzváltó Z, Szarvas N, Győrffy B (September 2016)."Validation of RNAi Silencing Efficiency Using Gene Array Data shows 18.5% Failure Rate across 429 Independent Experiments".Molecular Therapy: Nucleic Acids.5 (9): e366.doi:10.1038/mtna.2016.66.PMC 5056990.PMID 27673562.
  11. ^Jaguva Vasudevan AA, Hoffmann MJ, Beck ML, Poschmann G, Petzsch P, Wiek C, et al. (April 2019)."HDAC5 Expression in Urothelial Carcinoma Cell Lines Inhibits Long-Term Proliferation but Can Promote Epithelial-to-Mesenchymal Transition".International Journal of Molecular Sciences.20 (9): 2135.doi:10.3390/ijms20092135.PMC 6539474.PMID 31052182.
  12. ^abLemercier C, Brocard MP, Puvion-Dutilleul F, Kao HY, Albagli O, Khochbin S (June 2002)."Class II histone deacetylases are directly recruited by BCL6 transcriptional repressor".The Journal of Biological Chemistry.277 (24):22045–52.doi:10.1074/jbc.M201736200.PMID 11929873.
  13. ^Zhang CL, McKinsey TA, Olson EN (October 2002)."Association of class II histone deacetylases with heterochromatin protein 1: potential role for histone methylation in control of muscle differentiation".Molecular and Cellular Biology.22 (20):7302–12.doi:10.1128/MCB.22.20.7302-7312.2002.PMC 139799.PMID 12242305.
  14. ^Watamoto K, Towatari M, Ozawa Y, Miyata Y, Okamoto M, Abe A, et al. (December 2003). "Altered interaction of HDAC5 with GATA-1 during MEL cell differentiation".Oncogene.22 (57):9176–84.doi:10.1038/sj.onc.1206902.PMID 14668799.S2CID 24491249.
  15. ^abZhang J, Kalkum M, Chait BT, Roeder RG (March 2002)."The N-CoR-HDAC3 nuclear receptor corepressor complex inhibits the JNK pathway through the integral subunit GPS2".Molecular Cell.9 (3):611–23.doi:10.1016/S1097-2765(02)00468-9.PMID 11931768.
  16. ^Fischle W, Dequiedt F, Hendzel MJ, Guenther MG, Lazar MA, Voelter W, Verdin E (January 2002). "Enzymatic activity associated with class II HDACs is dependent on a multiprotein complex containing HDAC3 and SMRT/N-CoR".Molecular Cell.9 (1):45–57.doi:10.1016/S1097-2765(01)00429-4.hdl:11858/00-001M-0000-002C-9FF9-9.PMID 11804585.
  17. ^Grozinger CM, Schreiber SL (July 2000)."Regulation of histone deacetylase 4 and 5 and transcriptional activity by 14-3-3-dependent cellular localization".Proceedings of the National Academy of Sciences of the United States of America.97 (14):7835–40.Bibcode:2000PNAS...97.7835G.doi:10.1073/pnas.140199597.PMC 16631.PMID 10869435.
  18. ^Koipally J, Georgopoulos K (August 2002)."A molecular dissection of the repression circuitry of Ikaros".The Journal of Biological Chemistry.277 (31):27697–705.doi:10.1074/jbc.M201694200.PMID 12015313.
  19. ^Lemercier C, Verdel A, Galloo B, Curtet S, Brocard MP, Khochbin S (May 2000)."mHDA1/HDAC5 histone deacetylase interacts with and represses MEF2A transcriptional activity".The Journal of Biological Chemistry.275 (20):15594–9.doi:10.1074/jbc.M908437199.PMID 10748098.
  20. ^Castet A, Boulahtouf A, Versini G, Bonnet S, Augereau P, Vignon F, et al. (2004)."Multiple domains of the Receptor-Interacting Protein 140 contribute to transcription inhibition".Nucleic Acids Research.32 (6):1957–66.doi:10.1093/nar/gkh524.PMC 390375.PMID 15060175.
  21. ^abHuang EY, Zhang J, Miska EA, Guenther MG, Kouzarides T, Lazar MA (January 2000)."Nuclear receptor corepressors partner with class II histone deacetylases in a Sin3-independent repression pathway".Genes & Development.14 (1):45–54.doi:10.1101/gad.14.1.45.PMC 316335.PMID 10640275.
  22. ^Vega RB, Harrison BC, Meadows E, Roberts CR, Papst PJ, Olson EN, McKinsey TA (October 2004)."Protein kinases C and D mediate agonist-dependent cardiac hypertrophy through nuclear export of histone deacetylase 5".Molecular and Cellular Biology.24 (19):8374–85.doi:10.1128/MCB.24.19.8374-8385.2004.PMC 516754.PMID 15367659.
  23. ^Chauchereau A, Mathieu M, de Saintignon J, Ferreira R, Pritchard LL, Mishal Z, et al. (November 2004). "HDAC4 mediates transcriptional repression by the acute promyelocytic leukaemia-associated protein PLZF".Oncogene.23 (54):8777–84.doi:10.1038/sj.onc.1208128.PMID 15467736.S2CID 26092755.

Further reading

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External links

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This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

Hydrolases: carbon-nitrogen non-peptide (EC 3.5)
3.5.1: Linear amides /
Amidohydrolases
3.5.2: Cyclic amides/
Amidohydrolases
3.5.3: Linear amidines/
Ureohydrolases
3.5.4: Cyclic amidines/
Aminohydrolases
3.5.5: Nitriles/
Aminohydrolases
3.5.99: Other
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