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Germ cell nuclear factor

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
NR6A1
Identifiers
AliasesNR6A1, CT150, GCNF, GCNF1, NR61, RTR, hGCNF, hRTR, nuclear receptor subfamily 6 group A member 1
External IDsOMIM:602778;MGI:1352459;HomoloGene:36308;GeneCards:NR6A1;OMA:NR6A1 - orthologs
Gene location (Human)
Chromosome 9 (human)
Chr.Chromosome 9 (human)[1]
Chromosome 9 (human)
Genomic location for NR6A1
Genomic location for NR6A1
Band9q33.3Start124,517,275bp[1]
End124,771,311bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for NR6A1
Genomic location for NR6A1
Band2|2 BStart38,613,382bp[2]
End38,817,700bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • testicle

  • gonad

  • oocyte

  • secondary oocyte

  • buccal mucosa cell

  • right testis

  • left testis

  • sperm

  • left lobe of thyroid gland

  • right lobe of thyroid gland
Top expressed in
  • primitive streak

  • spermatid

  • epiblast

  • seminiferous tubule

  • secondary oocyte

  • lumbar spinal ganglion

  • zygote

  • spermatocyte

  • primary oocyte

  • yolk sac
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

2649

14536

Ensembl

ENSG00000148200

ENSMUSG00000063972

UniProt

Q15406

Q64249

RefSeq (mRNA)

NM_001278546
NM_001489
NM_033334
NM_033335

NM_001159548
NM_001159549
NM_010264

RefSeq (protein)

NP_001265475
NP_001480
NP_201591
NP_201591.2

NP_001153020
NP_001153021
NP_034394

Location (UCSC)Chr 9: 124.52 – 124.77 MbChr 2: 38.61 – 38.82 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Thegerm cell nuclear factor (GCNF), also known asRTR (retinoid receptor-related testis-associated receptor) orNR6A1 (nuclear receptor subfamily 6, group A, member 1), is aprotein that in humans is encoded by theNR6A1gene.[5][6] GCNF is a member of thenuclear receptor family ofintracellulartranscription factors .

In adults, GCNH is expressed mainly in thegerm cells ofgonads and is involved in the regulation ofembryogenesis and germ celldifferentiation.[7]

Its expression pattern suggests that it may be involved in neurogenesis and germ cell development. The protein can homodimerize and bind DNA, but in vivo targets have not been identified. The gene expresses three alternatively spliced transcript variants.[8]

In cells undergoinghomologous recombination duringmeiosis,DNA intermediates are processed as an essential step in the exchange of information between parentalhomologous chromosomes. Ineukaryotes the RTR complex, which consists of atype IA topoisomerase, aRecQ helicase and the structural proteinRMI1, is employed in processing DNA recombination intermediates.[9]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000148200Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000063972Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Lei W, Hirose T, Zhang LX, Adachi H, Spinella MJ, Dmitrovsky E, Jetten AM (Apr 1997). "Cloning of the human orphan receptor germ cell nuclear factor/retinoid receptor-related testis-associated receptor and its differential regulation during embryonal carcinoma cell differentiation".Journal of Molecular Endocrinology.18 (2):167–76.doi:10.1677/jme.0.0180167.PMID 9134503.
  6. ^Süsens U, Borgmeyer U (Dec 1996). "Characterization of the human germ cell nuclear factor gene".Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression.1309 (3):179–82.doi:10.1016/s0167-4781(96)00157-1.PMID 8982251.
  7. ^Zechel C (Dec 2005)."The germ cell nuclear factor (GCNF)".Molecular Reproduction and Development.72 (4):550–6.doi:10.1002/mrd.20377.PMID 16155958.S2CID 39315293.
  8. ^"Entrez Gene: NR6A1 nuclear receptor subfamily 6, group A, member 1".
  9. ^Knoll A, Schröpfer S, Puchta H (2014)."The RTR complex as caretaker of genome stability and its unique meiotic function in plants".Front Plant Sci.5: 33.Bibcode:2014FrPS....5...33K.doi:10.3389/fpls.2014.00033.PMC 3921566.PMID 24575106.

Further reading

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External links

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(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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