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GTF2I

From Wikipedia, the free encyclopedia
Protein-coding gene in humans
GTF2I
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

2D9B,2DN4,2ED2,2EJE

Identifiers
AliasesGTF2I, BAP135, BTKAP1, DIWS, GTFII-I, IB291, SPIN, TFII-I, WBS, WBSCR6, general transcription factor IIi
External IDsOMIM:601679;MGI:1202722;HomoloGene:7748;GeneCards:GTF2I;OMA:GTF2I - orthologs
Gene location (Human)
Chromosome 7 (human)
Chr.Chromosome 7 (human)[1]
Chromosome 7 (human)
Genomic location for GTF2I
Genomic location for GTF2I
Band7q11.23Start74,650,231bp[1]
End74,760,692bp[1]
Gene location (Mouse)
Chromosome 5 (mouse)
Chr.Chromosome 5 (mouse)[2]
Chromosome 5 (mouse)
Genomic location for GTF2I
Genomic location for GTF2I
Band5 G2|5 74.48 cMStart134,237,834bp[2]
End134,314,760bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • ganglionic eminence

  • epithelium of colon

  • sural nerve

  • ventricular zone

  • right uterine tube

  • right adrenal cortex

  • right lobe of thyroid gland

  • left lobe of thyroid gland

  • right ovary

  • body of pancreas
Top expressed in
  • utricle

  • spermatocyte

  • molar

  • primitive streak

  • vestibular sensory epithelium

  • superior surface of tongue

  • medullary collecting duct

  • renal corpuscle

  • retinal pigment epithelium

  • ciliary body
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

2969

14886

Ensembl

ENSG00000263001

ENSMUSG00000060261

UniProt

P78347

Q9ESZ8

RefSeq (mRNA)
NM_001163636
NM_001280800
NM_001518
NM_032999
NM_033000

NM_033001

NM_001080746
NM_001080747
NM_001080748
NM_001080749
NM_010365

NM_001359062
NM_001359063
NM_001359064
NM_001359065
NM_001359066
NM_001359067

RefSeq (protein)
NP_001157108
NP_001267729
NP_001509
NP_127492
NP_127493

NP_127494

NP_001074215
NP_001074216
NP_001074217
NP_001074218
NP_034495

NP_001345991
NP_001345992
NP_001345993
NP_001345994
NP_001345995
NP_001345996

Location (UCSC)Chr 7: 74.65 – 74.76 MbChr 5: 134.24 – 134.31 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

General transcription factor II-I is aprotein that in humans is encoded by theGTF2Igene.[5][6][7]

Function

[edit]

This gene encodes a multifunctional phosphoprotein, TFII-I, with roles in transcription and signal transduction. Haploinsuffiency (deletion of one copy) of the GTF2I gene is noted inWilliams-Beuren syndrome, a multisystem developmental disorder caused by the deletion of contiguous genes at chromosome 7q11.23. It is duplicated in the7q11.23 duplication syndrome.[8] The exon(s) encoding 5' UTR has not been fully defined, but this gene is known to contain at least 34 exons, and its alternative splicing generates 4 transcript variants in humans.[7] A single gain-of-function point mutation in GTF2I is also found in certain Thymomas. Single nucleotide polymorphism (SNP) in GTF2I is correlated to autoimmune disorders.

Interactions

[edit]

GTF2I has been shown tointeract with:

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000263001Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000060261Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^abGrueneberg DA, Henry RW, Brauer A, Novina CD, Cheriyath V, Roy AL, Gilman M (Oct 1997)."A multifunctional DNA-binding protein that promotes the formation of serum response factor/homeodomain complexes: identity to TFII-I".Genes & Development.11 (19):2482–93.doi:10.1101/gad.11.19.2482.PMC 316568.PMID 9334314.
  6. ^abYang W, Desiderio S (Jan 1997)."BAP-135, a target for Bruton's tyrosine kinase in response to B cell receptor engagement".Proceedings of the National Academy of Sciences of the United States of America.94 (2):604–9.Bibcode:1997PNAS...94..604Y.doi:10.1073/pnas.94.2.604.PMC 19560.PMID 9012831.
  7. ^ab"Entrez Gene: GTF2I general transcription factor II, i".
  8. ^Roy AL (June 2017)."Pathophysiology of TFII-I: Old Guard Wearing New Hats".Trends in Molecular Medicine.23 (6):501–511.doi:10.1016/j.molmed.2017.04.002.PMC 5504908.PMID 28461154.
  9. ^Sacristán C, Tussié-Luna MI, Logan SM, Roy AL (Feb 2004)."Mechanism of Bruton's tyrosine kinase-mediated recruitment and regulation of TFII-I".The Journal of Biological Chemistry.279 (8):7147–58.doi:10.1074/jbc.M303724200.PMID 14623887.
  10. ^Novina CD, Kumar S, Bajpai U, Cheriyath V, Zhang K, Pillai S, Wortis HH, Roy AL (Jul 1999)."Regulation of nuclear localization and transcriptional activity of TFII-I by Bruton's tyrosine kinase".Molecular and Cellular Biology.19 (7):5014–24.doi:10.1128/mcb.19.7.5014.PMC 84330.PMID 10373551.
  11. ^abWen YD, Cress WD, Roy AL, Seto E (Jan 2003)."Histone deacetylase 3 binds to and regulates the multifunctional transcription factor TFII-I".The Journal of Biological Chemistry.278 (3):1841–7.doi:10.1074/jbc.M206528200.PMID 12393887.
  12. ^Tussié-Luna MI, Bayarsaihan D, Seto E, Ruddle FH, Roy AL (Oct 2002)."Physical and functional interactions of histone deacetylase 3 with TFII-I family proteins and PIASxbeta".Proceedings of the National Academy of Sciences of the United States of America.99 (20):12807–12.Bibcode:2002PNAS...9912807T.doi:10.1073/pnas.192464499.PMC 130541.PMID 12239342.
  13. ^Hakimi MA, Dong Y, Lane WS, Speicher DW, Shiekhattar R (Feb 2003)."A candidate X-linked mental retardation gene is a component of a new family of histone deacetylase-containing complexes".The Journal of Biological Chemistry.278 (9):7234–9.doi:10.1074/jbc.M208992200.PMID 12493763.
  14. ^Kim DW, Cochran BH (Feb 2000)."Extracellular signal-regulated kinase binds to TFII-I and regulates its activation of the c-fos promoter".Molecular and Cellular Biology.20 (4):1140–8.doi:10.1128/mcb.20.4.1140-1148.2000.PMC 85232.PMID 10648599.
  15. ^Roy AL, Carruthers C, Gutjahr T, Roeder RG (Sep 1993). "Direct role for Myc in transcription initiation mediated by interactions with TFII-I".Nature.365 (6444):359–61.Bibcode:1993Natur.365..359R.doi:10.1038/365359a0.PMID 8377829.S2CID 4354157.
  16. ^Casteel DE, Zhuang S, Gudi T, Tang J, Vuica M, Desiderio S, Pilz RB (Aug 2002)."cGMP-dependent protein kinase I beta physically and functionally interacts with the transcriptional regulator TFII-I".The Journal of Biological Chemistry.277 (35):32003–14.doi:10.1074/jbc.M112332200.PMID 12082086.
  17. ^Kim DW, Cheriyath V, Roy AL, Cochran BH (Jun 1998)."TFII-I enhances activation of the c-fos promoter through interactions with upstream elements".Molecular and Cellular Biology.18 (6):3310–20.doi:10.1128/mcb.18.6.3310.PMC 108912.PMID 9584171.
  18. ^Roy AL, Du H, Gregor PD, Novina CD, Martinez E, Roeder RG (Dec 1997)."Cloning of an inr- and E-box-binding protein, TFII-I, that interacts physically and functionally with USF1".The EMBO Journal.16 (23):7091–104.doi:10.1093/emboj/16.23.7091.PMC 1170311.PMID 9384587.
  19. ^Roy AL, Meisterernst M, Pognonec P, Roeder RG (Nov 1991). "Cooperative interaction of an initiator-binding transcription initiation factor and the helix-loop-helix activator USF".Nature.354 (6350):245–8.Bibcode:1991Natur.354..245R.doi:10.1038/354245a0.PMID 1961251.S2CID 4260885.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

PDB gallery
  • 1q60: Solution Structure of RSGI RUH-004, a GTF2I domain in Mouse cDNA
    1q60: Solution Structure of RSGI RUH-004, a GTF2I domain in Mouse cDNA
  • 2d9b: Solution Structure of RSGI RUH-052, a GTF2I domain in human cDNA
    2d9b: Solution Structure of RSGI RUH-052, a GTF2I domain in human cDNA
  • 2dn4: Solution Structure of RSGI RUH-060, a GTF2I domain in human cDNA
    2dn4: Solution Structure of RSGI RUH-060, a GTF2I domain in human cDNA
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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