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GDF5

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
GDF5
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1WAQ,2BHK,3EVS,3QB4

Identifiers
AliasesGDF5, BDA1C, BMP-14, BMP14, CDMP1, LAP-4, LAP4, OS5, SYM1B, SYNS2, growth differentiation factor 5, DUPANS
External IDsOMIM:601146;MGI:95688;HomoloGene:468;GeneCards:GDF5;OMA:GDF5 - orthologs
Gene location (Human)
Chromosome 20 (human)
Chr.Chromosome 20 (human)[1]
Chromosome 20 (human)
Genomic location for GDF5
Genomic location for GDF5
Band20q11.22Start35,433,347bp[1]
End35,454,746bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for GDF5
Genomic location for GDF5
Band2 H1|2 77.26 cMStart155,782,943bp[2]
End155,787,287bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • parotid gland

  • pericardium

  • cartilage tissue

  • synovial joint

  • synovial membrane

  • oral mucosa

  • minor salivary glands

  • sensory nervous system

  • pharynx

  • upper respiratory tract
Top expressed in
  • finger

  • elbow

  • hand joint

  • joints of the foot

  • lacrimal gland

  • interphalangeal joint of hand

  • parotid gland

  • annulus fibrosus disci intervertebralis

  • molar

  • cuneiform bones
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

8200

14563

Ensembl

ENSG00000125965

ENSMUSG00000038259

UniProt

P43026

P43027

RefSeq (mRNA)

NM_000557
NM_001319138

NM_008109

RefSeq (protein)

NP_000548
NP_001306067

NP_032135

Location (UCSC)Chr 20: 35.43 – 35.45 MbChr 2: 155.78 – 155.79 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Growth/differentiation factor 5 is aprotein that in humans is encoded by theGDF5gene.[5][6][7]

The protein encoded by this gene is closely related to the bone morphogenetic protein (BMP) family and is a member of theTGF-beta superfamily. This group of proteins is characterized by a polybasic proteolytic processing site which is cleaved to produce a mature protein containing seven conserved cysteine residues. The members of this family are regulators of cell growth and differentiation in both embryonic and adult tissues. Mutations in this gene are associated withacromesomelic dysplasia, Hunter-Thompson type;brachydactyly, type C; andosteochondrodysplasia, Grebe type. These associations confirm that the gene product plays a role in skeletal development.[7]

GDF5 is expressed in the developing central nervous system,[8] and has a role in skeletal and joint development.[9][10][11] It also increases the survival ofneurones that respond to theneurotransmitterdopamine, and is a potential therapeutic molecule associated with Parkinson's disease.[12]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000125965Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000038259Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Polinkovsky A, Robin NH, Thomas JT, Irons M, Lynn A, Goodman FR, Reardon W, Kant SG, Brunner HG, van der Burgt I, Chitayat D, McGaughran J, Donnai D, Luyten FP, Warman ML (Oct 1997). "Mutations in CDMP1 cause autosomal dominant brachydactyly type C".Nat Genet.17 (1):18–9.doi:10.1038/ng0997-18.hdl:2066/24464.PMID 9288091.S2CID 6580906.
  6. ^Thomas JT, Kilpatrick MW, Lin K, Erlacher L, Lembessis P, Costa T, Tsipouras P, Luyten FP (Oct 1997). "Disruption of human limb morphogenesis by a dominant negative mutation in CDMP1".Nat Genet.17 (1):58–64.doi:10.1038/ng0997-58.PMID 9288098.S2CID 31479619.
  7. ^ab"Entrez Gene: GDF5 growth differentiation factor 5 (cartilage-derived morphogenetic protein-1)".
  8. ^O'Keeffe G, Dockery P, Sullivan A (2004). "Effects of growth/differentiation factor 5 on the survival and morphology of embryonic rat midbrain dopaminergic neurones in vitro".J Neurocytol.33 (5):479–88.doi:10.1007/s11068-004-0511-y.PMID 15906156.S2CID 25940876.
  9. ^Buxton P, Edwards C, Archer C, Francis-West P (2001). "Growth/differentiation factor-5 (GDF-5) and skeletal development".J Bone Joint Surg Am. 83-A Suppl 1 (Pt 1): S23–30.PMID 11263662.
  10. ^Francis-West P, Abdelfattah A, Chen P, Allen C, Parish J, Ladher R, Allen S, MacPherson S, Luyten F, Archer C (1999). "Mechanisms of GDF-5 action during skeletal development".Development.126 (6):1305–15.doi:10.1242/dev.126.6.1305.PMID 10021348.
  11. ^Francis-West P, Parish J, Lee K, Archer C (1999). "BMP/GDF-signalling interactions during synovial joint development".Cell Tissue Res.296 (1):111–9.doi:10.1007/s004410051272.PMID 10199971.S2CID 21942870.
  12. ^Sullivan A, O'Keeffe G (2005)."The role of growth/differentiation factor 5 (GDF5) in the induction and survival of midbrain dopaminergic neurones: relevance to Parkinson's disease treatment".J Anat.207 (3):219–26.doi:10.1111/j.1469-7580.2005.00447.x.PMC 1571542.PMID 16185246.

Further reading

[edit]
PDB gallery
  • 1waq: CRYSTAL STRUCTURE OF HUMAN GROWTH AND DIFFERENTIATION FACTOR 5 (GDF-5)
    1waq: CRYSTAL STRUCTURE OF HUMAN GROWTH AND DIFFERENTIATION FACTOR 5 (GDF-5)
  • 2bhk: CRYSTAL STRUCTURE OF HUMAN GROWTH AND DIFFERENTIATION FACTOR 5 (GDF5)
    2bhk: CRYSTAL STRUCTURE OF HUMAN GROWTH AND DIFFERENTIATION FACTOR 5 (GDF5)
TGF beta superfamily of ligands
Ligand ofACVR orTGFBR
Ligand ofBMPR
TGF beta receptors
(Activin,BMP,family)
TGFBR1:
TGFBR2:
TGFBR3:
Transducers/SMAD
Ligand inhibitors
Coreceptors
Other
Type I
ALK1 (ACVRL1)
ALK2 (ACVR1A)
ALK3 (BMPR1A)
ALK4 (ACVR1B)
ALK5 (TGFβR1)
ALK6 (BMPR1B)
ALK7 (ACVR1C)
Type II
TGFβR2
BMPR2
ACVR2A (ACVR2)
ACVR2B
AMHR2 (AMHR)
Type III
TGFβR3 (β-glycan)
Unsorted
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