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GATA6

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
GATA6
Identifiers
AliasesGATA6, GATA binding protein 6
External IDsOMIM:601656;MGI:107516;HomoloGene:68449;GeneCards:GATA6;OMA:GATA6 - orthologs
Gene location (Human)
Chromosome 18 (human)
Chr.Chromosome 18 (human)[1]
Chromosome 18 (human)
Genomic location for GATA6
Genomic location for GATA6
Band18q11.2Start22,169,589bp[1]
End22,202,528bp[1]
Gene location (Mouse)
Chromosome 18 (mouse)
Chr.Chromosome 18 (mouse)[2]
Chromosome 18 (mouse)
Genomic location for GATA6
Genomic location for GATA6
Band18 A1|18 5.63 cMStart11,052,064bp[2]
End11,085,635bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • germinal epithelium

  • parietal pleura

  • jejunal mucosa

  • pylorus

  • right ventricle

  • cardiac muscle tissue of right atrium

  • right ovary

  • left ovary

  • lower lobe of lung

  • left adrenal gland
Top expressed in
  • atrium

  • atrioventricular valve

  • epithelium of stomach

  • endocardial cushion

  • right ventricle

  • pyloric antrum

  • migratory enteric neural crest cell

  • morula

  • semi-lunar valve

  • septum transversum
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

2627

14465

Ensembl

ENSG00000141448

ENSMUSG00000005836

UniProt

Q92908

Q61169

RefSeq (mRNA)

NM_005257

NM_010258

RefSeq (protein)

NP_005248

NP_034388

Location (UCSC)Chr 18: 22.17 – 22.2 MbChr 18: 11.05 – 11.09 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Transcription factor GATA-6, also known asGATA-binding factor 6 (GATA6), isprotein that in humans is encoded by theGATA6gene.[5] The gene product preferentially binds (A/T/C)GAT(A/T)(A) of theconsensus binding sequence.[6]

Clinical significance

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Mutations in the gene have been linked with pancreaticagenesis andcongenital heart defects.[7]

Lung Endodermal Epithelial Development

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GATA-6, azinc finger transcription factor, is important in theendodermal differentiation of organ tissues.[8] It is also indicated in proper lung development by controlling the late differentiation stages of alveolar epithelium and aquaporin-5 promoter activation. Furthermore, GATA-6 has been linked to the production of LIF, a cytokine that encourages proliferation of endodermal embryonic stem cells and blocks early epiblast differentiation. If left unregulated in the developing embryo, this cytokine production and chemical signal contributes to the phenotypes discussed further below.[9]

Upon the disruption of GATA-6 in an embryo, the distal lung epithelial development is stunted in transgenic mice models[8] Theprogenitor cells, or stem cells, for alveolar epithelial tissues develop and are specified appropriately, however further differentiation does not occur. Also the distal-proximal bronchiole development is affected, resulting in a reduced quantity of airway exchange sites.[8]

This branching deficit, which will cause bilateralpulmonary hypoplasia after birth, has been locally associated with areas lacking differentiated alveolar epithelium, implicating this phenotype as inherent to endodermal function, and thus may be indirectly linked to improper GATA-6 expression.[10][11] That is, a deficit of bronchiole branching may not be a result of direct transcriptional error in GATA-6, but rather a side effect of such an error.

See also

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References

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  1. ^abcGRCh38: Ensembl release 89: ENSG00000141448Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000005836Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^"Entrez Gene: GATA6 GATA binding protein 6".
  6. ^Sakai Y, Nakagawa R, Sato R, Maeda M (1998). "Selection of DNA binding sites for human transcriptional regulator GATA-6".Biochem Biophys Res Commun.250 (3):682–688.Bibcode:1998BBRC..250..682S.doi:10.1006/bbrc.1998.9374.PMID 9784406.
  7. ^Chao CS, McKnight KD, Cox KL, Chang AL, Kim SK, Feldman BJ (2015)."Novel GATA6 Mutations in Patients with Pancreatic Agenesis and Congenital Heart Malformations".PLOS ONE.10 (2) e0118449.Bibcode:2015PLoSO..1018449C.doi:10.1371/journal.pone.0118449.PMC 4338276.PMID 25706805.
  8. ^abcYang H, Lu MM, Zhang L, Whitsett JA, Morrisey EE (May 2002). "GATA6 regulates differentiation of distal lung epithelium".Development.129 (9):2233–46.doi:10.1242/dev.129.9.2233.PMID 11959831.
  9. ^Morgani SM, Brickman JM (October 2015)."LIF supports primitive endoderm expansion during pre-implantation development".Development.142 (20) dev.125021:3488–99.doi:10.1242/dev.125021.hdl:20.500.11820/9c72866a-3d10-4e07-89eb-1c0bb12a18e5.PMID 26395492.
  10. ^Keijzer R, van Tuyl M, Meijers C, Post M, Tibboel D, Grosveld F, Koutsourakis M (February 2001)."The transcription factor GATA6 is essential for branching morphogenesis and epithelial cell differentiation during fetal pulmonary development".Development.128 (4):503–11.doi:10.1242/dev.128.4.503.hdl:1765/9590.PMID 11171334.
  11. ^Rennie J (2012).Rennie & Robertson's Textbook on Neonatology. Elsevier Health Sciences.ISBN 978-0-7020-3479-4.

Further reading

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External links

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(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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