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GABPA

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
GABPA
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1AWC,1SXD,2JUO

Identifiers
AliasesGABPA, E4TF1-60, E4TF1A, NFT2, NRF2, NRF2A, RCH04A07, GA binding protein transcription factor alpha subunit, GA binding protein transcription factor subunit alpha
External IDsOMIM:600609;MGI:95610;HomoloGene:1543;GeneCards:GABPA;OMA:GABPA - orthologs
Gene location (Human)
Chromosome 21 (human)
Chr.Chromosome 21 (human)[1]
Chromosome 21 (human)
Genomic location for GABPA
Genomic location for GABPA
Band21q21.3Start25,734,570bp[1]
End25,772,460bp[1]
Gene location (Mouse)
Chromosome 16 (mouse)
Chr.Chromosome 16 (mouse)[2]
Chromosome 16 (mouse)
Genomic location for GABPA
Genomic location for GABPA
Band16 C3.3|16 46.92 cMStart84,631,813bp[2]
End84,660,667bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • Achilles tendon

  • ventricular zone

  • ganglionic eminence

  • thymus

  • skin of arm

  • synovial membrane

  • gonad

  • smooth muscle tissue

  • synovial joint

  • germinal epithelium
Top expressed in
  • genital tubercle

  • tail of embryo

  • Paneth cell

  • dermis

  • abdominal wall

  • migratory enteric neural crest cell

  • atrioventricular valve

  • vas deferens

  • left lung lobe

  • Gonadal ridge
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

2551

14390

Ensembl

ENSG00000154727

ENSMUSG00000008976

UniProt

Q06546
Q8IYS3

Q00422

RefSeq (mRNA)

NM_001197297
NM_002040

NM_008065

RefSeq (protein)

NP_001184226
NP_002031
NP_002031.2

NP_032091

Location (UCSC)Chr 21: 25.73 – 25.77 MbChr 16: 84.63 – 84.66 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

GA-binding protein alpha chain is aprotein that in humans is encoded by theGABPAgene.[5]

Function

[edit]

This gene encodes one of three GA-binding proteintranscription factorsubunits which functions as aDNA-binding subunit. Since this subunit shares identity with a subunit encoding thenuclear respiratory factor 2 gene, it is likely involved in activation ofcytochrome c oxidaseexpression and nuclear control ofmitochondrial function. This subunit also shares identity with a subunit constituting the transcription factor E4TF1, responsible for expression of theadenovirus E4 gene. Because of its chromosomal localization and ability to formheterodimers with otherpolypeptides, this gene may play a role in theDown syndromephenotype.[6]

Interactions

[edit]

GABPA has been shown tointeract withHost cell factor C1,[7]Sp1 transcription factor[8] andSp3 transcription factor.[8]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000154727Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000008976Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Watanabe H, Sawada J, Yano K, Yamaguchi K, Goto M, Handa H (Mar 1993)."cDNA cloning of transcription factor E4TF1 subunits with Ets and notch motifs".Molecular and Cellular Biology.13 (3):1385–91.doi:10.1128/MCB.13.3.1385.PMC 359448.PMID 8441384.
  6. ^"Entrez Gene: GABPA GA binding protein transcription factor, alpha subunit 60kDa".
  7. ^Vogel JL, Kristie TM (Feb 2000)."The novel coactivator C1 (HCF) coordinates multiprotein enhancer formation and mediates transcription activation by GABP".The EMBO Journal.19 (4):683–90.doi:10.1093/emboj/19.4.683.PMC 305606.PMID 10675337.
  8. ^abGalvagni F, Capo S, Oliviero S (Mar 2001)."Sp1 and Sp3 physically interact and co-operate with GABP for the activation of the utrophin promoter"(PDF).Journal of Molecular Biology.306 (5):985–96.doi:10.1006/jmbi.2000.4335.hdl:2318/141203.PMID 11237613.

Further reading

[edit]

External links

[edit]
PDB gallery
  • 1awc: MOUSE GABP ALPHA/BETA DOMAIN BOUND TO DNA
    1awc: MOUSE GABP ALPHA/BETA DOMAIN BOUND TO DNA
  • 1sxd: Solution Structure of the Pointed (PNT) Domain from mGABPa
    1sxd: Solution Structure of the Pointed (PNT) Domain from mGABPa
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous


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