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Forkhead box protein O1

From Wikipedia, the free encyclopedia
Protein
FOXO1
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

3CO6,3CO7,3COA,4LG0

Identifiers
AliasesFOXO1, FKH1, FKHR, FOXO1A, forkhead box O1
External IDsOMIM:136533;MGI:1890077;HomoloGene:1527;GeneCards:FOXO1;OMA:FOXO1 - orthologs
Gene location (Human)
Chromosome 13 (human)
Chr.Chromosome 13 (human)[1]
Chromosome 13 (human)
Genomic location for FOXO1
Genomic location for FOXO1
Band13q14.11Start40,555,667bp[1]
End40,666,641bp[1]
Gene location (Mouse)
Chromosome 3 (mouse)
Chr.Chromosome 3 (mouse)[2]
Chromosome 3 (mouse)
Genomic location for FOXO1
Genomic location for FOXO1
Band3 C|3 23.19 cMStart52,175,757bp[2]
End52,260,642bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • decidua

  • synovial joint

  • synovial membrane

  • pericardium

  • middle frontal gyrus

  • left ovary

  • right ovary

  • tendon of biceps brachii

  • Achilles tendon

  • myometrium
Top expressed in
  • secondary oocyte

  • molar

  • primary oocyte

  • zygote

  • dorsal striatum

  • aortic valve

  • ascending aorta

  • lymph node

  • Paneth cell

  • vestibular membrane of cochlear duct
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

2308

56458

Ensembl

ENSG00000150907

ENSMUSG00000044167

UniProt

Q12778

Q9R1E0

RefSeq (mRNA)

NM_002015

NM_019739

RefSeq (protein)

NP_002006

NP_062713

Location (UCSC)Chr 13: 40.56 – 40.67 MbChr 3: 52.18 – 52.26 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Forkhead box protein O1 (FOXO1), also known asforkhead in rhabdomyosarcoma (FKHR), is aprotein that in humans is encoded by theFOXO1gene.[5] FOXO1 is atranscription factor that plays important roles in regulation ofgluconeogenesis andglycogenolysis byinsulin signaling, and is also central to the decision for a preadipocyte to commit toadipogenesis.[6] It is primarily regulated throughphosphorylation on multiple residues; itstranscriptional activity is dependent on its phosphorylation state.[7][8]

Function

[edit]

Adipogenesis

[edit]
FOXO1-dependent inhibition of adipogenesis

FOXO1 negatively regulatesadipogenesis.[9] Presently, the exact mechanism by which this is accomplished is not entirely understood. In the currently accepted model, FOXO1 negatively regulates adipogenesis by binding to the promoter sites ofPPARG and preventing its transcription. Rising levels of PPARG are required to initiate adipogenesis; by preventing its transcription, FOXO1 is preventing the onset of adipogenesis. During stimulation by insulin, FOXO1 is excluded from the nucleus and is subsequently unable to prevent transcription of PPARG and inhibit adipogenesis.[10] However, there is substantial evidence to suggest that there are other factors that mediate the interaction between FOXO1 and the PPARG promoter, and that inhibition of adipogenesis is not entirely dependent on FOXO1 preventing transcription of PPARG.[11] The failure to commit to adipogenesis is primarily due to active FOXO1 arresting the cell in G0/G1 through activation of yet unknown downstream targets, with a putative target beingSOD2.[12]

FOXO1 belongs to theforkhead family oftranscription factors that are characterized by a distinctfork head domain. The specific function of this gene has not yet been determined; however, it may play a role inmyogenic growth and differentiation.[13] FOXO1 is essential for the maintenance of human ESC pluripotency. This function is probably mediated through direct control by FOXO1 of OCT4 and SOX2 gene expression through occupation and activation of their respective promoters.[14] In hepatic cells this transcription factor seems to increase the expression ofPEPCK andglycogen-6-phosphatase (the same enzymes that are blocked via themetformin/AMPK/SHP pathway). Blocking this transcription factor offers an opportunity for novel therapies for diabetes mellitus.[15] In pancreatic alpha-cells FOXO1 is important in regulating prepro-glucagon expression.[16] In pancreatic beta cells FOXO1 mediatesglucagon-like peptide-1 effects on pancreatic beta-cell mass.[17]

Gluconeogenesis and glycogenolysis

[edit]
Depicts insulin-regulated nuclear exclusion of FOXO1 and its effect on transcription of glucose-6 phosphatase

When the level of blood glucose is high, the pancreas releasesinsulin into the bloodstream. Insulin then causes the activation ofPI3K, which subsequently phosphorylatesAkt. Akt then phosphorylates FOXO1, causing nuclear exclusion.[18][19] This phosphorylated FOXO1 is then ubiquitinated and degraded by the proteosome.[20] The phosphorylation of FOXO1 is irreversible; this prolongs insulin's inhibitory effect on glucose metabolism and hepatic glucose production. Transcription ofglucose 6-phosphatase subsequently decreases, which consequently decreases the rates ofgluconeogenesis andglycogenolysis.[21] FOXO1 also activates transcription ofphosphoenolpyruvate carboxykinase, which is required for gluconeogenesis.[22] The activity of FOXO1 is also regulated throughCBP induced acetylation[23] onLys-242, Lys-245, and Lys-262. These lysine residues are located within theDNA-binding domain;acetylation inhibits the ability of FOXO1 to interact with the glucose-6 phosphatase promoter by decreasing the stability of the FOXO1-DNA complex. Additionally, this acetylation increases the rate of phosphorylation on Ser-253 byAkt. Mutating Ser-253 to Ala-253 makes FOXO1 constitutively active.SIRT1 reverses this acetylation process; however, the exact mechanism by which SIRT1 deacetylates FOXO1 is still under investigation; presently, acetylation is thought to mitigate the transcriptional activity of FOXO1 and thereby provide an additional level of metabolic regulation that is independent of the insulin/PI3K pathway.[24]

Apoptosis

[edit]

FOXO1 may play an important role inapoptosis because it is phosphorylated and inhibited byAKT.[25] When FOXO1 is over expressed in humanLNCaP prostatecancer cells, it causesapoptosis.[25] Also, FOXO1 regulates TNF-related apoptosis-inducing ligand (TRAIL), which caused FOXO1-inducedapoptosis in the humanprostate cancer cell lineLAPC4 when FOXO1 adenovirus-mediated overexpression was used.[25] FOXO1 upregulates Fas ligand (FasL) transcriptionally resulting inapoptotic cell death.[25] Additionally, FOXO1 trans-activateBim protein, which a member of theBcl-2 family that promotesapoptosis and plays a role in the intrinsic mitochondrial apoptotic pathway.[25] Further, it was revealed thatDNA damage-induced cell death inp53-deficient andp53-proficient cells was reduced when human FOXO1 is silenced bysiRNA.[25] Intype 2 diabetes thebeta cells of the pancreas, which normally produceinsulin undergo apoptosis, which greatly reduces insulin production.Fatty acids in the beta cells activate FOXO1, resulting in apoptosis of the beta cells.[26] FOXO1 can also supprot survival of malignant B cells by inducing the activity of GAB1-PI3K axis and mTORC2-pAKT axis.[27][28]

Cell Cycle Regulation

[edit]

FOXO1 activation plays a role incell cycle progression regulation.[25] The transcription and half- life ofcyclin-dependent kinase inhibitorp27Kip1 rises when FOXO1 is active.[25] A study detects that FOXO1 regulates the nuclear localization of p27Kip1 in porcine granulosa cells and impactscell cycle progression.[25] Furthermore, FOXO1-mediated cell cycle arrest is linked withcyclin D1 andcyclin D2 suppression in mammals.[25] It was detected that human FOXO1 is linked with thecyclin D1 promoter using chromatin immunoprecipitation assays (ChIP assays).[25] H215R is a human FOXO1 mutant, which cannot bind to the canonical FRE to induce expression of p27Kip1, represscyclin D1 andcyclin D2 promoter activity and encouragescell cycle arrest at cyclin G1 (CCNG1).[25] As a result of that, activation of FOXO1 prevents thecell-division cycle at cyclin G1 (CCNG1) out of one of two ways stimulating or suppressing gene transcription.[25]

Mechanism of action

[edit]

In its un-phosphorylated state, FOXO1 is localized to the nucleus, where it binds to the insulin response sequence located in thepromoter forglucose 6-phosphatase and increases its rate of transcription. FOXO1, through increasing transcription of glucose-6-phosphatase, indirectly increases the rate of hepatic glucose production.[22] However, when FOXO1 is phosphorylated byAkt on Thr-24, Ser-256, and Ser-319, it is excluded from the nucleus, where it is thenubiquitinated and degraded. Thephosphorylation of FOXO1 by Akt subsequently decreases the hepatic glucose production through a decrease in transcription of glucose 6-phosphatase.

Regulation

[edit]

There are three processes, namelyacetylation,phosphorylation, andubiquitination that are responsible for regulation of the activity of forkhead box O1 (FOXO1).[29]

Phosphorylation

[edit]

Phosphorylation of the FOXO1 protein is a result of the activation of thePI3K /AKT pathway.[29] Serum and glucocorticoid-inducible kinaseSGK can also phosphorylate and inactivate FOXO1 transcription factor.[25] FOXO1 translocate from thenucleus tocytoplasm and inactivate throughphosphorylation at well-defined sites by AKT/SGK1 protein kinases.[29] FOXO1 transcription factor can phosphorylate directly byAKT/SGK1 on three sites T24, S256 and S319.[30] Additionally, FOXO1 loses its interactions withDNA when phosphorylated byAKT/SGK1 because S256, which is one of the three AKT/SGK sites, changes theDNA-binding domain charge from a positive charge to a negative charge.[29]

Insulin signaling substrates 1 and 2 of the insulin-signaling cascade also regulate FOXO1 through phosphorylation byAKT.[29]AKT, which is referred to as protein kinase B, phosphorylates FOXO1 and accumulates in thecytosol.[29]

Casein kinase 1, a growth factor-activated protein kinase, also phosphorylates and potentiates FOXO1 and translocates FOXO1 to thecytoplasm.[29]

Research

[edit]

Because FOXO1 provides a link between transcription and metabolic control by insulin, it is also a potential target for genetic control oftype 2 diabetes. In the insulin-resistant murine model, there is increased hepatic glucose production due to a loss in insulin sensitivity; the rates of hepatic gluconeogenesis and glycogenolysis are increased when compared to normal mice; this is presumably due to un-regulated FOXO1. When the same experiment was repeated with haploinsufficient FOXO1, insulin sensitivity was partially restored, and hepatic glucose production subsequently decreased.[31] Similarly, in mice fed with a high fat diet (HFD), there is increased insulin resistance in skeletal and liver cells. However, when haploinsufficient FOXO1 mice were treated with the same HFD, there was a notable decrease in insulin resistance in both skeletal and liver cells. This effect was significantly augmented by the simultaneous administration ofrosiglitazone, which is a commonly prescribed anti-diabetic drug.[32] These results create an opportunity for a novel gene therapy based approach to alleviating insulin desensitization in type 2 diabetes.

In diabetes (both type 1 and type 2), gluconeogenesis in the kidney contributes more to blood glucose than it does in normal subjects.[33] Enhancing suppression of FOXO1 by insulin can reduce gluconeogenesis in both the liver and kidney.[33]

In HFD-fed mice, the combination of FOXO1 and Notch-1 haploinsufficiency was more effective at restoring insulin sensitivity than FOXO1 haploinsufficiency alone.[34]

Insulin-producing cells could be generated through the inhibition of FOXO1 in intestinalorganoids generated from intestinal stem cells isolated from adult tissue.[35]

Clinical significance

[edit]

Interactions

[edit]

FOXO1 has been shown tointeract with:

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000150907Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000044167Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^abGalili N, Davis RJ, Fredericks WJ, Mukhopadhyay S, Rauscher FJ, Emanuel BS, Rovera G, Barr FG (November 1993). "Fusion of a fork head domain gene to PAX3 in the solid tumour alveolar rhabdomyosarcoma".Nature Genetics.5 (3):230–5.doi:10.1038/ng1193-230.PMID 8275086.S2CID 12374322.
  6. ^Nakae J, Kitamura T, Kitamura Y, Biggs WH, Arden KC, Accili D (January 2003)."The forkhead transcription factor Foxo1 regulates adipocyte differentiation".Developmental Cell.4 (1):119–29.doi:10.1016/S1534-5807(02)00401-X.PMID 12530968.
  7. ^Rena G, Guo S, Cichy SC, Unterman TG, Cohen P (June 1999)."Phosphorylation of the transcription factor forkhead family member FKHR by protein kinase B".The Journal of Biological Chemistry.274 (24):17179–83.doi:10.1074/jbc.274.24.17179.PMID 10358075.
  8. ^Guo S, Rena G, Cichy S, He X, Cohen P, Unterman T (June 1999)."Phosphorylation of serine 256 by protein kinase B disrupts transactivation by FKHR and mediates effects of insulin on insulin-like growth factor-binding protein-1 promoter activity through a conserved insulin response sequence".The Journal of Biological Chemistry.274 (24):17184–92.doi:10.1074/jbc.274.24.17184.PMID 10358076.
  9. ^Farmer SR (January 2003)."The forkhead transcription factor Foxo1: a possible link between obesity and insulin resistance".Molecular Cell.11 (1):6–8.doi:10.1016/S1097-2765(03)00003-0.PMID 12535515.
  10. ^Armoni M, Harel C, Karni S, Chen H, Bar-Yoseph F, Ver MR, Quon MJ, Karnieli E (July 2006)."FOXO1 represses peroxisome proliferator-activated receptor-gamma1 and -gamma2 gene promoters in primary adipocytes. A novel paradigm to increase insulin sensitivity".The Journal of Biological Chemistry.281 (29):19881–91.doi:10.1074/jbc.M600320200.PMID 16670091.
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  15. ^Nagashima T, Shigematsu N, Maruki R, Urano Y, Tanaka H, Shimaya A, Shimokawa T, Shibasaki M (November 2010). "Discovery of novel forkhead box O1 inhibitors for treating type 2 diabetes: improvement of fasting glycemia in diabetic db/db mice".Molecular Pharmacology.78 (5):961–70.doi:10.1124/mol.110.065714.PMID 20736318.S2CID 212576.
  16. ^McKinnon CM, Ravier MA, Rutter GA (December 2006)."FoxO1 is required for the regulation of preproglucagon gene expression by insulin in pancreatic alphaTC1-9 cells".The Journal of Biological Chemistry.281 (51):39358–69.doi:10.1074/jbc.M605022200.PMID 17062568.
  17. ^Buteau J, Spatz ML, Accili D (May 2006)."Transcription factor FoxO1 mediates glucagon-like peptide-1 effects on pancreatic beta-cell mass".Diabetes.55 (5):1190–6.doi:10.2337/db05-0825.PMID 16644672.
  18. ^Rena G, Woods YL, Prescott AR, Peggie M, Unterman TG, Williams MR, Cohen P (May 2002)."Two novel phosphorylation sites on FKHR that are critical for its nuclear exclusion".The EMBO Journal.21 (9):2263–71.doi:10.1093/emboj/21.9.2263.PMC 125977.PMID 11980723.
  19. ^Rena G, Prescott AR, Guo S, Cohen P, Unterman TG (March 2001)."Roles of the forkhead in rhabdomyosarcoma (FKHR) phosphorylation sites in regulating 14-3-3 binding, transactivation and nuclear targetting".The Biochemical Journal.354 (Pt 3):605–12.doi:10.1042/0264-6021:3540605.PMC 1221692.PMID 11237865.
  20. ^Matsuzaki H, Daitoku H, Hatta M, Tanaka K, Fukamizu A (September 2003)."Insulin-induced phosphorylation of FKHR (Foxo1) targets to proteasomal degradation".Proceedings of the National Academy of Sciences of the United States of America.100 (20):11285–90.Bibcode:2003PNAS..10011285M.doi:10.1073/pnas.1934283100.PMC 208749.PMID 13679577.
  21. ^Daitoku H, Fukamizu A (June 2007)."FOXO transcription factors in the regulatory networks of longevity".Journal of Biochemistry.141 (6):769–74.doi:10.1093/jb/mvm104.PMID 17569704.
  22. ^abNakae J, Kitamura T, Silver DL, Accili D (November 2001)."The forkhead transcription factor Foxo1 (Fkhr) confers insulin sensitivity onto glucose-6-phosphatase expression".The Journal of Clinical Investigation.108 (9):1359–67.doi:10.1172/JCI12876.PMC 209440.PMID 11696581.
  23. ^Matsuzaki H, Daitoku H, Hatta M, Aoyama H, Yoshimochi K, Fukamizu A (August 2005)."Acetylation of Foxo1 alters its DNA-binding ability and sensitivity to phosphorylation".Proceedings of the National Academy of Sciences of the United States of America.102 (32):11278–83.Bibcode:2005PNAS..10211278M.doi:10.1073/pnas.0502738102.PMC 1183558.PMID 16076959.
  24. ^Jing E, Gesta S, Kahn CR (August 2007)."SIRT2 regulates adipocyte differentiation through FoxO1 acetylation/deacetylation".Cell Metabolism.6 (2):105–14.doi:10.1016/j.cmet.2007.07.003.PMC 2083635.PMID 17681146.
  25. ^abcdefghijklmnLu H, Huang H (August 2011)."FOXO1: a potential target for human diseases".Current Drug Targets.12 (9):1235–44.doi:10.2174/138945011796150280.PMC 4591039.PMID 21443466.
  26. ^Sun T, Han X (2019). "Death versus dedifferentiation: The molecular bases of beta cell mass reduction in type 2 diabetes".Seminars in Cell and Developmental Biology.103:76–82.doi:10.1016/j.semcdb.2019.12.002.PMID 31831356.S2CID 209341381.
  27. ^abOndrisova L, Seda V, Hlavac K, Pavelkova P, Hoferkova E, Chiodin G, Kostalova L, Pavlasova GM, Filip D, Vecera J, Zeni PF, Oppelt J, Kahounova Z, Vichova R, Soucek K, Panovska A, Plevova K, Pospisilova S, Simkovic M, Vrbacky F, Lysak D, Fernandes SM, Davids MS, Maiques-Diaz A, Charalampopoulou S, Martin-Subero JI, Brown JR, Doubek M, Forconi F, Mayer J, Mraz M (December 2024)."FoxO1/Rictor axis induces a nongenetic adaptation to ibrutinib via Akt activation in chronic lymphocytic leukemia".Journal of Clinical Investigation.134 (23) e173770.doi:10.1172/JCI173770.PMC 11601945.PMID 39436708.
  28. ^Seda V, Vojackova E, Ondrisova L, et al. (2 September 2021)."FoxO1-GAB1 axis regulates homing capacity and tonic AKT activity in chronic lymphocytic leukemia".Blood.138 (9):758–772.doi:10.1182/blood.2020008101.PMC 8513669.PMID 33786575.
  29. ^abcdefghijklmnopqrsWang Y, Zhou Y, Graves DT (April 2014)."FOXO transcription factors: their clinical significance and regulation".BioMed Research International.2014 925350.doi:10.1155/2014/925350.PMC 4016844.PMID 24864265.
  30. ^Hedrick SM, Hess Michelini R, Doedens AL, Goldrath AW, Stone EL (September 2012)."FOXO transcription factors throughout T cell biology".Nature Reviews. Immunology.12 (9):649–61.doi:10.1038/nri3278.PMC 3875397.PMID 22918467.
  31. ^Nakae J, Biggs WH, Kitamura T, Cavenee WK, Wright CV, Arden KC, Accili D (October 2002). "Regulation of insulin action and pancreatic beta-cell function by mutated alleles of the gene encoding forkhead transcription factor Foxo1".Nature Genetics.32 (2):245–53.doi:10.1038/ng890.PMID 12219087.S2CID 12234973.
  32. ^Kim JJ, Li P, Huntley J, Chang JP, Arden KC, Olefsky JM (June 2009)."FoxO1 haploinsufficiency protects against high-fat diet-induced insulin resistance with enhanced peroxisome proliferator-activated receptor gamma activation in adipose tissue".Diabetes.58 (6):1275–82.doi:10.2337/db08-1001.PMC 2682681.PMID 19289458.
  33. ^abSwe MT, Pongchaidecha A, Chatsudthipong V, Chattipakorn N, Lungkaphin A (2019). "Molecular signaling mechanisms of renal gluconeogenesis in nondiabetic and diabetic conditions".Journal of Cellular Physiology.234 (6):8134–8151.doi:10.1002/jcp.27598.PMID 30370538.S2CID 53097552.
  34. ^Pajvani UB, Shawber CJ, Samuel VT, Birkenfeld AL, Shulman GI, Kitajewski J, Accili D (July 2011)."Inhibition of Notch signaling ameliorates insulin resistance in a FoxO1-dependent manner".Nature Medicine.17 (8):961–7.doi:10.1038/nm.2378.PMC 3387563.PMID 21804540.
  35. ^Bouchi R, Foo KS, Hua H, Tsuchiya K, Ohmura Y, Sandoval PR, Ratner LE, Egli D, Leibel RL, Accili D (June 2014)."FOXO1 inhibition yields functional insulin-producing cells in human gut organoid cultures".Nature Communications.5: 4242.Bibcode:2014NatCo...5.4242B.doi:10.1038/ncomms5242.PMC 4083475.PMID 24979718.
  36. ^Hlavac K, Pavelkova P, Ondrisova L, Mraz M (12 November 2024)."FoxO1 signaling in B cell malignancies and its therapeutic targeting".FEBS Letters.doi:10.1002/1873-3468.15057.PMID 39533662.
  37. ^Linardic CM (October 2008)."PAX3-FOXO1 fusion gene in rhabdomyosarcoma".Cancer Letters.270 (1):10–8.doi:10.1016/j.canlet.2008.03.035.PMC 2575376.PMID 18457914.
  38. ^abcXiao E, Graves DT (August 2015)."Impact of Diabetes on the Protective Role of FOXO1 in Wound Healing".Journal of Dental Research.94 (8):1025–6.doi:10.1177/0022034515586353.PMC 530387.PMID 25978971.
  39. ^Li P, Lee H, Guo S, Unterman TG, Jenster G, Bai W (January 2003)."AKT-independent protection of prostate cancer cells from apoptosis mediated through complex formation between the androgen receptor and FKHR".Molecular and Cellular Biology.23 (1):104–18.doi:10.1128/MCB.23.1.104-118.2003.PMC 140652.PMID 12482965.
  40. ^Schuur ER, Loktev AV, Sharma M, Sun Z, Roth RA, Weigel RJ (September 2001)."Ligand-dependent interaction of estrogen receptor-alpha with members of the forkhead transcription factor family".The Journal of Biological Chemistry.276 (36):33554–60.doi:10.1074/jbc.M105555200.PMID 11435445.
  41. ^Nasrin N, Ogg S, Cahill CM, Biggs W, Nui S, Dore J, Calvo D, Shi Y, Ruvkun G, Alexander-Bridges MC (September 2000)."DAF-16 recruits the CREB-binding protein coactivator complex to the insulin-like growth factor binding protein 1 promoter in HepG2 cells".Proceedings of the National Academy of Sciences of the United States of America.97 (19):10412–7.Bibcode:2000PNAS...9710412N.doi:10.1073/pnas.190326997.PMC 27038.PMID 10973497.
  42. ^Cao Y, Kamioka Y, Yokoi N, Kobayashi T, Hino O, Onodera M, Mochizuki N, Nakae J (December 2006)."Interaction of FoxO1 and TSC2 induces insulin resistance through activation of the mammalian target of rapamycin/p70 S6K pathway".The Journal of Biological Chemistry.281 (52):40242–51.doi:10.1074/jbc.M608116200.PMID 17077083.

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous

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