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FHL1

From Wikipedia, the free encyclopedia
Mammalian protein found in humans
FHL1
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1X63,2CUP,2CUR

Identifiers
AliasesFHL1, FHL-1, FHL1A, FHL1B, FLH1A, KYOT, SLIM, SLIM-1, SLIM1, SLIMMER, XMPMA, RBMX1A, RBMX1B, four and a half LIM domains 1, FCMSU
External IDsOMIM:300163;MGI:1298387;HomoloGene:31038;GeneCards:FHL1;OMA:FHL1 - orthologs
Gene location (Human)
X chromosome (human)
Chr.X chromosome (human)[1]
X chromosome (human)
Genomic location for FHL1
Genomic location for FHL1
BandXq26.3Start136,146,702bp[1]
End136,211,359bp[1]
Gene location (Mouse)
X chromosome (mouse)
Chr.X chromosome (mouse)[2]
X chromosome (mouse)
Genomic location for FHL1
Genomic location for FHL1
BandX|X A6Start55,777,147bp[2]
End55,838,706bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • Skeletal muscle tissue of rectus abdominis

  • biceps brachii

  • Skeletal muscle tissue of biceps brachii

  • body of tongue

  • vastus lateralis muscle

  • deltoid muscle

  • thoracic diaphragm

  • tibialis anterior muscle

  • urethra

  • triceps brachii muscle
Top expressed in
  • plantaris muscle

  • ankle

  • soleus muscle

  • tunica media of zone of aorta

  • temporal muscle

  • sternocleidomastoid muscle

  • left lung lobe

  • digastric muscle

  • tibialis anterior muscle

  • intercostal muscle
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

2273

14199

Ensembl

ENSG00000022267

ENSMUSG00000023092

UniProt

Q13642
Q5JXH9

P97447

RefSeq (mRNA)
NM_001159699
NM_001159700
NM_001159701
NM_001159702
NM_001159703

NM_001159704
NM_001167819
NM_001449
NM_001330659
NM_001369326
NM_001369327
NM_001369328
NM_001369329
NM_001369330
NM_001369331

NM_001077361
NM_001077362
NM_001287800
NM_010211

RefSeq (protein)
NP_001153171
NP_001153172
NP_001153173
NP_001153174
NP_001153175

NP_001153176
NP_001161291
NP_001317588
NP_001440
NP_001356255
NP_001356256
NP_001356257
NP_001356258
NP_001356259
NP_001356260

NP_001070829
NP_001070830
NP_001274729
NP_034341

Location (UCSC)Chr X: 136.15 – 136.21 MbChr X: 55.78 – 55.84 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Four and a half LIM domains protein 1 is aprotein that in humans is encoded by theFHL1gene.[5][6][7]

Structure

[edit]

LIM proteins, named for 'LIN11, ISL1, and MEC3,' are defined by the possession of a highly conserved doublezinc finger motif called theLIM domain.[7]

Role in muscle disorders

[edit]

FHL1 has been shown to be heavilyexpressed in skeletal and cardiac muscles.[8] In 2008 this was borne out by the discovery that defects in the FHL1 gene are responsible for a number ofMuscular dystrophy-like muscle disorders, ranging from severe, childhood onset diseases through to adult-onset disorders similar toLimb girdle muscular dystrophy. At least 15 disease-causing mutations in this gene have been discovered.[9] At present different research groups are using different terminology for these disorders, which include:

X-linked myopathy with postural muscle atrophy (XMPMA)
An adult-onset muscle disorder known to affect families in Austria and the UK.[10]
Reducing body myopathy (RBM)
A rare disorder causing progressive muscular weakness characterized by aggresome-like inclusions in the myofibrils. The effects of the disorder can be either severe, with onset of weakness at approximately five years, or adult onset, with weakness occurring in the late 20s, early 30s.[11]
Scapuloperoneal myopathy (SPM)
Another adult-onset muscle disorder, especially affecting the shoulder girdle and legs.[12]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000022267Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000023092Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Morgan MJ, Madgwick AJ (Aug 1996). "Slim defines a novel family of LIM-proteins expressed in skeletal muscle".Biochemical and Biophysical Research Communications.225 (2):632–8.doi:10.1006/bbrc.1996.1222.PMID 8753811.
  6. ^Lee SM, Tsui SK, Chan KK, Garcia-Barcelo M, Waye MM, Fung KP, Liew CC, Lee CY (Aug 1998). "Chromosomal mapping, tissue distribution and cDNA sequence of four-and-a-half LIM domain protein 1 (FHL1)".Gene.216 (1):163–70.doi:10.1016/S0378-1119(98)00302-3.PMID 9714789.
  7. ^ab"Entrez Gene: FHL1 four and a half LIM domains 1".
  8. ^Lee SM, Tsui SK, Chan KK, Garcia-Barcelo M, Waye MM, Fung KP, Liew CC, Lee CY (Aug 1998). "Chromosomal mapping, tissue distribution and cDNA sequence of four-and-a-half LIM domain protein 1 (FHL1)".Gene.216 (1):163–70.doi:10.1016/S0378-1119(98)00302-3.PMID 9714789.
  9. ^Šimčíková D, Heneberg P (December 2019)."Refinement of evolutionary medicine predictions based on clinical evidence for the manifestations of Mendelian diseases".Scientific Reports.9 (1): 18577.Bibcode:2019NatSR...918577S.doi:10.1038/s41598-019-54976-4.PMC 6901466.PMID 31819097.
  10. ^Windpassinger C, Schoser B, Straub V, Hochmeister S, Noor A, Lohberger B, Farra N, Petek E, Schwarzbraun T, Ofner L, Löscher WN, Wagner K, Lochmüller H, Vincent JB, Quasthoff S (Jan 2008)."An X-linked myopathy with postural muscle atrophy and generalized hypertrophy, termed XMPMA, is caused by mutations in FHL1".American Journal of Human Genetics.82 (1):88–99.doi:10.1016/j.ajhg.2007.09.004.PMC 2253986.PMID 18179888.
  11. ^Schessl J, Zou Y, McGrath MJ, Cowling BS, Maiti B, Chin SS, Sewry C, Battini R, Hu Y, Cottle DL, Rosenblatt M, Spruce L, Ganguly A, Kirschner J, Judkins AR, Golden JA, Goebel HH, Muntoni F, Flanigan KM, Mitchell CA, Bönnemann CG (Mar 2008)."Proteomic identification of FHL1 as the protein mutated in human reducing body myopathy".The Journal of Clinical Investigation.118 (3):904–12.doi:10.1172/JCI34450.PMC 2242623.PMID 18274675.
  12. ^Quinzii CM, Vu TH, Min KC, Tanji K, Barral S, Grewal RP, Kattah A, Camaño P, Otaegui D, Kunimatsu T, Blake DM, Wilhelmsen KC, Rowland LP, Hays AP, Bonilla E, Hirano M (Jan 2008)."X-linked dominant scapuloperoneal myopathy is due to a mutation in the gene encoding four-and-a-half-LIM protein 1".American Journal of Human Genetics.82 (1):208–13.doi:10.1016/j.ajhg.2007.09.013.PMC 2253963.PMID 18179901.

Further reading

[edit]

External links

[edit]
PDB gallery
  • 1x63: Solution structure of the second LIM domain of skeletal muscle LIM protein 1
    1x63: Solution structure of the second LIM domain of skeletal muscle LIM protein 1
  • 2cup: Solution structure of the Skeletal muscle LIM-protein 1
    2cup: Solution structure of the Skeletal muscle LIM-protein 1
  • 2cur: Solution structure of Skeletal muscle LIM-protein 1
    2cur: Solution structure of Skeletal muscle LIM-protein 1
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

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