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Ubiquitin D

From Wikipedia, the free encyclopedia
(Redirected fromFAT10)
Protein-coding gene in the species Homo sapiens

UBD
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

2MBE

Identifiers
AliasesUBD, FAT10, GABBR1, UBD-3, ubiquitin D
External IDsOMIM:606050;MGI:1344410;HomoloGene:4665;GeneCards:UBD;OMA:UBD - orthologs
Gene location (Human)
Chromosome 6 (human)
Chr.Chromosome 6 (human)[1]
Chromosome 6 (human)
Genomic location for UBD
Genomic location for UBD
Band6p22.1Start29,555,515bp[1]
End29,559,732bp[1]
Gene location (Mouse)
Chromosome 17 (mouse)
Chr.Chromosome 17 (mouse)[2]
Chromosome 17 (mouse)
Genomic location for UBD
Genomic location for UBD
Band17|17 B1Start37,504,783bp[2]
End37,506,986bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • appendix

  • lymph node

  • islet of Langerhans

  • rectum

  • gallbladder

  • human kidney

  • tonsil

  • olfactory zone of nasal mucosa

  • liver

  • spleen
Top expressed in
  • thymus

  • mesenteric lymph nodes

  • jejunum

  • mucous cell of stomach

  • lactiferous gland

  • subcutaneous adipose tissue

  • embryo

  • duodenum

  • spleen

  • intestinal villus
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

10537

24108

Ensembl
ENSG00000228913
ENSG00000231968
ENSG00000206468
ENSG00000206513
ENSG00000224654

ENSG00000213886
ENSG00000226898

ENSMUSG00000035186

UniProt

O15205

P63072

RefSeq (mRNA)

NM_006398

NM_023137

RefSeq (protein)

NP_006389

NP_075626

Location (UCSC)Chr 6: 29.56 – 29.56 MbChr 17: 37.5 – 37.51 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Ubiquitin D is aprotein that in humans is encoded by theUBDgene, also known as FAT10.[5][6][7]UBD is a member of the ubiquitin-like protein family and participates in protein turnover by targeting substrates for degradation by the proteasome.

Structure

[edit]

TheUBD gene is located within the human major histocompatibility complex (MHC) class I locus on chromosome 6 and was initially identified in reticuloendothelial tissues and mucosal-associated lymphoid systems.[5][6]The encoded protein has a molecular weight of approximately 18 kDa and contains N- and C-terminal regions that share 29% and 36% sequence identity with ubiquitin, respectively. Unlike other ubiquitin-like modifiers, UBD contains a free C-terminal diglycine motif that allows direct conjugation to target proteins.

Function

[edit]

UBD functions in a manner analogous to ubiquitin by covalently modifying proteins and directing them to proteasomal degradation. Among ubiquitin-like proteins, UBD is unique in that it can also directly guide noncovalently bound proteins to the proteasome. In addition to its role in protein degradation, UBD has been implicated in the regulation of mitosis, chromosome stability, apoptosis, and immune responses.

Clinical significance

[edit]

Dysregulation of UBD expression has been associated with altered apoptosis, abnormal cell division, and chromosomal instability, processes that are linked to neoplastic transformation. Increased UBD expression has been reported in several tumor types, including liver, cervical, ovarian, pancreatic, gastric, and small intestine adenocarcinomas, while little or no upregulation has been observed in thyroid, prostate, or kidney cancers.[8]In hepatocellular carcinoma, elevated UBD expression has been associated with increased levels of proliferating cell nuclear antigen, a marker of cell proliferation, and with enhanced tumor growth in experimental models. Overexpression of UBD has also been linked to the formation of Mallory–Denk bodies in chronic liver disease. In gastric cancer, increased UBD expression has been correlated with metastasis, tumor stage, and prognosis, and both UBD mRNA and protein levels have been reported as independent prognostic indicators. UBD expression can be induced by interferon-γ and tumor necrosis factor-α through an interferon sequence–responsive element in its promoter, suggesting a link between inflammatory signaling and UBD regulation.

Interactions

[edit]

UBD has been shown tointeract withNUB1[9] andMAD2L1.[10]

References

[edit]
  1. ^abcENSG00000231968, ENSG00000206468, ENSG00000206513, ENSG00000224654, ENSG00000213886, ENSG00000226898 GRCh38: Ensembl release 89: ENSG00000228913, ENSG00000231968, ENSG00000206468, ENSG00000206513, ENSG00000224654, ENSG00000213886, ENSG00000226898Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000035186Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^abBates EE, Ravel O, Dieu MC, Ho S, Guret C, Bridon JM, et al. (October 1997). "Identification and analysis of a novel member of the ubiquitin family expressed in dendritic cells and mature B cells".European Journal of Immunology.27 (10):2471–2477.doi:10.1002/eji.1830271002.PMID 9368598.S2CID 21652482.
  6. ^abFan W, Cai W, Parimoo S, Schwarz DC, Lennon GG, Weissman SM (Aug 1996). "Identification of seven new human MHC class I region genes around the HLA-F locus".Immunogenetics.44 (2):97–103.doi:10.1007/BF02660056.PMID 8662070.S2CID 21628804.
  7. ^"Entrez Gene: UBD ubiquitin D".
  8. ^Yan DW, Li DW, Yang YX, Xia J, Wang XL, Zhou CZ, et al. (September 2010)."Ubiquitin D is correlated with colon cancer progression and predicts recurrence for stage II-III disease after curative surgery".British Journal of Cancer.103 (7):961–969.doi:10.1038/sj.bjc.6605870.PMC 2965875.PMID 20808312.
  9. ^Hipp MS, Raasi S, Groettrup M, Schmidtke G (April 2004)."NEDD8 ultimate buster-1L interacts with the ubiquitin-like protein FAT10 and accelerates its degradation".The Journal of Biological Chemistry.279 (16):16503–16510.doi:10.1074/jbc.M310114200.PMID 14757770.
  10. ^Liu YC, Pan J, Zhang C, Fan W, Collinge M, Bender JR, et al. (April 1999)."A MHC-encoded ubiquitin-like protein (FAT10) binds noncovalently to the spindle assembly checkpoint protein MAD2".Proceedings of the National Academy of Sciences of the United States of America.96 (8):4313–4318.Bibcode:1999PNAS...96.4313L.doi:10.1073/pnas.96.8.4313.PMC 16329.PMID 10200259.

Further reading

[edit]
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