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EPHB3

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
EPHB3
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

3P1I,3ZFY

Identifiers
AliasesEPHB3, ETK2, HEK2, TYRO6, EPH receptor B3, EK2
External IDsOMIM:601839;MGI:104770;HomoloGene:20938;GeneCards:EPHB3;OMA:EPHB3 - orthologs
Gene location (Human)
Chromosome 3 (human)
Chr.Chromosome 3 (human)[1]
Chromosome 3 (human)
Genomic location for EPHB3
Genomic location for EPHB3
Band3q27.1Start184,561,785bp[1]
End184,582,408bp[1]
Gene location (Mouse)
Chromosome 16 (mouse)
Chr.Chromosome 16 (mouse)[2]
Chromosome 16 (mouse)
Genomic location for EPHB3
Genomic location for EPHB3
Band16|16 B1Start21,023,505bp[2]
End21,042,055bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • pancreatic ductal cell

  • skin of leg

  • skin of abdomen

  • gingival epithelium

  • parotid gland

  • mucosa of transverse colon

  • periodontal fiber

  • skin of arm

  • hair follicle

  • rectum
Top expressed in
  • saccule

  • otic placode

  • otic vesicle

  • lip

  • tongue

  • corneal stroma

  • molar

  • skin of abdomen

  • esophagus

  • calvaria
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

2049

13845

Ensembl

ENSG00000182580

ENSMUSG00000005958

UniProt

P54753

P54754

RefSeq (mRNA)

NM_004443

NM_010143

RefSeq (protein)

NP_004434

NP_034273

Location (UCSC)Chr 3: 184.56 – 184.58 MbChr 16: 21.02 – 21.04 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Ephrin type-B receptor 3 is aprotein that in humans is encoded by theEPHB3gene.[5][6]

Function

[edit]

Ephrin receptors and their ligands, the ephrins, mediate numerous developmental processes, particularly in the nervous system. Based on their structures and sequence relationships, ephrins are divided into the ephrin-A (EFNA) class, which are anchored to the membrane by a glycosylphosphatidylinositol linkage, and the ephrin-B (EFNB) class, which are transmembrane proteins. The Eph family of receptors are divided into 2 groups based on the similarity of their extracellular domain sequences and their affinities for binding ephrin-A and ephrin-B ligands. Ephrin receptors make up the largest subgroup of the receptor tyrosine kinase (RTK) family. The protein encoded by this gene is a receptor for ephrin-B family members.[6]

Interactions

[edit]

EPHB3 has been shown tointeract withMLLT4[7] andRAS p21 protein activator 1.[8]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000182580Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000005958Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Böhme B, Holtrich U, Wolf G, Luzius H, Grzeschik KH, Strebhardt K, Rübsamen-Waigmann H (Oct 1993). "PCR mediated detection of a new human receptor-tyrosine-kinase, HEK 2".Oncogene.8 (10):2857–62.PMID 8397371.
  6. ^ab"Entrez Gene: EPHB3 EPH receptor B3".
  7. ^Hock B, Böhme B, Karn T, Yamamoto T, Kaibuchi K, Holtrich U, Holland S, Pawson T, Rübsamen-Waigmann H, Strebhardt K (Aug 1998)."PDZ-domain-mediated interaction of the Eph-related receptor tyrosine kinase EphB3 and the ras-binding protein AF6 depends on the kinase activity of the receptor".Proc. Natl. Acad. Sci. U.S.A.95 (17):9779–84.Bibcode:1998PNAS...95.9779H.doi:10.1073/pnas.95.17.9779.PMC 21413.PMID 9707552.
  8. ^Hock B, Böhme B, Karn T, Feller S, Rübsamen-Waigmann H, Strebhardt K (Jul 1998)."Tyrosine-614, the major autophosphorylation site of the receptor tyrosine kinase HEK2, functions as multi-docking site for SH2-domain mediated interactions".Oncogene.17 (2):255–60.doi:10.1038/sj.onc.1201907.PMID 9674711.

Further reading

[edit]

External links

[edit]
  • Overview of all the structural information available in thePDB forUniProt:P54753 (Ephrin type-B receptor 3) at thePDBe-KB.
Growth factor receptors
EGF receptor family
Insulin receptor family
PDGF receptor family
FGF receptor family
VEGF receptors family
HGF receptor family
Trk receptor family
EPH receptor family
LTK receptor family
TIE receptor family
ROR receptor family
DDR receptor family
PTK7 receptor family
RYK receptor family
MuSK receptor family
ROS receptor family
AATYK receptor family
AXL receptor family
RET receptor family
uncategorised
ABL family
ACK family
CSK family
FAK family
FES family
FRK family
JAK family
SRC-A family
SRC-B family
TEC family
SYK family
Activity
Regulation
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Angiopoietin
CNTF
EGF (ErbB)
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(ErbB1/HER1)
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FGF
FGFR1
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FGFR4
Unsorted
HGF (c-Met)
IGF
IGF-1
IGF-2
Others
LNGF (p75NTR)
PDGF
RET (GFL)
GFRα1
GFRα2
GFRα3
GFRα4
Unsorted
SCF (c-Kit)
TGFβ
Trk
TrkA
TrkB
TrkC
VEGF
Others
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