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EPAS1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

EPAS1
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1P97,2A24,3F1N,3F1O,3F1P,3H7W,3H82,4GHI,4GS9,4PKY,4XT2

Identifiers
AliasesEPAS1, ECYT4, HIF2A, HLF, MOP2, PASD2, bHLHe73, endothelial PAS domain protein 1, Hypoxia-inducible factor-2alpha
External IDsOMIM:603349;MGI:109169;HomoloGene:1095;GeneCards:EPAS1;OMA:EPAS1 - orthologs
Gene location (Human)
Chromosome 2 (human)
Chr.Chromosome 2 (human)[1]
Chromosome 2 (human)
Genomic location for EPAS1
Genomic location for EPAS1
Band2p21Start46,293,667bp[1]
End46,386,697bp[1]
Gene location (Mouse)
Chromosome 17 (mouse)
Chr.Chromosome 17 (mouse)[2]
Chromosome 17 (mouse)
Genomic location for EPAS1
Genomic location for EPAS1
Band17|17 E4Start87,061,128bp[2]
End87,140,838bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right lung

  • lower lobe of lung

  • nasal epithelium

  • placenta

  • visceral pleura

  • upper lobe of lung

  • upper lobe of left lung

  • saphenous vein

  • superficial temporal artery

  • pericardium
Top expressed in
  • right lung lobe

  • gastrula

  • Vasculature of brain

  • retinal pigment epithelium

  • carotid body

  • decidua

  • left lung lobe

  • ciliary body

  • Epithelium of choroid plexus

  • digastric muscle
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

2034

13819

Ensembl

ENSG00000116016

ENSMUSG00000024140

UniProt

Q99814

P97481

RefSeq (mRNA)

NM_001430

NM_010137

RefSeq (protein)

NP_001421

NP_034267

Location (UCSC)Chr 2: 46.29 – 46.39 MbChr 17: 87.06 – 87.14 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Endothelial PAS domain-containing protein 1 (EPAS1, also known as hypoxia-inducible factor-2alpha (HIF-2α)) is aprotein that is encoded by theEPAS1gene in mammals. It is a type ofhypoxia-inducible factor, a group oftranscription factors involved in the physiological response to oxygen concentration.[5][6][7][8] The gene is active underhypoxic conditions. It is also important in the development of the heart, and for maintaining thecatecholamine balance required for protection of the heart. Mutation often leads toneuroendocrine tumors.

However, several characterizedalleles ofEPAS1 contribute tohigh-altitude adaptation in humans.[9][10] One such allele, which has been inherited fromDenisovanarchaic hominins, is known to confer increased athletic performance in some people, and has therefore been referred to as the "super athlete gene".[11]

Function

[edit]

The EPAS1 gene encodes one subunit of atranscription factor involved in the induction of genes regulated by oxygen, and which is induced as oxygen concentration falls (hypoxia). The protein contains abasic helix-loop-helix protein dimerization domain as well as a domain found insignal transduction proteins which respond to oxygen levels. EPAS1 is involved in the development of theembryonic heart and is expressed inendothelial cells that line the walls ofblood vessels in theumbilical cord.

EPAS1 is also essential for the maintenance ofcatecholamine homeostasis and protection againstheart failure during early embryonic development.[8]Catecholamines regulated by EPAS1 includeepinephrine andnorepinephrine. It is critical that the production of catecholamines remain inhomeostatic conditions so that both the delicatefetal heart and the adult heart do not overexert themselves and induce heart failure. Catecholamine production in the embryo is related to control ofcardiac output by increasing thefetal heart rate.[12]

Alleles

[edit]

A high percentage ofTibetans carry an allele of EPAS1 that improves oxygen transport. The beneficial allele is also found in the extinctDenisovan genome, suggesting that it arose in them and entered the modern human population throughhybridization.[13]

TheHimalayan wolf[14] and theTibetan mastiff[15] have inherited an altitude-adaptive allele of the gene from interbreeding with aghost population of an unknown wolf-like canid. The EPAS1 allele is known to confer an adaptive advantage to animals living at high-altitudes.[14]

Clinical significance

[edit]

Mutations in the EPAS1 gene are related to early-onset neuroendocrine tumors such asparagangliomas,somatostatinomas and/orpheochromocytomas. The mutations are commonlysomaticmissense mutations that locate in the primary hydroxylation site of HIF-2α, which disrupt the protein hydroxylation/degradation mechanism, and leads to protein stabilization and pseudohypoxic signaling. In addition, these neuroendocrine tumors releaseerythropoietin (EPO) into circulating blood, and lead topolycythemia.[16][17]

Mutations in this gene are associated witherythrocytosis familial type 4,[8]pulmonary hypertension, andchronic mountain sickness.[18] There is also evidence that certain variants of this gene provide protection for people living at high altitude such as in Tibet.[9][10][19] The effect is most profound among the Tibetans living in the Himalayas at an altitude of about 4,000 metres above sea level, the environment of which is intolerable to other human populations due to 40% less atmospheric oxygen.

A study byUC Berkeley identified more than 30 genetic factors that make Tibetans' bodies well-suited for high-altitudes, including EPAS1.[20] Tibetans suffer no health problems associated withaltitude sickness, but instead produce low levels of blood pigment (haemoglobin) sufficient for less oxygen, more elaborate blood vessels,[21] have lower infant mortality,[22] and are heavier at birth.[23]

EPAS1 is useful in high altitudes as a short term adaptive response. However, EPAS1 can also cause excessive production of red blood cells leading to chronic mountain sickness that can lead to death and inhibited reproductive abilities. Some mutations that increase its expression are associated with increased hypertension and stroke at low altitude, with symptoms similar to mountain sickness. Populations living permanently at high altitudes experience selection on EPAS1 for mutations which reduce the negative fitness consequences of excessive red blood cell production.[19]

Belzutifan is a HIF-2α inhibitor, a medication approved in United States, United Kingdom, and European Union.

Interactions

[edit]

EPAS1 has been shown tointeract witharyl hydrocarbon receptor nuclear translocator[24] andARNTL.[25]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000116016Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000024140Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Tian H, McKnight SL, Russell DW (January 1997)."Endothelial PAS domain protein 1 (EPAS1), a transcription factor selectively expressed in endothelial cells".Genes & Development.11 (1):72–82.doi:10.1101/gad.11.1.72.PMID 9000051.
  6. ^Hogenesch JB, Chan WK, Jackiw VH, Brown RC, Gu YZ, Pray-Grant M, et al. (March 1997)."Characterization of a subset of the basic-helix-loop-helix-PAS superfamily that interacts with components of the dioxin signaling pathway".The Journal of Biological Chemistry.272 (13):8581–93.doi:10.1074/jbc.272.13.8581.PMID 9079689.
  7. ^Percy MJ, Beer PA, Campbell G, Dekker AW, Green AR, Oscier D, et al. (June 2008)."Novel exon 12 mutations in the HIF2A gene associated with erythrocytosis".Blood.111 (11):5400–2.doi:10.1182/blood-2008-02-137703.PMC 2396730.PMID 18378852.
  8. ^abc"Entrez Gene: EPAS1 endothelial PAS domain protein 1".
  9. ^abYi X, Liang Y, Huerta-Sanchez E, Jin X, Cuo ZX, Pool JE, et al. (July 2010)."Sequencing of 50 human exomes reveals adaptation to high altitude".Science.329 (5987):75–8.Bibcode:2010Sci...329...75Y.doi:10.1126/science.1190371.PMC 3711608.PMID 20595611.
  10. ^abHanaoka M, Droma Y, Basnyat B, Ito M, Kobayashi N, Katsuyama Y, et al. (2012)."Genetic variants in EPAS1 contribute to adaptation to high-altitude hypoxia in Sherpas".PLOS ONE.7 (12) e50566.Bibcode:2012PLoSO...750566H.doi:10.1371/journal.pone.0050566.PMC 3515610.PMID 23227185.
  11. ^Algar J (1 July 2014)."Tibetan 'super athlete' gene courtesy of an extinct human species".Tech Times. Retrieved22 July 2014.
  12. ^Tian H, Hammer RE, Matsumoto AM, Russell DW, McKnight SL (November 1998)."The hypoxia-responsive transcription factor EPAS1 is essential for catecholamine homeostasis and protection against heart failure during embryonic development".Genes & Development.12 (21):3320–4.doi:10.1101/gad.12.21.3320.PMC 317225.PMID 9808618.
  13. ^Jeong C, Alkorta-Aranburu G, Basnyat B, Neupane M, Witonsky DB, Pritchard JK, et al. (2014-02-10)."Admixture facilitates genetic adaptations to high altitude in Tibet".Nature Communications.5 3281.Bibcode:2014NatCo...5.3281J.doi:10.1038/ncomms4281.PMC 4643256.PMID 24513612.
  14. ^abWang MS, Wang S, Li Y, Jhala Y, Thakur M, Otecko NO, et al. (September 2020)."Ancient Hybridization with an Unknown Population Facilitated High-Altitude Adaptation of Canids".Molecular Biology and Evolution.37 (9):2616–2629.doi:10.1093/molbev/msaa113.PMID 32384152.
  15. ^Miao B, Wang Z, Li Y (December 2016)."Genomic Analysis Reveals Hypoxia Adaptation in the Tibetan Mastiff by Introgression of the Grey Wolf from the Tibetan Plateau".Molecular Biology and Evolution.34 (3):734–743.doi:10.1093/molbev/msw274.PMID 27927792.S2CID 47507546.
  16. ^Zhuang Z, Yang C, Lorenzo F, Merino M, Fojo T, Kebebew E, et al. (September 2012)."Somatic HIF2A gain-of-function mutations in paraganglioma with polycythemia".The New England Journal of Medicine.367 (10):922–30.doi:10.1056/NEJMoa1205119.PMC 3432945.PMID 22931260.
  17. ^Yang C, Sun MG, Matro J, Huynh TT, Rahimpour S, Prchal JT, et al. (March 2013)."Novel HIF2A mutations disrupt oxygen sensing, leading to polycythemia, paragangliomas, and somatostatinomas".Blood.121 (13):2563–6.doi:10.1182/blood-2012-10-460972.PMC 3612863.PMID 23361906.
  18. ^Gale DP, Harten SK, Reid CD, Tuddenham EG, Maxwell PH (August 2008)."Autosomal dominant erythrocytosis and pulmonary arterial hypertension associated with an activating HIF2 alpha mutation".Blood.112 (3):919–21.doi:10.1182/blood-2008-04-153718.PMID 18650473.
  19. ^abBeall CM, Cavalleri GL, Deng L, Elston RC, Gao Y, Knight J, et al. (June 2010)."Natural selection on EPAS1 (HIF2alpha) associated with low hemoglobin concentration in Tibetan highlanders".Proceedings of the National Academy of Sciences of the United States of America.107 (25):11459–64.Bibcode:2010PNAS..10711459B.doi:10.1073/pnas.1002443107.PMC 2895075.PMID 20534544.
  20. ^Schaffer G (24 April 2014)."Five myths about Mount Everest".Washington Post. Retrieved18 May 2019. – cites Sanders, Robert (July 1, 2010)Tibetans adapted to high altitude in less than 3,000 years, Mind & body, Research, Science & environment,Berkeley News
  21. ^Beall CM (February 2006). "Andean, Tibetan, and Ethiopian patterns of adaptation to high-altitude hypoxia".Integrative and Comparative Biology.46 (1):18–24.CiteSeerX 10.1.1.595.7464.doi:10.1093/icb/icj004.PMID 21672719.
  22. ^Beall CM, Song K, Elston RC, Goldstein MC (September 2004)."Higher offspring survival among Tibetan women with high oxygen saturation genotypes residing at 4,000 m".Proceedings of the National Academy of Sciences of the United States of America.101 (39):14300–4.doi:10.1073/pnas.0405949101.PMC 521103.PMID 15353580.
  23. ^Beall CM (May 2007)."Two routes to functional adaptation: Tibetan and Andean high-altitude natives".Proceedings of the National Academy of Sciences of the United States of America.104 (Suppl 1):8655–60.doi:10.1073/pnas.0701985104.PMC 1876443.PMID 17494744.
  24. ^Hogenesch JB, Chan WK, Jackiw VH, Brown RC, Gu YZ, Pray-Grant M, et al. (March 1997)."Characterization of a subset of the basic-helix-loop-helix-PAS superfamily that interacts with components of the dioxin signaling pathway".The Journal of Biological Chemistry.272 (13):8581–93.doi:10.1074/jbc.272.13.8581.PMID 9079689.
  25. ^Hogenesch JB, Gu YZ, Jain S, Bradfield CA (May 1998)."The basic-helix-loop-helix-PAS orphan MOP3 forms transcriptionally active complexes with circadian and hypoxia factors".Proceedings of the National Academy of Sciences of the United States of America.95 (10):5474–9.Bibcode:1998PNAS...95.5474H.doi:10.1073/pnas.95.10.5474.PMC 20401.PMID 9576906.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

PDB gallery
  • 1p97: NMR structure of the C-terminal PAS domain of HIF2a
    1p97: NMR structure of the C-terminal PAS domain of HIF2a
  • 2a24: HADDOCK Structure of HIF-2a/ARNT PAS-B Heterodimer
    2a24: HADDOCK Structure of HIF-2a/ARNT PAS-B Heterodimer
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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