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Ap4A

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(Redirected fromDiadenosine tetraphosphate)
Ap4A
Names
IUPAC name
O1,O7-Di(5′-deoxyadenosin-5′-yl) tetrahydrogen tetraphosphate
Systematic IUPAC name
O1,O7-Bis{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl} tetrahydrogen tetraphosphate
Other names
Diadenosine tetraphosphate; 5',5'''-Diadenosine tetraphosphate; AppppA
Identifiers
3D model (JSmol)
ChEBI
ChEMBL
ChemSpider
KEGG
  • InChI=1S/C20H28N10O19P4/c21-15-9-17(25-3-23-15)29(5-27-9)19-13(33)11(31)7(45-19)1-43-50(35,36)47-52(39,40)49-53(41,42)48-51(37,38)44-2-8-12(32)14(34)20(46-8)30-6-28-10-16(22)24-4-26-18(10)30/h3-8,11-14,19-20,31-34H,1-2H2,(H,35,36)(H,37,38)(H,39,40)(H,41,42)(H2,21,23,25)(H2,22,24,26)/t7-,8-,11-,12-,13-,14-,19-,20-/m1/s1
    Key: YOAHKNVSNCMZGQ-XPWFQUROSA-N
  • C1=NC2=C(C(=N1)N)N=CN2[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5C=NC6=C5N=CN=C6N)O)O)O)O
Properties
C20H28N10O19P4
Molar mass836.390 g·mol−1
Except where otherwise noted, data are given for materials in theirstandard state (at 25 °C [77 °F], 100 kPa).
Chemical compound

Diadenosine tetraphosphate orAp4A is a putativealarmone, ubiquitous in nature being common to everything frombacteria tohumans. It is made up of two adenosines joined together by a 5′-5′ linked chain of four phosphates. Adenosine polyphosphates are capable of inducing multiplephysiological effects.[1]

Function

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In Eukaryotes

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Ap4A can be created by a non-canonical activity of the Lysyl-tRNA synthetase (LysRS). This function of LysRS is activated by the phosphorylation of LysRS on serine 207, its subsequent dissociation from the multi-synthetase complex (MSC).[2] The molecule's role as a second messenger has recently been discovered in TheLysRS-Ap4A-MITF signaling pathway.[3] Ap4A binds to the MITF-HINT1 inhibitory complex, specifically to the moleculehistidine triad nucleotide–binding protein 1(HINT1), releasing the Microphthalmia-associated transcription factor (MITF) and causing an increase in the transcription of its target genes.[4] Ap4A also positively regulates the activity of the transcription factorUSF2 through a similar molecular mechanism to that of MITF.[5]

It has also been shown, that Ap4A plays a role in the functionality ofdendritic cells (DCs). An increase in the intracellular amount Improves their motility and antigen presenting ability through alterations insmall GTPases present in the cells. This was discovered by creating mice deficient in the enzymeNUDT2, which serves as an Ap4Ahydrolase and thus controls the levels of Ap4A in the cell.[6] Ap4A, however, has also been shown to causeapoptosis in several cell lines through an unknown mechanism, the degradation of Ap4A was necessary for the process as hydrolysis-resistant analogues of the molecule showed no apoptotic activity.[7]

In Prokaryotes

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In E. Coli, Ap4A has been shown to function as an alarmone, as the intracellular concentration of the molecule increases upon heat stress.[8] Ap4A can also be incorporated into RNA as a5' Cap along with other dinucleoside polyphosphates. It serves as a substrate for theRNA polymerase and the intracellular levels of these capped RNAs increase upon stress, suggesting that the cap adds a level of stability to theRNA.[9]

Myxococcus xanthus is a type ofGram-negative bacteria, andM. xanthus lysyl-tRNA synthetase (LysS) is an enzyme from the bacteria that synthesizes diadenosine tetraphosphates (Ap4A) whenadenosine triphosphate (ATP) is present. Diadenosine pentaphosphate (Ap5A) is synthesized from Ap4A with ATP.[10]

References

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  1. ^Luo, Jiankai; Jankowski, Vera; GüNgär, Nihayrt; Neumann, Joachim; Schmitz, Wilhelm; Zidek, Walter; SchlüTer, Hartmut; Jankowski, Joachim (2004). "Endogenous diadenosine tetraphosphate, diadenosine pentaphosphate, and diadenosine hexaphosphate in human myocardial tissue".Hypertension.43 (5):1055–9.doi:10.1161/01.hyp.0000126110.46402.dd.PMID 15066958.S2CID 1003539.
  2. ^Ofir-Birin, Yifat; Fang, Pengfei; Bennett, Steven P.; Zhang, Hui-Min; Wang, Jing; Rachmin, Inbal; Shapiro, Ryan; Song, Jing; Dagan, Arie; Pozo, Jorge; Kim, Sunghoon; Marshall, Alan G.; Schimmel, Paul; Yang, Xiang-Lei; Nechushtan, Hovav; Razin, Ehud; Guo, Min (2013-01-10)."Structural Switch of Lysyl-tRNA Synthetase between Translation and Transcription".Molecular Cell.49 (1):30–42.doi:10.1016/j.molcel.2012.10.010.ISSN 1097-2765.PMC 3766370.PMID 23159739.
  3. ^*Lee, Yu-Nee; Nechushtan, Hovav; Figov, Navah; Razin, Ehud (April 2004). "The function of lysyl-tRNA synthetase and Ap4A as signaling regulators of MITF activity in FcepsilonRI-activated mast cells".Immunity.20 (2):145–51.doi:10.1016/S1074-7613(04)00020-2.PMID 14975237.S2CID 36723485.
  4. ^Yu, Jing; Liu, Zaizhou; Liang, Yuanyuan; Luo, Feng; Zhang, Jie; Tian, Cuiping; Motzik, Alex; Zheng, Mengmeng; Kang, Jingwu; Zhong, Guisheng; Liu, Cong (2019-10-11)."Second messenger Ap4A polymerizes target protein HINT1 to transduce signals in FcεRI-activated mast cells".Nature Communications.10 (1): 4664.doi:10.1038/s41467-019-12710-8.ISSN 2041-1723.PMC 6789022.PMID 31604935.
  5. ^Lee, Yu-Nee; Razin, Ehud (2005-10-15)."Nonconventional Involvement of LysRS in the Molecular Mechanism of USF2 Transcriptional Activity in FcεRI-Activated Mast Cells".Molecular and Cellular Biology.25 (20):8904–8912.doi:10.1128/MCB.25.20.8904-8912.2005.ISSN 0270-7306.PMC 1265770.PMID 16199869.
  6. ^Shu, Shin La; Paruchuru, Lakshmi Bhargavi; Tay, Neil Quanwei; Chua, Yen Leong; Foo, Adeline Shen Yun; Yang, Chris Maolin; Liong, Ka Hang; Koh, Esther Geok Liang; Lee, Angeline; Nechushtan, Hovav; Razin, Ehud; Kemeny, David Michael (2019-06-28)."Ap4A Regulates Directional Mobility and Antigen Presentation in Dendritic Cells".iScience.16:524–534.doi:10.1016/j.isci.2019.05.045.ISSN 2589-0042.PMC 6595237.PMID 31254530.
  7. ^Vartanian, Amalia; Alexandrov, Ivan; Prudowski, Igor; McLennan, Alexander; Kisselev, Lev (1999). "Ap4A induces apoptosis in human cultured cells".FEBS Letters.456 (1):175–180.Bibcode:1999FEBSL.456..175V.doi:10.1016/S0014-5793(99)00956-4.ISSN 1873-3468.PMID 10452553.S2CID 24954275.
  8. ^Despotović, Dragana; Brandis, Alexander; Savidor, Alon; Levin, Yishai; Fumagalli, Laura; Tawfik, Dan S. (2017)."Diadenosine tetraphosphate (Ap4A) – an E. coli alarmone or a damage metabolite?".The FEBS Journal.284 (14):2194–2215.doi:10.1111/febs.14113.hdl:2434/503672.ISSN 1742-4658.PMID 28516732.
  9. ^Hudeček, Oldřich; Benoni, Roberto; Reyes-Gutierrez, Paul E.; Culka, Martin; Šanderová, Hana; Hubálek, Martin; Rulíšek, Lubomír; Cvačka, Josef; Krásný, Libor; Cahová, Hana (2020-02-26)."Dinucleoside polyphosphates act as 5′-RNA caps in bacteria".Nature Communications.11 (1): 1052.Bibcode:2020NatCo..11.1052H.doi:10.1038/s41467-020-14896-8.ISSN 2041-1723.PMC 7044304.PMID 32103016.
  10. ^Kimura, Yoshio; Tanaka, Chihiro; Oka, Manami (July 2018). "Identification of Major Enzymes Involved in the Synthesis of Diadenosine Tetraphosphate and/or Adenosine Tetraphosphate in Myxococcus xanthus".Current Microbiology.75 (7):811–817.doi:10.1007/s00284-018-1452-x.ISSN 1432-0991.PMID 29468302.S2CID 3402370.
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