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David Reich (geneticist)

From Wikipedia, the free encyclopedia
American geneticist (born 1974)
This article is about the geneticist. For the anesthesiologist/hospital president, seeDavid L. Reich.
David Reich
Born
David Emil Reich

(1974-07-14)July 14, 1974 (age 51)
Alma materHarvard University (BA)
St Catherine's College, Oxford (DPhil)
Awards
Scientific career
FieldsGene mapping
ThesisGenetic analysis of human evolutionary history with implications for gene mapping (1999)
Doctoral advisorDavid Goldstein[3]

David Emil Reich[4] (born July 14, 1974) is an Americangeneticist known for theindustrialization of research into the population genetics of ancient humans,[5] including their migrations and the mixing of populations, discovered by analysis ofgenome-wide patterns of mutations. He is professor in the department ofgenetics at theHarvard Medical School, and an associate of theBroad Institute. Reich was highlighted as one ofNature's 10 for his contributions to science in 2015.[5] He received theDan David Prize in 2017, theNAS Award in Molecular Biology, theWiley Prize, and theDarwin–Wallace Medal in 2019. In 2021 he was awarded theMassry Prize.[6] He is the director of theDavid Reich Lab.

Early life and education

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Reich grew up as part of aJewish family inWashington, D.C. His parents are novelistTova Reich (sister of RabbiAvi Weiss) andWalter Reich, a professor atGeorge Washington University, who served as the first director of theUnited States Holocaust Memorial Museum.[7][8] During high school, Reich attended theResearch Science Institute at MIT.[9] Reich started out as a sociology major as an undergraduate atHarvard College, but later turned his attention to physics and medicine and earned a B.A. in the subject. After graduation, he attended theUniversity of Oxford, originally with the intent of preparing for medical school.[7] He was awarded a D.Phil. inzoology fromSt Catherine's College, Oxford, in 1999 for research supervised byDavid Goldstein.[10] His thesis was titled "Genetic analysis of human evolutionary history with implications for gene mapping".[3]

Academic career

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He joinedHarvard Medical School in 2003.[7] Reich is currently ageneticist and professor in the department ofgenetics atHarvard Medical School, and an associate of theBroad Institute, whose research studies compare the modernhuman genome with those ofchimpanzees,Neanderthals, andDenisovans.[citation needed]

Reich's genetics research focuses primarily on finding complex genetic patterns that cause susceptibility to commondiseases among large populations, rather than looking for specific genetic markers associated with relatively rare illnesses.[citation needed]

Genetic research

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Split of chimpanzees and humans (2006)

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Main article:Human-chimp MRCA

Reich's research team atHarvard University has produced evidence that, over a span of at least four million years, various parts of thehuman genome diverged gradually from those of chimpanzees.[11] The split between the human and chimpanzee lineages may have occurred millions of years later than fossilized bones suggest, and the break may not have been as clean as previously thought. The genetic evidence developed by Reich's team suggests that after the two species initially separated, they may have continued interbreeding for several million years.A final genetic split transpired between 6.3 million and 5.4 million years ago.[12]

Indian population (2009)

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Main article:Genetics and archaeogenetics of South Asia
See also:ANI and ASI andDravidian migrations

Reich's 2009 paperReconstructing Indian population history[13] was a landmark study in the research on India's genepool and the origins of its population. Reich et al. (2009), in a collaborative effort between theHarvard Medical School and the IndianCentre for Cellular and Molecular Biology (CCMB), examined the entire genomes worth 560,000single-nucleotide polymorphisms (SNPs), as compared to 420 SNPs in prior work. They also cross-compared them with the genomes of other regions available in the global genome database.[14] Through this study, they were able to discern two genetic groups in the majority of populations in India, which they called "Ancestral North Indians" (ANI) and "Ancestral South Indians" (ASI).[note 1] They found that the ANI genes are close to those of Middle Easterners, Central Asians and Europeans whereas the ASI genes are dissimilar to all other known populations outside India.[note 2][note 3] These two distinct groups, which had split ca. 50,000 years ago, formed the basis for the present population of India.[15]

A follow-up study by Moorjani et al. (2013) revealed that the two groups mixed between 1,900 and 4,200 years ago (2200 BCE–100 CE), after which a shift toendogamy took place and admixture became rare.[note 4] Speaking to Fountain Ink, David Reich stated, "Prior to 4,200 years ago, there were unmixed groups in India. Sometime between 1,900 to 4,200 years ago, profound, pervasive convulsive mixture occurred, affecting every Indo-European and Dravidian group in India without exception." Reich pointed out that their work does not show that a substantial migration occurred during this time.[16]

Metspalu et al. (2011), representing a collaboration between the Estonian Biocenter and CCMB, confirmed that the Indian populations are characterized by two major ancestry components. One of them is spread at comparable frequency and haplotype diversity in populations of South and West Asia and the Caucasus. The second component is more restricted to South Asia and accounts for more than 50% of the ancestry in Indian populations. Haplotype diversity associated with these South Asian ancestry components is significantly higher than that of the components dominating the West Eurasian ancestry palette.[17]

Human genetic map (2011)

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Reich was a co-leader, along with statistician Simon Myers, of a team of genetics researchers from Harvard University and theUniversity of Oxford that made the most complete human genetic map then known in July 2011.[18]

Interbreeding of Neanderthals and humans (2010–2012)

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Main article:Neanderthal admixture

Reich's research team significantly contributed to the discovery thatNeanderthals andDenisovans interbred withmodern human populations as they dispersed from Africa into Eurasia 70,000–30,000 years ago.[19]

Genetic markers for prostate cancer

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Reich's lab received media attention following its discovery of a genetic marker which is linked to an increased likelihood of developingprostate cancer.[20] Reich has also argued that the higher incidence of prostate cancer among African Americans, compared to European Americans, appears to be largely genetic in origin.[21]

Indo-European origins

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Reich disputed the idea thatIndo-European languages originated inAnatolia due to a lack of genetic similarity of Anatolian samples with the steppeYamnaya culture, instead suggesting the languages may have originated south of theCaucasus, in present-dayIran orArmenia and split into two branches with one going to thesteppe and one to Anatolia[22] which is close to theArmenian hypothesis.

Eurasian back-migrations

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Reich in 2018 demonstrated, based on genetic evidence, thatWest Asian geneflow into modern populations inEthiopia andSomalia, particularly speakers ofAfroasiatic languages, could support a diffusion of these languages from the Middle East.[23]

Software tools

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Reich has developedADMIXTOOLS 2, anR software package primarily used for analyzing admixture, in collaboration withNick Patterson.[24]

Books

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Notes

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  1. ^Reich (2009) excluded theAustro-Asiatic andTibeto-Burman speakers from their analysis in order to avoid interference.
  2. ^Reich (2009): "We analyze 25 diverse groups to provide strong evidence for two ancient populations, genetically divergent, that are ancestral to most Indians today. One, the "Ancestral North Indians" (ANI), is genetically close to Middle Easterners, Central Asians, and Europeans, while the other, the "Ancestral South Indians" (ASI), is as distinct from ANI and East Asians as they are from each other."
  3. ^Moorjani et al. (2013): "Most Indian groups descend from a mixture of two genetically divergent populations: Ancestral North Indians (ANI) related to Central Asians, Middle Easterners, Caucasians, and Europeans; and Ancestral South Indians (ASI) not closely related to groups outside the subcontinent."
  4. ^Moorjani et al. (2013): "We report genome-wide data from 73 groups from the Indian subcontinent and analyze linkage disequilibrium to estimate ANI-ASI mixture dates ranging from about 1,900 to 4,200 years ago. In a subset of groups, 100% of the mixture is consistent with having occurred during this period. These results show that India experienced a demographic transformation several thousand years ago, from a region in which major population mixture was common to one in which mixture even between closely related groups became rare because of a shift to endogamy."

References

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  1. ^"365 days: Nature's 10".Nature.528 (7583):459–467. 2015.Bibcode:2015Natur.528..459..doi:10.1038/528459a.ISSN 0028-0836.PMID 26701036.
  2. ^"York archaeologist wins the 2022 Antiquity Prize".University of York.
  3. ^abReich, David Emile (1999).Genetic analysis of human evolutionary history with implications for gene mapping.ox.ac.uk (DPhil thesis). University of Oxford.OCLC 863264589.EThOS uk.bl.ethos.580823.Free access icon
  4. ^"David Reich | Genetics".genetics.hms.harvard.edu. Retrieved2018-01-08.
  5. ^ab"Nature's 10".Nature.528 (7583):459–467. December 2015.Bibcode:2015Natur.528..459..doi:10.1038/528459a.PMID 26701036.S2CID 4450003.
  6. ^Massry Prize 2021
  7. ^abcZimmer, Carl (2018-03-20)."David Reich Unearths Human History Etched in Bone".The New York Times. Retrieved2018-03-20.
  8. ^Rincon, Paul (11 April 2018)."How ancient DNA is transforming our view of the past".BBC. Retrieved11 April 2018.
  9. ^"CEE ANNOUNCES 30 OUTSTANDING ALUMNI IN STEM and BUSINESS | Center for Excellence in Education".www.cee.org. Retrieved2019-02-07.
  10. ^Emile., Reich, David (1999).Genetic analysis of human evolutionary history with implications for gene mapping (Thesis). University of Oxford.{{cite thesis}}: CS1 maint: multiple names: authors list (link)
  11. ^ScienceNews.org – 'Hybrid-Driven Evolution: Genomes show complexity of human-chimp split: Not only did the evolutionary parting of human from chimpanzee ancestors occur more recently than had been indicated by previous data, but it also played out over an extended period during which forerunners of people and chimps interbred', Bruce Bower,Science News (May 20, 2006)
  12. ^Patterson, N.; Richter, D. J.; Gnerre, S.; Lander, E. S.; Reich, D. (2006). "Genetic evidence for complex speciation of humans and chimpanzees".Nature.441 (7097):1103–1108.Bibcode:2006Natur.441.1103P.doi:10.1038/nature04789.PMID 16710306.S2CID 2325560.
  13. ^Reich 2009.
  14. ^Chakravarti, Aravinda (24 September 2009)."Tracing India's invisible lthreads"(PDF).Nature (News & Views). Archived fromthe original(PDF) on 3 September 2015. Retrieved16 March 2016.
  15. ^Dolgin, Elie (September 23, 2009)."Indian ancestry revealed".Nature.doi:10.1038/news.2009.935 – via www.nature.com.
  16. ^Srinath Perur,The origins of Indians. What our genes are telling us., Fountain Ink
  17. ^Metspalu et al. 2011.
  18. ^David Cameron (July 20, 2011)."Detail distinguishes map of African-American genomics".Harvard Gazette. RetrievedJuly 22, 2011.
  19. ^Reich, D.; Green, R.E.; Kircher, M.; Krause, J.; Patterson, N.; Durand, E.Y.; et al. (2010)."Genetic history of an archaic hominin group from Denisova Cave in Siberia".Nature.468 (7327):1053–1060.Bibcode:2010Natur.468.1053R.doi:10.1038/nature09710.PMC 4306417.PMID 21179161.Reich, D.; Patterson, N.; Kircher, M.; Delfin, F.; Nandineni, M.R.; Pugach, I.; et al. (2011)."Denisova Admixture and the First Modern Human Dispersals into Southeast Asia and Oceania".The American Journal of Human Genetics.89 (4):516–528.doi:10.1016/j.ajhg.2011.09.005.PMC 3188841.PMID 21944045.Sankararaman, S.; Patterson, N.; Li, H.; Pääbo, S.; Reich, D; Akey, J.M. (2012)."The Date of Interbreeding between Neandertals and Modern Humans".PLOS Genetics.8 (10) e1002947.arXiv:1208.2238.doi:10.1371/journal.pgen.1002947.PMC 3464203.PMID 23055938.Carl Zimmer, "Interbreeding with Neanderthals",Discover, March 2013, pp. 38–44.
  20. ^"A common genetic risk factor for colorectal and prostate cancer"(PDF). Archived fromthe original(PDF) on 2018-03-27.
  21. ^Reich 2018, pp. 247–8.
  22. ^Reich 2018, p. 120.
  23. ^Reich 2018, p. 216.
  24. ^"Inferring demographic history from genetic data".uqrmaie1.github.io. Retrieved2022-05-18.

Sources

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External links

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