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DEK (gene)

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
DEK
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1Q1V,2JX3

Identifiers
AliasesDEK, D6S231E, DEK proto-oncogene
External IDsOMIM:125264;MGI:1926209;HomoloGene:2593;GeneCards:DEK;OMA:DEK - orthologs
Gene location (Human)
Chromosome 6 (human)
Chr.Chromosome 6 (human)[1]
Chromosome 6 (human)
Genomic location for DEK
Genomic location for DEK
Band6p22.3Start18,223,860bp[1]
End18,264,548bp[1]
Gene location (Mouse)
Chromosome 13 (mouse)
Chr.Chromosome 13 (mouse)[2]
Chromosome 13 (mouse)
Genomic location for DEK
Genomic location for DEK
Band13 A5|13 24.5 cMStart47,238,251bp[2]
End47,259,677bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • Achilles tendon

  • epithelium of nasopharynx

  • ventricular zone

  • tibia

  • ganglionic eminence

  • trabecular bone

  • amniotic fluid

  • germinal epithelium

  • skin of hip

  • jejunal mucosa
Top expressed in
  • tail of embryo

  • zygote

  • genital tubercle

  • secondary oocyte

  • primary oocyte

  • epiblast

  • bone marrow

  • ventricular zone

  • thymus

  • yolk sac
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

7913

110052

Ensembl

ENSG00000124795

ENSMUSG00000021377

UniProt

P35659

Q7TNV0

RefSeq (mRNA)

NM_001134709
NM_003472

NM_025900

RefSeq (protein)

NP_001128181
NP_003463

NP_080176

Location (UCSC)Chr 6: 18.22 – 18.26 MbChr 13: 47.24 – 47.26 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

The humanDEKgene encodes the DEKprotein.[5][6]

Function

[edit]

This gene encodes a protein with one SAP domain. The protein binds tocruciform DNA andDNA coiled into asuperhelix, thereby inducing positive supercoils into closed circular DNA. It is also involved in splice site selection duringmRNA processing. Chromosomal aberrations involving this region increased expression of this gene and the presence of antibodies against this protein are all associated with various diseases.[6]

Interactions

[edit]

DEKinteracts withTFAP2A.[7]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000124795Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000021377Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^von Lindern M, Fornerod M, van Baal S, Jaegle M, de Wit T, Buijs A, Grosveld G (Apr 1992)."The translocation (6;9), associated with a specific subtype of acute myeloid leukemia, results in the fusion of two genes, dek and can, and the expression of a chimeric, leukemia-specific dek-can mRNA".Mol. Cell. Biol.12 (4):1687–97.doi:10.1128/mcb.12.4.1687.PMC 369612.PMID 1549122.
  6. ^ab"Entrez Gene: DEK DEK oncogene (DNA binding)".
  7. ^Campillos M, García MA, Valdivieso F, Vázquez J (Mar 2003)."Transcriptional activation by AP-2alpha is modulated by the oncogene DEK".Nucleic Acids Res.31 (5):1571–5.doi:10.1093/nar/gkg247.PMC 149840.PMID 12595566.

Further reading

[edit]

External links

[edit]
  • PDBe-KB provides an overview of all the structure information available in the PDB for Human Protein DEK
PDB gallery
  • 1q1v: Structure of the Oncoprotein DEK: a putative DNA-binding Domain Related to the Winged Helix Motif
    1q1v: Structure of the Oncoprotein DEK: a putative DNA-binding Domain Related to the Winged Helix Motif


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