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Calcineurin

From Wikipedia, the free encyclopedia
Class of enzymes
Crystallographic structure of calcineurin heterodimer composed of the catalytic (PPP3CA) and regulatory (PPP3R1) subunits.[1]

Calcineurin (CaN) is acalcium andcalmodulin dependentserine/threonine protein phosphatase (also known asprotein phosphatase 3, and calcium-dependent serine-threonine phosphatase).[2] It activates theT cells of the immune system and can be blocked by drugs. Calcineurin activates nuclear factor of activated T cell cytoplasmic (NFATc), atranscription factor, bydephosphorylating it. The activated NFATc is thentranslocated into the nucleus, where it upregulates the expression ofinterleukin 2 (IL-2), which, in turn, stimulates the growth and differentiation of theT cell response. Calcineurin is the target of a class of drugs calledcalcineurin inhibitors, which includeciclosporin,voclosporin,pimecrolimus andtacrolimus.

Calcineurin is a highly conserved protein withineukaryotic life, appearing within organisms fromyeasts tomammals.[3]

Structure

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Calcineurin is a heterodimer of a 61-kD calmodulin-binding catalytic subunit, calcineurin A and a 19-kD Ca2+-binding regulatory subunit, calcineurin B. In humans, there are three isozymes of the catalytic subunit, each encoded by a separate gene (PPP3CA,PPP3CB, andPPP3CC) and two isoforms of the regulatory, also encoded by separate genes (PPP3R1,PPP3R2).

protein phosphatase 3, catalytic subunit, alpha isozyme
Identifiers
SymbolPPP3CA
Alt. symbolsCALN, CALNA
NCBI gene5530
HGNC9314
OMIM114105
RefSeqNM_000944
UniProtQ08209
Other data
EC number3.1.3.16
LocusChr. 4q24
Search for
StructuresSwiss-model
DomainsInterPro
protein phosphatase 3, catalytic subunit, beta isozyme
Identifiers
SymbolPPP3CB
Alt. symbolsCALNB
NCBI gene5532
HGNC9315
OMIM114106
RefSeqNM_021132
UniProtP16298
Other data
EC number3.1.3.16
LocusChr. 10q22.2
Search for
StructuresSwiss-model
DomainsInterPro
protein phosphatase 3, catalytic subunit, gamma isozyme
Identifiers
SymbolPPP3CC
NCBI gene5533
HGNC9316
OMIM114107
RefSeqNM_005605
UniProtP48454
Other data
EC number3.1.3.16
LocusChr. 8p21.3
Search for
StructuresSwiss-model
DomainsInterPro
protein phosphatase 3, regulatory subunit B, alpha
Identifiers
SymbolPPP3R1
NCBI gene5534
HGNC9317
OMIM601302
RefSeqNM_000945
UniProtP63098
Other data
EC number3.1.3.16
LocusChr. 2p14
Search for
StructuresSwiss-model
DomainsInterPro
protein phosphatase 3, regulatory subunit B, beta
Identifiers
SymbolPPP3R2
NCBI gene5535
HGNC9318
OMIM613821
RefSeqNM_147180
UniProtQ96LZ3
Other data
EC number3.1.3.16
LocusChr. 9q31
Search for
StructuresSwiss-model
DomainsInterPro

Calcineurin A contains the active site, which is between 57-9 kDa depending on isoform, with larger catalytic subunits found in lower eukaryotes such asSaccharomyces fungus.[3] This catalytic subunit consists of a catalytic domain homologous to otherserine/threonine protein phosphatases as well as three unique regulatory domains at the COOH terminus.[3] These three regulatory domains were found to be the binding domain of the regulatory subunit of calcineurin B, the domain forcalmodulin binding, and the autoinhibitory domain.[3] Whencalmodulin or Ca2+ is absent, the autoinhibitory domain binds to the active site, inhibiting activity.[3] Conformational changes with the binding ofcalmodulin or Ca2+ frees the active site and resumes calcineurin function.[3]

Mechanism of action

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When anantigen-presenting cell interacts with aT cell receptor onT cells, there is an increase in the cytoplasmic level of calcium, which activates calcineurin by binding a regulatory subunit and activatingcalmodulin binding.[4] Calcineurin induces transcription factors (NFATs) that are important in the transcription of IL-2 genes. IL-2 activates T-helper lymphocytes and induces the production of other cytokines. In this way, it governs the action ofcytotoxic lymphocytes. The amount of IL-2 being produced by the T-helper cells is believed to influence the extent of the immune response significantly.

Calcineurin directly dephosphorylates cytoplasmic subunits of theNFAT1 transcription complex, operating through direct binding through a conserved N terminus.[5] Translocation of theNFAT transcription factors into the nucleus is maintained via the concentration of Ca2+ ions due to the integration of Ca2+ signaling withinmitogen-activated protein kinase inNFAT, the activity ofCalmodulin can act as a coincidence detector for Ras signaling pathways.[5] Dissociation of histone deacetylase 4 (HDAC) by calcineurin leads to regulation of theMef2 transcription factor, which mediates transition of fast muscle fibers to slow muscle fibers.[5] This ability to regulate muscular fiber conversion has implications for the developmental impact of the protein and also is believed to be connected to regulation ofprogrammed cell death.[5]

Function

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Formation of Structures in Newborn Mammals

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Synaptic Connection

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Calcineurin is suggested to be a critical component in the formation of synaptic connections. NFATc4 is found to be expressed inhippocampal neurons, with translocation viadepolarization and normal synaptic activity.[5] This in conjunction with a potential downstream gene encoding a Ca2+ channel (IP3R1) form the basis for the potential linkage of calcineurin to synaptic connections, especially within newborn animals which have activation of IP3R1.[5] Should further research support the possible connection between this protein and synapse connection, it would open new directions of study for neurological development in animals.

Cardiovascular

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Heart valve formation andmyocardial hypertrophy are also believed to be signaled through the calcineurin signaling pathway. Mutations in the NFATc1 gene are reported to cause failure of development in heart valves,[5] meaning that the calcineurintranscription factor controls a vital developmental pathway for survival of newborn animals. In transgenic mice presenting this mutation are shown to die fromcongestive heart failure in utero.[3] Stress-induced hypertrophy, a response in cardiac muscle cells, is dependent on calcium, and was discovered to also be induced by overexpression of calcineurin A.[5] Additionally, overexpression of NFATc4 could also induce similar results, and cyclosporin A prevents cardiac hypertrophy development in response to certain stimuli.[5]

Calcineurin is also found to play a critical role in the development of several other structures and functions, such as the liver, skin, inflammatory and immune response.[5] This is shown through the augmentation of suboptimal stimuli through the use of calcium, as well as blocking by cyclosporin A.[5]

Cell Cycle Arrest Recovery inSaccharomyces cerevisiae

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Mediation of pheromone-induced growth arrest for mating is performed by a Ca2+ increase and activation of calcineurin.[3] Strains lacking in either of two yeast calcineurin A subunits were unable to recover from growth arrest.[3]Calmodulin is also found to be required from this growth arrest,[3] meaning that all factors which govern calcineurin activation as well as the protein itself are necessary for proper function of yeast cells. Without the ability to escape growth arrest, yeast cells are unable to exit G1, removing the ability to continue through the cell cycle and engage inasexual reproduction.

Functions in Sleep

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Presence and abundance of Calcineurin Aα in mice affects the intensity ofnon-rapid eye movement sleep (NREMS).[6] In mice which overexpression of the protein subunit occurs, it is observed that the amount of sleep and as a result wakefulness is increased.[6] Furthermore, deficiency or knockout of the subunit leads to diminishedNREMS in affected mice,[6] showing the coupling of sleep with the function of the calcineurin protein. Severeinsomnia was also exhibited in mice which lacked CnB1, as well as an increased circadian period as compared to wild type mice.[6]

Clinical relevance

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Rheumatic diseases

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Calcineurin inhibitors are prescribed for adultrheumatoid arthritis (RA) as a single drug or in combination withmethotrexate. The microemulsion formulation is approved by the U.S.Food and Drug Administration for treatment of severely active RA. It is also prescribed for:psoriatic arthritis,psoriasis, acute ocularBehçet's disease,juvenile idiopathic arthritis, adult and juvenilepolymyositis anddermatomyositis, adult and juvenilesystemic lupus erythematosus, adult lupusmembranous nephritis,systemic sclerosis,aplastic anemia, steroid-resistantnephrotic syndrome,atopic dermatitis, severe corticosteroid-dependentasthma, severeulcerative colitis,pemphigus vulgaris,myasthenia gravis, anddry eye disease, with or withoutSjögren's syndrome (administered as ophthalmic emulsion).[7]

Schizophrenia

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Calcineurin is linked to receptors for several brain chemicals includingglutamate,dopamine andGABA.[8] An experiment with genetically-altered mice that could not produce calcineurin showed similar symptoms as in humans withschizophrenia: impairment inworking memory, attention deficits, aberrant social behavior, and several other abnormalities characteristic of schizophrenia.[9]

Diabetes

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Calcineurin along with NFAT, may improve the function of diabetics'pancreaticbeta cells.[10][11] Thus tacrolimus contributes to the frequent development of new diabetes following renal transplantation.[12]

Calcineurin/NFAT signaling is required for perinatal lung maturation and function.[13]

Organ transplantation

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Calcineurin inhibitors such astacrolimus andciclosporin are used to suppress the immune system in organallotransplant recipients to prevent rejection of the transplanted tissue.[14]

Interactions

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Calcineurin has been shown tointeract withRCAN1[15] andAKAP5.[16]

Viral Inhibition

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Inhibition of calcineurin is also found to be performed by encoded proteins in viruses. Notably, theAfrican swine fever virus encodes the A238L protein, which binds to calcineurin and inhibits translocation and function of NFATc.[5] Given sequence similarity between A238L and NFATc family members suggests that the protein induces cyclosporin-likeimmunosuppression in host cells.[5]

References

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  1. ^PDB:1AUI​;Kissinger CR, Parge HE, Knighton DR, Lewis CT, Pelletier LA, Tempczyk A, Kalish VJ, Tucker KD, Showalter RE, Moomaw EW (December 1995). "Crystal structures of human calcineurin and the human FKBP12-FK506-calcineurin complex".Nature.378 (6557):641–4.Bibcode:1995Natur.378..641K.doi:10.1038/378641a0.PMID 8524402.S2CID 4337105.
  2. ^Liu L, Zhang J, Yuan J, Dang Y, Yang C, Chen X, Xu J, Yu L (March 2005). "Characterization of a human regulatory subunit of protein phosphatase 3 gene (PPP3RL) expressed specifically in testis".Mol. Biol. Rep.32 (1):41–5.doi:10.1007/s11033-004-4250-4.PMID 15865209.S2CID 43848098.
  3. ^abcdefghijRusnak, Frank; Mertz, Pamela (2000-01-10)."Calcineurin: Form and Function".Physiological Reviews.80 (4):1483–1521.doi:10.1152/physrev.2000.80.4.1483.ISSN 0031-9333.PMID 11015619.
  4. ^Yamashita M, Katsumata M, Iwashima M, Kimura M, Shimizu C, Kamata T, Shin T, Seki N, Suzuki S, Taniguchi M, Nakayama T (June 2000)."T cell receptor-induced calcineurin activation regulates T helper type 2 cell development by modifying the interleukin 4 receptor signaling complex".J. Exp. Med.191 (11):1869–79.doi:10.1084/jem.191.11.1869.PMC 2213529.PMID 10839803.
  5. ^abcdefghijklmCrabtree, Gerald R. (January 2001)."Calcium, Calcineurin, and the Control of Transcription".Journal of Biological Chemistry.276 (4):2313–2316.doi:10.1074/jbc.R000024200.PMID 11096121.
  6. ^abcdYin, Xin; Zhang, Zihan; Zhou, Rui; Zuo, Peng; Sang, Di; Zhou, Shuang; Shi, Bihan; Chen, Lin; Wu, Chongyang; Guo, Ying; Wang, Fengchao; Zhang, Eric Erquan; Li, Qi; Yanagisawa, Masashi; Liu, Qinghua (2025-01-28)."Calcineurin governs baseline and homeostatic regulations of non–rapid eye movement sleep in mice".Proceedings of the National Academy of Sciences.122 (4) e2418317122.doi:10.1073/pnas.2418317122.ISSN 0027-8424.PMC 11789068.PMID 39847332.
  7. ^"Pharmacology and side effects of cyclosporine and tacrolimus".UpToDate. 2014-04-10.
  8. ^Bannai H, Lévi S, Schweizer C, Inoue T, Launey T, Racine V, Sibarita JB, Mikoshiba K, Triller A (2009)."Activity-dependent tuning of inhibitory neurotransmission based on GABAAR diffusion dynamics".Neuron.62 (5):670–82.doi:10.1016/j.neuron.2009.04.023.PMID 19524526.S2CID 18512241.
  9. ^Miyakawa T, Leiter LM, Gerber DJ, Gainetdinov RR, Sotnikova TD, Zeng H, Caron MG, Tonegawa S (July 2003)."Conditional calcineurin knockout mice exhibit multiple abnormal behaviors related to schizophrenia".Proc. Natl. Acad. Sci. U.S.A.100 (15):8987–92.Bibcode:2003PNAS..100.8987M.doi:10.1073/pnas.1432926100.PMC 166425.PMID 12851457.
  10. ^Heit JJ, Apelqvist AA, Gu X, Winslow MM, Neilson JR, Crabtree GR, Kim SK (September 2006). "Calcineurin/NFAT signalling regulates pancreatic beta-cell growth and function".Nature.443 (7109):345–9.Bibcode:2006Natur.443..345H.doi:10.1038/nature05097.PMID 16988714.S2CID 4397036.
  11. ^Heit JJ (October 2007). "Calcineurin/NFAT signaling in the beta-cell: From diabetes to new therapeutics".BioEssays.29 (10):1011–21.doi:10.1002/bies.20644.PMID 17876792.S2CID 21027866.
  12. ^Crutchlow MF, Bloom RD (2007)."Transplant-associated hyperglycemia: a new look at an old problem".Clin J Am Soc Nephrol.2 (2):343–55.doi:10.2215/CJN.03671106.PMID 17699434.
  13. ^Davé V, Childs T, Xu Y, Ikegami M, Besnard V, Maeda Y, Wert SE, Neilson JR, Crabtree GR, Whitsett JA (October 2006)."Calcineurin/Nfat signaling is required for perinatal lung maturation and function".J. Clin. Invest.116 (10):2597–609.doi:10.1172/JCI27331.PMC 1570374.PMID 16998587.
  14. ^"Tacrolimus".New Zealand Formulary v81. 1 March 2019.
  15. ^Fuentes JJ, Genescà L, Kingsbury TJ, Cunningham KW, Pérez-Riba M, Estivill X, de la Luna S (July 2000)."DSCR1, overexpressed in Down syndrome, is an inhibitor of calcineurin-mediated signaling pathways".Hum. Mol. Genet.9 (11):1681–90.doi:10.1093/hmg/9.11.1681.PMID 10861295.
  16. ^Kashishian A, Howard M, Loh C, Gallatin WM, Hoekstra MF, Lai Y (October 1998)."AKAP79 inhibits calcineurin through a site distinct from the immunophilin-binding region".J. Biol. Chem.273 (42):27412–9.doi:10.1074/jbc.273.42.27412.PMID 9765270.

Further reading

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External links

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PDB gallery
  • 1aui: HUMAN CALCINEURIN HETERODIMER
    1aui: HUMAN CALCINEURIN HETERODIMER
  • 1m63: Crystal structure of calcineurin-cyclophilin-cyclosporin shows common but distinct recognition of immunophilin-drug complexes
    1m63: Crystal structure of calcineurin-cyclophilin-cyclosporin shows common but distinct recognition of immunophilin-drug complexes
  • 1mf8: Crystal Structure of human calcineurin complexed with cyclosporin A and human cyclophilin
    1mf8: Crystal Structure of human calcineurin complexed with cyclosporin A and human cyclophilin
  • 1tco: TERNARY COMPLEX OF A CALCINEURIN A FRAGMENT, CALCINEURIN B, FKBP12 AND THE IMMUNOSUPPRESSANT DRUG FK506 (TACROLIMUS)
    1tco: TERNARY COMPLEX OF A CALCINEURIN A FRAGMENT, CALCINEURIN B, FKBP12 AND THE IMMUNOSUPPRESSANT DRUG FK506 (TACROLIMUS)
  • 2jog: Structure of the calcineurin-NFAT complex
    2jog: Structure of the calcineurin-NFAT complex
  • 2p6b: Crystal Structure of Human Calcineurin in Complex with PVIVIT Peptide
    2p6b: Crystal Structure of Human Calcineurin in Complex with PVIVIT Peptide
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