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CX3CL1

From Wikipedia, the free encyclopedia
Protein-coding gene in humans

CX3CL1
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1B2T,1F2L,3ONA,4XT1,4XT3

Identifiers
AliasesCX3CL1, ABCD-3, C3Xkine, CXC3, CXC3C, NTN, NTT, SCYD1, fractalkine, neurotactin, C-X3-C motif chemokine ligand 1
External IDsOMIM:601880;MGI:1097153;HomoloGene:2251;GeneCards:CX3CL1;OMA:CX3CL1 - orthologs
Gene location (Human)
Chromosome 16 (human)
Chr.Chromosome 16 (human)[1]
Chromosome 16 (human)
Genomic location for CX3CL1
Genomic location for CX3CL1
Band16q21Start57,372,477bp[1]
End57,385,044bp[1]
Gene location (Mouse)
Chromosome 8 (mouse)
Chr.Chromosome 8 (mouse)[2]
Chromosome 8 (mouse)
Genomic location for CX3CL1
Genomic location for CX3CL1
Band8 C5|8 46.79 cMStart95,498,637bp[2]
End95,509,055bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right lung

  • right coronary artery

  • prefrontal cortex

  • olfactory zone of nasal mucosa

  • frontal pole

  • ascending aorta

  • Descending thoracic aorta

  • right frontal lobe

  • popliteal artery

  • tibial arteries
Top expressed in
  • perirhinal cortex

  • entorhinal cortex

  • CA3 field

  • visual cortex

  • primary visual cortex

  • olfactory tubercle

  • superior frontal gyrus

  • primary motor cortex

  • prefrontal cortex

  • nucleus accumbens
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6376

20312

Ensembl

ENSG00000006210

ENSMUSG00000031778

UniProt

P78423

O35188

RefSeq (mRNA)

NM_002996
NM_001304392

NM_009142

RefSeq (protein)

NP_001291321
NP_002987

NP_033168

Location (UCSC)Chr 16: 57.37 – 57.39 MbChr 8: 95.5 – 95.51 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Fractalkine, also known aschemokine (C-X3-C motif) ligand 1, is aprotein that in humans is encoded by theCX3CL1gene.

Tissue distribution

[edit]

Fractalkine is found commonly throughout the brain, particularly in neural cells, and its receptor is known to be present on microglial cells. It has also been found to be essential for microglial cell migration.[5] CX3CL1 is also up-regulated in thehippocampus during a brief temporal window followingspatial learning, the purpose of which may be to regulate glutamate-mediated neurotransmission tone. This indicates a possible role for the chemokine in the protective plasticity process ofsynaptic scaling.[6]

Structure

[edit]

Fractalkine is a largecytokine protein of 373 amino acids that contains multiple domains and is the only known member of the CX3Cchemokine family. It is also commonly known under the names fractalkine (in humans) and neurotactin (in mice).[7][8] The polypeptide structure of CX3CL1 differs from the typical structure of other chemokines. For example, the spacing of the characteristicN-terminalcysteines differs; there are threeamino acids separating the initial pair of cysteines in CX3CL1, with none inCC chemokines and only one intervening amino acid inCXC chemokines. CX3CL1 is produced as a long protein (with 373-amino acid in humans) with an extendedmucin-like stalk and a chemokine domain on top. The mucin-like stalk permits it to bind to the surface of certain cells. However a soluble (90 kD) version of this chemokine has also been observed.

Function

[edit]

Soluble CX3CL1 potently chemoattractsT cells andmonocytes, while the cell-bound chemokine promotes strong adhesion of leukocytes to activated endothelial cells, where it is primarily expressed.[8] CX3CL1 elicits its adhesive and migratory functions by interacting with the chemokine receptorCX3CR1.[9] Its gene is located on humanchromosome 16 along with some CC chemokines known asCCL17 andCCL22.[8][10]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000006210Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000031778Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Maciejewski-Lenoir D, Chen S, Feng L, Maki R, Bacon KB (1999-08-01)."Characterization of fractalkine in rat brain cells: migratory and activation signals for CX3CR-1-expressing microglia".Journal of Immunology.163 (3). Baltimore, Md.:1628–1635.doi:10.4049/jimmunol.163.3.1628.ISSN 0022-1767.PMID 10415068.
  6. ^Sheridan GK, Wdowicz A, Pickering M, Watters O, Halley P, O'Sullivan NC, et al. (2014)."CX3CL1 is up-regulated in the rat hippocampus during memory-associated synaptic plasticity".Frontiers in Cellular Neuroscience.8: 233.doi:10.3389/fncel.2014.00233.PMC 4130185.PMID 25161610.
  7. ^Pan Y, Lloyd C, Zhou H, Dolich S, Deeds J, Gonzalo JA, et al. (Jun 1997). "Neurotactin, a membrane-anchored chemokine upregulated in brain inflammation".Nature.387 (6633):611–617.Bibcode:1997Natur.387..611P.doi:10.1038/42491.PMID 9177350.S2CID 4307876.
  8. ^abcBazan JF, Bacon KB, Hardiman G, Wang W, Soo K, Rossi D, et al. (Feb 1997). "A new class of membrane-bound chemokine with a CX3C motif".Nature.385 (6617):640–644.Bibcode:1997Natur.385..640B.doi:10.1038/385640a0.PMID 9024663.S2CID 4322166.
  9. ^Imai T, Hieshima K, Haskell C, Baba M, Nagira M, Nishimura M, et al. (Nov 1997)."Identification and molecular characterization of fractalkine receptor CX3CR1, which mediates both leukocyte migration and adhesion".Cell.91 (4):521–530.doi:10.1016/S0092-8674(00)80438-9.PMID 9390561.S2CID 17281691.
  10. ^Nomiyama H, Imai T, Kusuda J, Miura R, Callen DF, Yoshie O (1998). "Human chemokines fractalkine (SCYD1), MDC (SCYA22) and TARC (SCYA17) are clustered on chromosome 16q13".Cytogenetics and Cell Genetics.81 (1):10–11.doi:10.1159/000015000.PMID 9691168.S2CID 46851784.

External links

[edit]

Further reading

[edit]
PDB gallery
  • 1b2t: SOLUTION STRUCTURE OF THE CX3C CHEMOKINE DOMAIN OF FRACTALKINE
    1b2t: SOLUTION STRUCTURE OF THE CX3C CHEMOKINE DOMAIN OF FRACTALKINE
  • 1f2l: CRYSTAL STRUCTURE OF CHEMOKINE DOMAIN OF FRACTALKINE
    1f2l: CRYSTAL STRUCTURE OF CHEMOKINE DOMAIN OF FRACTALKINE
By family
Chemokine
CCL
CXCL
CX3CL
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Ungrouped
CXC
CXCR1
(IL-8Rα)
CXCR2
(IL-8Rβ)
CXCR3
CXCR4
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CXCR7
C (XC)
XCR1
CX3C
CX3CR1
Others
CCBP2
CMKLR1
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