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Calcium channel, voltage-dependent, T type, alpha 1H subunit

From Wikipedia, the free encyclopedia
(Redirected fromCACNA1H)
Protein found in humans

CACNA1H
Identifiers
AliasesCACNA1H, CACNA1HB, Cav3.2, ECA6, EIG6, calcium voltage-gated channel subunit alpha1 H, HALD4
External IDsOMIM:607904;MGI:1928842;HomoloGene:56913;GeneCards:CACNA1H;OMA:CACNA1H - orthologs
Gene location (Human)
Chromosome 16 (human)
Chr.Chromosome 16 (human)[1]
Chromosome 16 (human)
Genomic location for CACNA1H
Genomic location for CACNA1H
Band16p13.3Start1,153,106bp[1]
End1,221,771bp[1]
Gene location (Mouse)
Chromosome 17 (mouse)
Chr.Chromosome 17 (mouse)[2]
Chromosome 17 (mouse)
Genomic location for CACNA1H
Genomic location for CACNA1H
Band17 A3.3|17 12.53 cMStart25,593,259bp[2]
End25,652,757bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • muscle layer of sigmoid colon

  • left ovary

  • right ovary

  • gastric mucosa

  • popliteal artery

  • tibial arteries

  • body of uterus

  • left uterine tube

  • right coronary artery

  • anterior pituitary
Top expressed in
  • neural layer of retina

  • seminiferous tubule

  • olfactory tubercle

  • spermatocyte

  • spermatid

  • saccule

  • superior frontal gyrus

  • nucleus accumbens

  • dentate gyrus of hippocampal formation granule cell

  • internal carotid artery
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

8912

58226

Ensembl

ENSG00000196557

ENSMUSG00000024112

UniProt

O95180

O88427

RefSeq (mRNA)

NM_001005407
NM_021098

NM_001163691
NM_021415

RefSeq (protein)

NP_001005407
NP_066921

n/a

Location (UCSC)Chr 16: 1.15 – 1.22 MbChr 17: 25.59 – 25.65 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Calcium channel, voltage-dependent, T type, alpha 1H subunit, also known asCACNA1H, is aprotein which in humans is encoded by theCACNA1Hgene.[5][6][7]

Function

[edit]

This gene encodes Cav3.2, a T-type member of the α1 subunit family, a protein in thevoltage-dependent calcium channel complex. Calcium channels mediate the influx of calcium ions into the cell upon membrane polarization and consist of a complex of α1, α2δ, β, and γ subunits in a 1:1:1:1 ratio. The α1 subunit has 24 transmembrane segments and forms the pore through which ions pass into the cell. There are multipleisoforms of each of the proteins in the complex, either encoded by different genes or the result ofalternative splicing of transcripts. Alternate transcriptional splice variants, encoding different isoforms, have been characterized for the gene described here.[5]

Clinical significance

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Studies suggest certain mutations in this gene lead tochildhood absence epilepsy (CAE).[8] Variants of Cav3.2 with increased channel activity contribute to susceptibility toidiopathic generalized epilepsy (IGE), but are not sufficient to induce epilepsy on their own.[9] The SFARIgene database lists CACNA1H with anautism score of 2.1, indicating a candidate causal relationship withautism.

See also

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References

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  1. ^abcGRCh38: Ensembl release 89: ENSG00000196557Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000024112Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ab"Entrez Gene: CACNA1H calcium channel, voltage-dependent, T type, alpha 1H subunit".
  6. ^Cribbs LL, Lee JH, Yang J, Satin J, Zhang Y, Daud A, Barclay J, Williamson MP, Fox M, Rees M, Perez-Reyes E (July 1998)."Cloning and characterization of alpha1H from human heart, a member of the T-type Ca2+ channel gene family".Circ. Res.83 (1):103–9.doi:10.1161/01.res.83.1.103.PMID 9670923.
  7. ^Catterall WA, Perez-Reyes E, Snutch TP, Striessnig J (December 2005). "International Union of Pharmacology. XLVIII. Nomenclature and structure-function relationships of voltage-gated calcium channels".Pharmacol. Rev.57 (4):411–25.doi:10.1124/pr.57.4.5.PMID 16382099.S2CID 10386627.
  8. ^Chen Y, Lu J, Pan H, Zhang Y, Wu H, Xu K, Liu X, Jiang Y, Bao X, Yao Z, Ding K, Lo WH, Qiang B, Chan P, Shen Y, Wu X (August 2003)."Association between genetic variation of CACNA1H and childhood absence epilepsy".Ann. Neurol.54 (2):239–43.doi:10.1002/ana.10607.PMID 12891677.S2CID 33233159.
  9. ^Heron SE, Khosravani H, Varela D, Bladen C, Williams TC, Newman MR, Scheffer IE, Berkovic SF, Mulley JC, Zamponi GW (December 2007). "Extended spectrum of idiopathic generalized epilepsies associated with CACNA1H functional variants".Ann. Neurol.62 (6):560–8.doi:10.1002/ana.21169.hdl:1880/106734.PMID 17696120.S2CID 33737531.

External links

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Further reading

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This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

Ligand-gated
Voltage-gated
Constitutively active
Proton-gated
Voltage-gated
Calcium-activated
Inward-rectifier
Tandem pore domain
Voltage-gated
Miscellaneous
Cl:Chloride channel
H+:Proton channel
M+:CNG cation channel
M+:TRP cation channel
H2O (+solutes):Porin
Cytoplasm:Gap junction
By gating mechanism
Ion channel class
see alsodisorders
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