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Bifidobacteriaceae

From Wikipedia, the free encyclopedia
Family of bacteria

Bifidobacteriaceae
Bifidobacterium adolescentis
Scientific classificationEdit this classification
Domain:Bacteria
Kingdom:Bacillati
Phylum:Actinomycetota
Class:Actinomycetes
Order:Bifidobacteriales
Stackebrandtet al. 1997[1]
Family:Bifidobacteriaceae
Stackebrandtet al. 1997[1]
Type genus
Bifidobacterium
Orla-Jensen 1924 (Approved Lists 1980)
Genera[2]

TheBifidobacteriaceae are the onlyfamily ofbacteria in theorderBifidobacteriales.[3]

The familyBifidobacteriaceae stain [Gram-positive], range from obligate to faculatively anaerobic, are non-motile, non-filamentous and non-spore forming.[4] Their morphology is varied and ranges from Y- or V-shaped (from which the bifidobacteria derived their name) to ones with enlarged or flattened ends (club- or spatula-shaped).[5] The branching nature ofBifidobacteria can change with different starins and media.[6] These rods appear as a solitary bacilli or as aggregates in chains or in clumps.[4]

Thesechemoorganotrophic microorganisms aresaccharolytic acid producers and do not produce gas.[4]

The Bifidobacteriaceae family is divided into ten genera (Bifidobacterium,Aeriscardovia,Alloscardovia,Bombiscardovia,Galliscardovia,Gardnerella,Neoscardovia,Parascardovia,Pseudoscardovia, andScardovia,[7] with three candidate generaCandidatus Ancillula,Candidatus Opitulatrix, andCandidatus Servula.[8]

Genomics

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AllBifidobacteraceae contain a peculiar metabolic pathway to catabolise six-carbon sugars (hexoses) involving the key enzymeFructose-6-phosphate phosphoketolase (EC 4.1.2.2), known as the fructose-6-phosphate pathway or the 'bifid shunt'.[4]

Comparative analysis of aligned protein sequences has led to the discovery of twoconserved signature indels which are specific for the orderBifidobacteriales. The firstindel, a 1amino acid deletion inribosomal protein L13, is found in allBifidobacteriales species and no otherActinomycetota, providing a potentialmolecular marker for the entireBifidobacteriales order. The second indel that has been identified is a 1 amino acid insertion inglucose-6-phosphate dehydrogenase found in allBifidobacterium species andG. vaginalis, but not in any otherActinomycetota. This indel is thus characteristic of theclade consisting ofBifidobacterium species andG. vaginalis and can be used to distinguish these genera from the rest of the orderBifidobacteriales. 16 conserved signature proteins have also been identified which are unique to the orderBifidobacteriales and can be used as molecular markers for this order. Additionally, 6 conserved signature proteins which are unique toBifidobacterium andGardnerella have been identified, providing further evidence that species from these two genera are closely related and providing molecular markers for the clade consisting of these genera.[9]

Phylogeny

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The currently accepted taxonomy is based on theList of Prokaryotic names with Standing in Nomenclature (LPSN).[2] The phylogeny is based on whole-genome analysis.[10]

outgroup

Actinomycetales

Notes

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References

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  1. ^abStackebrandt E, Rainey FA, Ward-Rainey NL (1997)."Proposal for a new hierarchic classification system,Actinobacteria classis nov".Int. J. Syst. Bacteriol.47 (2):479–491.doi:10.1099/00207713-47-2-479.
  2. ^abEuzéby JP, Parte AC."Bifidobacteriaceae".List of Prokaryotic names with Standing in Nomenclature (LPSN). RetrievedJune 15, 2021.
  3. ^Mantzourani M, Fenlon M, Beighton D (February 2009). "Association between Bifidobacteriaceae and the clinical severity of root caries lesions".Oral Microbiol. Immunol.24 (1):32–7.PMID 19121067.
  4. ^abcdD.A. Russell, R.P. Ross, G.F. Fitzgerald, C. Stanton (2011). "Metabolic activities and probiotic potential of bifidobacteria".International Journal of Food Microbiology.149 (1):88–105.doi:10.1016/j.ijfoodmicro.2011.06.003.ISSN 0168-1605.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  5. ^Alessandri G, van Sinderen D, Ventura M. (2021)."The genus bifidobacterium: From genomics to functionality of an important component of the mammalian gut microbiota running title: Bifidobacterial adaptation to and interaction with the host".Comput Struct Biotechnol J.9 (19):1472–1487.doi:10.1016/j.csbj.2021.03.006.PMC 7979991.PMID 33777340.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  6. ^G.W. Tannock (1999). "Identification of lactobacilli and bifidobacteria".Current Issues in Molecular Biology.1:53–64.
  7. ^Ludwig, W., Euzéby, J.P. and Whitman, W.B. (2015). M.E. Trujillo, S. Dedysh, P. DeVos, B. Hedlund, P. Kämpfer, F.A. Rainey and W.B. Whitman (ed.). "Taxonomic outline of the phylum Actinobacteria".Bergey's Manual of Systematics of Archaea and Bacteria.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  8. ^Silva JK, Herve V, Mies US, Platt K, Brune A. (2025). "A Novel Lineage of Endosymbiotic Actinomycetales: Genome Reduction and Acquisition of New Functions in Bifidobacteriaceae Associated With Termite Gut Flagellates".Environ Microbiol.27.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  9. ^Gao, B.; Gupta, R. S. (2012)."Phylogenetic Framework and Molecular Signatures for the Main Clades of the Phylum Actinobacteria".Microbiology and Molecular Biology Reviews.76 (1):66–112.doi:10.1128/MMBR.05011-11.PMC 3294427.PMID 22390973.
  10. ^Nouioui I, Carro L, García-López M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Markus Göker M (2018)."Genome-Based Taxonomic Classification of the PhylumActinobacteria".Front. Microbiol.9: 2007.doi:10.3389/fmicb.2018.02007.PMC 6113628.PMID 30186281.

External links

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Notes

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References

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External links

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Wikispecies has information related toBifidobacteriaceae.
Bifidobacteriaceae
Bifidobacteriales
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