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Adenosine diphosphate

From Wikipedia, the free encyclopedia
Adenosine diphosphate
Skeletal formula of ADP
Skeletal formula of ADP
Ball-and-stick model of ADP (shown here as a 3- ion)
Ball-and-stick model of ADP (shown here as a 3- ion)
Names
IUPAC name
Adenosine 5′-(trihydrogen diphosphate)
Systematic IUPAC name
[(2R,3S,4R,5R)-5-(6-Amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl trihydrogen diphosphate
Other names
Adenosine 5′-diphosphate; Adenosine 5′-pyrophosphate; Adenosine pyrophosphate
Identifiers
3D model (JSmol)
ChEBI
ChEMBL
ChemSpider
DrugBank
ECHA InfoCard100.000.356Edit this at Wikidata
EC Number
  • 218-249-0
KEGG
RTECS number
  • AU7467000
UNII
  • InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1 checkY
    Key: XTWYTFMLZFPYCI-KQYNXXCUSA-N checkY
  • InChI=1/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
    Key: XTWYTFMLZFPYCI-KQYNXXCUBP
  • O=P(O)(O)OP(=O)(O)OC[C@H]3O[C@@H](n2cnc1c(ncnc12)N)[C@H](O)[C@@H]3O
  • c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)O)O)O)N
Properties
C10H15N5O10P2
Molar mass427.201 g/mol
Density2.49 g/mL
logP−2.640
Hazards
Safety data sheet (SDS)MSDS
Except where otherwise noted, data are given for materials in theirstandard state (at 25 °C [77 °F], 100 kPa).
☒N verify (what is checkY☒N ?)
Chemical compound

Adenosine diphosphate (ADP), also known asadenosine pyrophosphate (APP), is an importantorganic compound inmetabolism and is essential to the flow of energy in livingcells. ADP consists of three important structural components: asugar backbone attached toadenine and twophosphate groups bonded to the 5 carbon atom ofribose. The diphosphate group of ADP is attached to the 5’ carbon of the sugar backbone, while the adenine attaches to the 1’ carbon.[1]

ADP can be interconverted toadenosine triphosphate (ATP) andadenosine monophosphate (AMP). ATP contains one more phosphate group than ADP, while AMP contains one fewer phosphate group. Energy transfer used by all living things is a result ofdephosphorylation of ATP by enzymes known asATPases. The cleavage of a phosphate group from ATP results in the coupling of energy to metabolic reactions and a by-product of ADP.[1] ATP is continually reformed from lower-energy species ADP and AMP. The biosynthesis of ATP is achieved throughout processes such assubstrate-level phosphorylation,oxidative phosphorylation, andphotophosphorylation, all of which facilitate the addition of a phosphate group to ADP.

Bioenergetics

[edit]

ADP cycling supplies theenergy needed to do work in a biological system, thethermodynamic process of transferring energy from one source to another. There are two types of energy:potential energy andkinetic energy. Potential energy can be thought of as stored energy, or usable energy that is available to do work. Kinetic energy is the energy of an object as a result of its motion. The significance of ATP is in its ability to store potential energy within the phosphate bonds. The energy stored between these bonds can then be transferred to do work. For example, the transfer of energy from ATP to the proteinmyosin causes a conformational change when connecting toactin duringmuscle contraction.[1]

The cycle of synthesis and degradation of ATP; 1 and 2 represent output and input of energy, respectively.

It takes multiple reactions between myosin and actin to effectively produce one muscle contraction, and, therefore, the availability of large amounts of ATP is required to produce each muscle contraction. For this reason, biological processes have evolved to produce efficient ways to replenish the potential energy of ATP from ADP.[2]

Breaking one of ATP's phosphorus bonds generates approximately 30.5kilojoules permole of ATP (7.3kcal).[3] ADP can be converted, or powered back to ATP through the process of releasing the chemical energy available in food; in humans, this is constantly performed viaaerobic respiration in themitochondria.[2] Plants usephotosynthetic pathways to convert and store energy from sunlight, also conversion of ADP to ATP.[3] Animals use the energy released in the breakdown of glucose and other molecules to convert ADP to ATP, which can then be used to fuel necessary growth and cell maintenance.[2]

Cellular respiration

[edit]

Catabolism

[edit]

The ten-stepcatabolic pathway ofglycolysis is the initial phase of free-energy release in the breakdown ofglucose and can be split into two phases, the preparatory phase and payoff phase. ADP andphosphate are needed as precursors to synthesize ATP in the payoff reactions of theTCA cycle andoxidative phosphorylation mechanism.[4] During the payoff phase of glycolysis, the enzymes phosphoglycerate kinase and pyruvate kinase facilitate the addition of a phosphate group to ADP by way ofsubstrate-level phosphorylation.[5]

Glycolysis overview

Glycolysis

[edit]
Main article:glycolysis

Glycolysis is performed by all living organisms and consists of 10 steps. The net reaction for the overall process ofglycolysis is:[6]

Glucose + 2 NAD+ + 2 Pi + 2 ADP → 2 pyruvate + 2 ATP + 2 NADH + 2 H2O

Steps 1 and 3 require the input of energy derived from the hydrolysis of ATP to ADP and Pi (inorganic phosphate), whereas steps 7 and 10 require the input of ADP, each yielding ATP.[7] Theenzymes necessary to break down glucose are found in thecytoplasm, the viscous fluid that fills living cells, where the glycolytic reactions take place.[1]

Citric acid cycle

[edit]
Main article:citric acid cycle

Thecitric acid cycle, also known as the Krebs cycle or the TCA (tricarboxylic acid) cycle is an 8-step process that takes the pyruvate generated by glycolysis and generates 4 NADH, FADH2, and GTP, which is further converted to ATP.[8] It is only in step 5, where GTP is generated, by succinyl-CoA synthetase, and then converted to ATP, that ADP is used (GTP + ADP → GDP + ATP).[9]

Oxidative phosphorylation

[edit]
Main article:oxidative phosphorylation

Oxidative phosphorylation produces 26 of the 30 equivalents of ATP generated in cellular respiration by transferring electrons from NADH or FADH2 toO2 through electron carriers.[10] The energy released when electrons are passed from higher-energy NADH or FADH2 to the lower-energy O2 is required to phosphorylate ADP and once again generate ATP.[11] It is this energy coupling and phosphorylation of ADP to ATP that gives the electron transport chain the name oxidative phosphorylation.[1]

ATP-Synthase

Mitochondrial ATP synthase complex

[edit]
Main article:ATP synthase

During the initial phases ofglycolysis and theTCA cycle,cofactors such asNAD+ donate and accept electrons[12] that aid in theelectron transport chain's ability to produce a proton gradient across the inner mitochondrial membrane.[13] The ATP synthase complex exists within the mitochondrial membrane (FO portion) and protrudes into the matrix (F1 portion). The energy derived as a result of the chemical gradient is then used to synthesize ATP by coupling the reaction of inorganic phosphate to ADP in the active site of theATP synthase enzyme; the equation for this can be written as ADP + Pi → ATP.[citation needed]

Blood platelet activation

[edit]

Under normal conditions, small disk-shapeplatelets circulate in the blood freely and without interaction with one another. ADP is stored indense bodies insidebloodplatelets and is released upon platelet activation. ADP interacts with a family of ADP receptors found on platelets (P2Y1,P2Y12, and P2X1), which leads to platelet activation.[14]

  • P2Y1 receptors initiate platelet aggregation and shape change as a result of interactions with ADP.
  • P2Y12 receptors further amplify the response to ADP and draw forth the completion of aggregation.

ADP in the blood is converted toadenosine by the action ofecto-ADPases, inhibiting further platelet activation viaadenosine receptors.[citation needed]

See also

[edit]

References

[edit]
  1. ^abcdeCox, Michael; Nelson, David R.; Lehninger, Albert L (2008).Lehninger principles of biochemistry. San Francisco: W.H. Freeman.ISBN 978-0-7167-7108-1.
  2. ^abcNave, C.R. (2005)."Adenosine Triphosphate".Hyper Physics [serial on the Internet]. Georgia State University.
  3. ^abFarabee, M.J. (2002)."The Nature of ATP".ATP and Biological Energy [serial on the Internet]. Archived fromthe original on 2007-12-01.
  4. ^Jensen TE, Richter EA (March 2012)."Regulation of glucose and glycogen metabolism during and after exercise".J. Physiol.590 (Pt 5):1069–76.doi:10.1113/jphysiol.2011.224972.PMC 3381815.PMID 22199166.
  5. ^Liapounova NA, Hampl V, Gordon PM, Sensen CW, Gedamu L, Dacks JB (December 2006)."Reconstructing the mosaic glycolytic pathway of the anaerobic eukaryote Monocercomonoides".Eukaryotic Cell.5 (12):2138–46.doi:10.1128/EC.00258-06.PMC 1694820.PMID 17071828.
  6. ^Medh, J.D."Glycolysis"(PDF). CSUN.Edu.Archived(PDF) from the original on 2022-10-09. Retrieved3 April 2013.
  7. ^Bailey, Regina."10 Steps of Glycolysis". Archived fromthe original on 2013-05-15. Retrieved2013-05-10.
  8. ^"Citric Acid Cycle"(PDF). Takusagawa’s Note. Archived fromthe original(PDF) on 24 March 2012. Retrieved4 April 2013.
  9. ^"Biochemistry"(PDF). UCCS.edu. Archived fromthe original(PDF) on 2013-02-28.
  10. ^"Oxidative phosphorylation". W H Freeman, 2002. Archived fromthe original on October 24, 2017. Retrieved4 April 2013.
  11. ^Medh, J. D."Electron Transport Chain (Overview)"(PDF). CSUN.edu.Archived(PDF) from the original on 2022-10-09. Retrieved4 April 2013.
  12. ^Belenky P, Bogan KL, Brenner C (January 2007). "NAD+ metabolism in health and disease".Trends Biochem. Sci.32 (1):12–9.doi:10.1016/j.tibs.2006.11.006.PMID 17161604.
  13. ^Murray, Robert F. (2003).Harper's illustrated biochemistry. New York: McGraw-Hill.ISBN 0-07-121766-5.
  14. ^Murugappa S, Kunapuli SP (2006)."The role of ADP receptors in platelet function".Front. Biosci.11:1977–86.doi:10.2741/1939.PMID 16368572.
Nucleic acid constituents
Nucleobase
Nucleoside
Ribonucleoside
Deoxyribonucleoside
Nucleotide
(Nucleoside monophosphate)
Ribonucleotide
Deoxyribonucleotide
Cyclic nucleotide
Nucleoside diphosphate
Nucleoside triphosphate
Amino acid-derived
Major excitatory /
inhibitory systems
Glutamate system
GABA system
Glycine system
GHB system
Biogenic amines
Monoamines
Trace amines
Others
Neuropeptides
Lipid-derived
Endocannabinoids
Neurosteroids
Nucleobase-derived
Nucleosides
Adenosine system
Vitamin-derived
Miscellaneous
Cholinergic system
Gasotransmitters
Candidates
Receptor
(ligands)
P0 (adenine)
P1
(adenosine)
P2
(nucleotide)
P2X
(ATPTooltip Adenosine triphosphate)
P2Y
Transporter
(blockers)
CNTsTooltip Concentrative nucleoside transporters
ENTsTooltip Equilibrative nucleoside transporters
PMATTooltip Plasma membrane monoamine transporter
Enzyme
(inhibitors)
XOTooltip Xanthine oxidase
Others
Others
Authority control databases: NationalEdit this at Wikidata
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