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ATF4

From Wikipedia, the free encyclopedia
Mammalian protein found in Homo sapiens

ATF4
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1CI6

Identifiers
AliasesATF4, CREB-2, CREB2, TAXREB67, TXREB, activating transcription factor 4
External IDsOMIM:604064;MGI:88096;HomoloGene:1266;GeneCards:ATF4;OMA:ATF4 - orthologs
Gene location (Human)
Chromosome 22 (human)
Chr.Chromosome 22 (human)[1]
Chromosome 22 (human)
Genomic location for ATF4
Genomic location for ATF4
Band22q13.1Start39,519,695bp[1]
End39,522,683bp[1]
Gene location (Mouse)
Chromosome 15 (mouse)
Chr.Chromosome 15 (mouse)[2]
Chromosome 15 (mouse)
Genomic location for ATF4
Genomic location for ATF4
Band15 E1|15 37.85 cMStart80,139,385bp[2]
End80,141,742bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • muscle layer of sigmoid colon

  • popliteal artery

  • tibial arteries

  • body of stomach

  • subcutaneous adipose tissue

  • fundus

  • right coronary artery

  • body of pancreas

  • left coronary artery

  • Descending thoracic aorta
Top expressed in
  • ankle joint

  • calvaria

  • fetal liver hematopoietic progenitor cell

  • granulocyte

  • lacrimal gland

  • plantaris muscle

  • temporal muscle

  • islet of Langerhans

  • triceps brachii muscle

  • muscle of thigh
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

468

11911

Ensembl

ENSG00000128272

ENSMUSG00000042406

UniProt

P18848

Q06507

RefSeq (mRNA)

NM_182810
NM_001675

NM_001287180
NM_009716

RefSeq (protein)

NP_001666
NP_877962

NP_001274109
NP_033846

Location (UCSC)Chr 22: 39.52 – 39.52 MbChr 15: 80.14 – 80.14 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Activating transcription factor 4 (tax-responsive enhancer element B67), also known asATF4, is aprotein that in humans is encoded by theATF4gene.[5][6]

Function

[edit]

This gene encodes atranscription factor that was originally identified as a widely expressed mammalian DNA binding protein that could bind a tax-responsive enhancer element in the LTR of HTLV-1. The encoded protein was also isolated and characterized as the cAMP-response element binding protein 2 (CREB-2).

The protein encoded by this gene belongs to a family of DNA-binding proteins that includes theAP-1 family of transcription factors, cAMP-response element binding proteins (CREBs) and CREB-like proteins. These transcription factors share aleucine zipper region that is involved in protein–protein interactions, locatedC-terminal to a stretch of basic amino acids that functions as aDNA-binding domain. Two alternative transcripts encoding the same protein have been described. Twopseudogenes are located on the X chromosome at q28 in a region containing a large inverted duplication.[7]

ATF4 transcription factor is also known to play role inosteoblast differentiation along withRUNX2 andosterix.[8] Terminal osteoblast differentiation, represented by matrix mineralization, is significantly inhibited by the inactivation ofJNK. JNK inactivation downregulates expression of ATF-4 and, subsequently, matrix mineralization.[9] IMPACT protein regulates ATF4 in C. elegans to promote lifespan.[10]

ATF4 is also involved in thecannabinoidΔ9-tetrahydrocannabinol–inducedapoptosis incancer cells, by the proapoptotic role of the stress protein p8 via its upregulation of theendoplasmic reticulum stress-related genes ATF4,CHOP, and TRB3.[11][12]

Translation

[edit]

The translation of ATF4 is dependent onupstream open reading frames located in the5'UTR.[13] The location of the second uORF, aptly named uORF2, overlaps with theATF4 open-reading frame. During normal conditions, the uORF1 is translated, and then translation of uORF2 occurs only after eIF2-TC has been reacquired. Translation of the uORF2 requires that the ribosomes pass by theATF4 ORF, whose start codon is located within uORF2. This leads to its repression. However, during stress conditions, the40S ribosome will bypass uORF2 because of a decrease in concentration of eIF2-TC, which means the ribosome does not acquire one in time to translate uORF2. InsteadATF4 is translated.[13]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000128272Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000042406Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Tsujimoto A, Nyunoya H, Morita T, Sato T, Shimotohno K (March 1991)."Isolation of cDNAs for DNA-binding proteins which specifically bind to a tax-responsive enhancer element in the long terminal repeat of human T-cell leukemia virus type I".Journal of Virology.65 (3):1420–1426.doi:10.1128/JVI.65.3.1420-1426.1991.PMC 239921.PMID 1847461.
  6. ^Karpinski BA, Morle GD, Huggenvik J, Uhler MD, Leiden JM (June 1992)."Molecular cloning of human CREB-2: an ATF/CREB transcription factor that can negatively regulate transcription from the cAMP response element".Proceedings of the National Academy of Sciences of the United States of America.89 (11):4820–4824.Bibcode:1992PNAS...89.4820K.doi:10.1073/pnas.89.11.4820.PMC 49179.PMID 1534408.
  7. ^"Entrez Gene: ATF4 activating transcription factor 4 (tax-responsive enhancer element B67)".
  8. ^Franceschi RT, Ge C, Xiao G, Roca H, Jiang D (2009)."Transcriptional regulation of osteoblasts".Cells Tissues Organs.189 (1–4):144–152.doi:10.1159/000151747.PMC 3512205.PMID 18728356.
  9. ^Matsuguchi T, Chiba N, Bandow K, Kakimoto K, Masuda A, Ohnishi T (March 2009). "JNK activity is essential for Atf4 expression and late-stage osteoblast differentiation".Journal of Bone and Mineral Research.24 (3):398–410.doi:10.1359/jbmr.081107.PMID 19016586.S2CID 13111270.
  10. ^Ferraz RC, Camara H, De-Souza EA, Pinto S, Pinca AP, Silva RC, et al. (October 2016)."IMPACT is a GCN2 inhibitor that limits lifespan in Caenorhabditis elegans".BMC Biology.14 (1) 87.doi:10.1186/s12915-016-0301-2.PMC 5054600.PMID 27717342.
  11. ^Carracedo A, Gironella M, Lorente M, Garcia S, Guzmán M, Velasco G, Iovanna JL (July 2006)."Cannabinoids induce apoptosis of pancreatic tumor cells via endoplasmic reticulum stress-related genes".Cancer Research.66 (13):6748–6755.doi:10.1158/0008-5472.CAN-06-0169.PMID 16818650.
  12. ^Carracedo A, Lorente M, Egia A, Blázquez C, García S, Giroux V, et al. (April 2006)."The stress-regulated protein p8 mediates cannabinoid-induced apoptosis of tumor cells".Cancer Cell.9 (4):301–312.doi:10.1016/j.ccr.2006.03.005.PMID 16616335.
  13. ^abSomers J, Pöyry T, Willis AE (August 2013)."A perspective on mammalian upstream open reading frame function".The International Journal of Biochemistry & Cell Biology.45 (8):1690–1700.doi:10.1016/j.biocel.2013.04.020.PMC 7172355.PMID 23624144.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.


PDB gallery
  • 1ci6: TRANSCRIPTION FACTOR ATF4-C/EBP BETA BZIP HETERODIMER
    1ci6: TRANSCRIPTION FACTOR ATF4-C/EBP BETA BZIP HETERODIMER
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
Activates
Runx2, nrf1, Bip
Inhibits
ATF4, CHOP
Is activated by
not, PERK
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