| Tournament details | |
|---|---|
| Country | Bosnia and Herzegovina |
| Final positions | |
| Champions | Bosna Visoko |
| Runners-up | Sarajevo |
1998–99Bosnia and Herzegovina Football Cup was the fifth season of theBosnia and Herzegovina's annualfootball cup. The Cup was won byBosna Visoko who defeatedSarajevo in the final.
Unlike the previous season in this edition there was no agreement betweenFootball Federation of Bosnia and Herzegovina and the Football Federation of Herzeg-Bosnia so that each one organized its own competition.
This was the only one to be recognized by UEFA.
| Team 1 | Agg.Tooltip Aggregate score | Team 2 | 1st leg | 2nd leg |
|---|---|---|---|---|
| Travnik | 2–4 | Bosna Visoko | 2–1 | 0–3 |
| Zmaj od Bosne | 0–3 | Sarajevo | 0–0 | 0–3 |
| Željezničar | 0–0 (4–3p) | Čelik Zenica | 0–0 | 0–0 |
| Sloboda Tuzla | 1–1 (4–2p) | Zenica | 1–0 | 0–1 |
| Team 1 | Agg.Tooltip Aggregate score | Team 2 | 1st leg | 2nd leg |
|---|---|---|---|---|
| Sarajevo | 1–1 (3–1p) | Željezničar | 1–0 | 0–1 |
| Sloboda Tuzla | 3–3 (3–4p) | Bosna Visoko | 3–0 | 0–3 |
| Sarajevo | 0–1 (a.e.t.) | Bosna Visoko |
|---|---|---|
| Report | Džafić 114' |