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Nucleoside

From Wikipedia, the free encyclopedia
Any of several glycosylamines comprising a nucleobase and a sugar molecule
Not to be confused withnucleotide ornucleobase.
deoxyadenosine
deoxyadenosine
adenosine
adenosine
Two corresponding nucleosides, thedeoxyribonucleoside, deoxyadenosine, and theribonucleoside, adenosine. The line-angle molecular representation implies carbon atoms at each angle, each with enough hydrogen atoms to fill its four-bond valency.

Nucleosides areglycosylamines that can be thought of asnucleotides without aphosphate group. A nucleoside consists simply of anucleobase (also termed a nitrogenous base) and a five-carbon sugar (ribose or 2'-deoxyribose) whereas a nucleotide is composed of a nucleobase, a five-carbon sugar, and one or more phosphate groups. In a nucleoside, theanomeric carbon is linked through a glycosidic bond to the N9 of apurine or the N1 of apyrimidine. Nucleotides are the molecular building blocks ofDNA andRNA.

List of nucleosides and corresponding nucleobases

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This list does not includemodified nucleobases and the corresponding nucleosides

Each chemical has a short symbol, useful when the chemical family is clear from the context, and a longer symbol, if further disambiguation is needed. For example, long nucleobase sequences in genomes are usually described by CATG symbols, not Cyt-Ade-Thy-Gua (seeNucleic acid sequence § Notation).

Nitrogenous baseRibonucleosideDeoxyribonucleoside
Chemical structure of adenine
adenine
symbolA orAde
Chemical structure of adenosine
adenosine
symbolA orAdo
Chemical structure of deoxyadenosine
deoxyadenosine
symboldA ordAdo
Chemical structure of guanine
guanine
symbolG orGua
Chemical structure of guanosine
guanosine
symbolG orGuo
Chemical structure of deoxyguanosine
deoxyguanosine
symboldG ordGuo
Chemical structure of thymine
thymine
(5-methyluracil)
symbolT orThy
Chemical structure of 5-methyluridine
5-methyluridine
(ribothymidine)
symbolm⁵U
Chemical structure of thymidine
thymidine
(deoxythymidine)
symboldT ordThd
(dated:T orThd)
Chemical structure of uracil
uracil
symbolU orUra
Chemical structure of uridine
uridine
symbolU orUrd
Chemical structure of deoxyuridine
deoxyuridine
symboldU ordUrd
Chemical structure of cytosine
cytosine
symbolC orCyt
Chemical structure of cytidine
cytidine
symbolC orCyd
Chemical structure of deoxycytidine
deoxycytidine
symboldC ordCyd

Sources

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Nucleosides can be produced from nucleotidesde novo, particularly in the liver, but they are more abundantly supplied via ingestion and digestion of nucleic acids in the diet, wherebynucleotidases break downnucleotides (such as thethymidine monophosphate) intonucleosides (such asthymidine) and phosphate. The nucleosides, in turn, are subsequently broken down in thelumen of the digestive system bynucleosidases into nucleobases and ribose or deoxyribose. In addition, nucleotides can be broken down inside the cell intonitrogenous bases, andribose-1-phosphate ordeoxyribose-1-phosphate.

Use in medicine and technology

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In medicine severalnucleoside analogues are used as antiviral or anticancer agents.[1][2][3][4] The viral polymerase incorporates these compounds with non-canonical bases. These compounds are activated in the cells by being converted into nucleotides. They are administered as nucleosides since charged nucleotides cannot easily cross cell membranes.

In molecular biology, severalanalogues of the sugar backbone exist. Due to the low stability of RNA, which is prone to hydrolysis, several more stable alternative nucleoside/nucleotide analogues that correctly bind to RNA are used. This is achieved by using a different backbone sugar. These analogues includelocked nucleic acids (LNA),morpholinos andpeptide nucleic acids (PNA).

In sequencing,dideoxynucleotides are used. These nucleotides possess the non-canonical sugar dideoxyribose, which lacks 3' hydroxyl group (which accepts the phosphate). DNA polymerases cannot distinguish between these and regular deoxyribonucleotides, but when incorporated a dideoxynucleotide cannot bond with the next base and the chain is terminated.

Prebiotic synthesis of ribonucleosides

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In order to understand howlife arose, knowledge is required of the chemical pathways that permit formation of the key building blocks of life under plausibleprebiotic conditions. According to theRNA world hypothesis free-floating ribonucleosides and ribonucleotides were present in the primitive soup. Molecules as complex as RNA must have arisen from small molecules whose reactivity was governed by physico-chemical processes. RNA is composed ofpurine andpyrimidine nucleotides, both of which are necessary for reliable information transfer, and thus Darwinian natural selection andevolution. Nam et al.[5] demonstrated the direct condensation of nucleobases with ribose to give ribonucleosides in aqueous microdroplets, a key step leading to RNA formation. Also, a plausible prebiotic process for synthesizing pyrimidine and purine ribonucleosides and ribonucleotides using wet-dry cycles was presented by Becker et al.[6]

See also

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References

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  1. ^Ramesh, Deepthi; Vijayakumar, Balaji Gowrivel; Kannan, Tharanikkarasu (December 2020). "Therapeutic potential of uracil and its derivatives in countering pathogenic and physiological disorders".European Journal of Medicinal Chemistry.207 112801.doi:10.1016/j.ejmech.2020.112801.PMID 32927231.S2CID 221724578.
  2. ^Galmarini, Carlos M.; MacKey, John R.; Dumontet, Charles (2002). "Nucleoside analogues and nucleobases in cancer treatment".The Lancet Oncology.3 (7):415–424.doi:10.1016/S1470-2045(02)00788-X.PMID 12142171.
  3. ^Jordheim, Lars Petter; Durantel, David; Zoulim, Fabien; Dumontet, Charles (2013). "Advances in the development of nucleoside and nucleotide analogues for cancer and viral diseases".Nature Reviews Drug Discovery.12 (6):447–464.doi:10.1038/nrd4010.PMID 23722347.S2CID 39842610.
  4. ^Ramesh, Deepthi; Vijayakumar, Balaji Gowrivel; Kannan, Tharanikkarasu (12 February 2021)."Advances in Nucleoside and Nucleotide Analogues in Tackling Human Immunodeficiency Virus and Hepatitis Virus Infections".ChemMedChem.16 (9):1403–1419.doi:10.1002/cmdc.202000849.PMID 33427377.S2CID 231576801. Archived fromthe original on 14 December 2021. Retrieved13 March 2021.
  5. ^Nam, Inho; Nam, Hong Gil; Zare, Richard N. (2018-01-02)."Abiotic synthesis of purine and pyrimidine ribonucleosides in aqueous microdroplets".Proceedings of the National Academy of Sciences of the United States of America.115 (1):36–40.Bibcode:2018PNAS..115...36N.doi:10.1073/pnas.1718559115.PMC 5776833.PMID 29255025.
  6. ^Becker, Sidney; Feldmann, Jonas; Wiedemann, Stefan; Okamura, Hidenori; Schneider, Christina; Iwan, Katharina; Crisp, Antony; Rossa, Martin; Amatov, Tynchtyk; Carell, Thomas (2019-10-04)."Unified prebiotically plausible synthesis of pyrimidine and purine RNA ribonucleotides"(PDF).Science.366 (6461):76–82.Bibcode:2019Sci...366...76B.doi:10.1126/science.aax2747.PMID 31604305.S2CID 203719976.Archived(PDF) from the original on 2022-10-09.

External links

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Nucleic acid constituents
Nucleobase
Nucleoside
Ribonucleoside
Deoxyribonucleoside
Nucleotide
(Nucleoside monophosphate)
Ribonucleotide
Deoxyribonucleotide
Cyclic nucleotide
Nucleoside diphosphate
Nucleoside triphosphate
Receptor
(ligands)
P0 (adenine)
P1
(adenosine)
P2
(nucleotide)
P2X
(ATPTooltip Adenosine triphosphate)
P2Y
Transporter
(blockers)
CNTsTooltip Concentrative nucleoside transporters
ENTsTooltip Equilibrative nucleoside transporters
PMATTooltip Plasma membrane monoamine transporter
Enzyme
(inhibitors)
XOTooltip Xanthine oxidase
Others
Others
International
National
Other
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