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List of sequenced bacterial genomes

From Wikipedia, the free encyclopedia

Thislist of sequenced eubacterial genomes contains most of theeubacteria known to have publicly available completegenome sequences. Most of these sequences have been placed in theInternational Nucleotide Sequence Database Collaboration, a public database which can be searched[1] on theweb. A few of the listed genomes may not be in theINSDC database, but in other public databases[verification needed].

Genomes listed as "Unpublished" are in a database, but not in thepeer-reviewed scientific literature.

For the genomes of archaea seelist of sequenced archaeal genomes.

For the genomes of organelles with a bacterial origin, seelist of sequenced mitochondrial genomes andlist of sequenced plastomes

Abditibacteriota

[edit]
SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Abditibacterium utsteinenseLMG 29911Abditibacteriota3,606,3303,2402018[2]NZ_NIGF00000000.1

Actinomycetota

[edit]
SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Corynebacterium diphtheriaeC7 (beta)Actinobacteridae2,499,189UnpublishedCP003210
Corynebacterium diphtheriaePW8Actinobacteridae2,530,683UnpublishedCP003216
Bifidobacterium longumNCC2705Actinobacteria2,256,6401,7272002[3]
Corynebacterium diphtheriaeNCTC13129Actinobacteria2,488,6352,3202003[4]
Corynebacterium efficiensYS314Actinobacteria3,147,0902,9422003[5]
Corynebacterium glutamicumATCC13032Actinobacteria3,309,4013,099Unpublished[1]
Corynebacterium jeikeiumK411Actinobacteria2,462,4992,1042005[6]
Frankia speciesCcI3Actinobacteria5,433,6284,499Unpublished[1]
Mycobacterium aviumk10Actinobacteria4,829,7814,3502005[7]
Mycobacterium bovisAF212297Actinobacteria4,345,4923,9532003[8]
Mycobacterium lepraeTNActinobacteria3,268,2032,7202001[9]
Mycobacterium tuberculosisCDC1551Actinobacteria4,403,8374,189Unpublished[1]
Mycobacterium tuberculosisH37RvActinobacteria4,411,5323,9991998[10]
Nocardia farcinicaIFM10152Actinobacteria6,021,2255,6832004[11]
Streptomyces avermitilisMA4680Actinobacteria9,025,6087,5772001[12]
Streptomyces coelicolorA3Actinobacteria8,667,5077,8251996[13]
Symbiobacterium thermophilumStrainActinobacteria3,566,1353,3372004[14]
Thermobifida fuscaYXActinobacteria3,642,2493,110Unpublished[1]

Aquificota

[edit]
SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Aquifex aeolicusVF5Aquificae1,551,3351,5221998[15]ChromosomeNC_000918

Plasmid ece1NC_001880

Armatimonadota

[edit]

Bacteroidota/Chlorobiota group

[edit]
SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
BacteroidesfragilisNCTC9343Bacteroidota5,205,1404,2602005[16]ChromosomeCR626927

Plasmid pBF9343CR626928

BacteroidesfragilisYCH46Bacteroidota5,277,2744,5782004[17]ChromosomeAP006841

Plasmid pBFY46AP006842

BacteroidesthetaiotaomicronVPI-5482Bacteroidota6,260,3614,7782003[18]ChromosomeAE015928

Plasmid p5482AY171301

Candidatus Amoebophilus asiaticus5a2Bacteroidota1,884,3642010[19]CP001102
ChlorobaculumparvumNCIB 8327Chlorobiota2,289,249DOE Joint Genome InstituteCP001099
ChlorobiumchlorochromatiiCaD3Chlorobiota2,572,0792,002DOE Joint Genome InstituteCP000108
ChlorobiumferrooxidansDSM 13031ChlorobiotaDOE Joint Genome InstituteAASE00000000
ChlorobiumlimicolaDSM 245Chlorobiota2,763,181DOE Joint Genome InstituteNC_010803
ChlorobiumphaeobacteroidesBS1Chlorobiota2,736,403DOE Joint Genome InstituteNC_010831
ChlorobiumphaeobacteroidesDSM 266Chlorobiota3,133,902DOE Joint Genome InstituteNC_008639
ChlorobiumphaeovibrioidesDSM 265Chlorobiota1,966,858DOE Joint Genome InstituteNC_009337
ChlorobiumtepidumTLSChlorobiota2,154,9462,2552002[20]AE006470
ChloroherpetonthalassiumATCC 35110Chlorobiota3,293,456DOE Joint Genome InstituteCP001100
CytophagahutchinsoniiATCC 33406Chlorobiota4,433,2182007[21]CP000383
HaliscomenobacterhydrossisDSM 1100Bacteroidota8,371,6862011[22]ChromosomeCP002691

Plasmid pHALHY01CP002692
Plasmid pHALHY02CP002693
Plasmid pHALHY03CP002694

IgnavibacteriumalbumJCM 16511Ignavibacteriota3,658,997University of CopenhagenCP003418
Pelodictyonluteolum (Chlorobium luteolum)DSM 273Chlorobiota2,364,8422,083DOE Joint Genome InstituteCP000096
PelodictyonphaeoclathratiformeBU-1Chlorobiota3,018,238DOE Joint Genome InstituteCP001110
PorphyromonasgingivalisATCC 33277Bacteroidota2,354,8862008[23]NC_010729
PorphyromonasgingivalisW83Bacteroidota2,343,4761,9092003[24]NC_002950
ProsthecochlorisaestuariiDSM 271Chlorobiota2,512,923DOE Joint Genome InstituteChromosomeCP001108

Plasmid pPAES01CP001109

SalinibacterruberDSM 13855Bacteroidota3,551,8232,801[25]NC_007677
SalinibacterruberM8Bacteroidota3,619,447[26]ChromosomeFP565814

Plasmid pSR11FP565810
Plasmid pSR56FP565811
Plasmid pSR61FP565812
Plasmid pSR84NC_014157

Saprospiragrandisstr. LewinBacteroidota4,345,237University of Hawaii at ManoaChromosomeCP002831

PlasmidCP002832

Caldisericota

[edit]

Chlamydiota/Verrucomicrobiota group

[edit]
SpeciesStrainTypeBase PairsGenesReference
Akkermansia muciniphilaATCC BAA-835Verrucomicrobiota2,664,1022,176[27]
Akkermansia muciniphilaUrmiteVerrucomicrobiota2,664,7142,192[citation needed]
ChlamydiamuridarumNiggChlamydiota1,072,950904[28]
ChlamydiatrachomatisAHAR13Chlamydiota1,044,459911[29]
ChlamydiatrachomatisDUWChlamydiota1,042,519894[30]
ChlamydophilaabortusS26-3Chlamydiota1,144,377961[31]
ChlamydophilacaviaeGPICChlamydiota1,173,390998[32]
ChlamydophilafelisFeC56Chlamydiota1,166,2391,005[33]
ChlamydophilapneumoniaeAR39Chlamydiota1,229,8531,110[28]
ChlamydophilapneumoniaeCWL029Chlamydiota1,230,2301,052[34]
ChlamydophilapneumoniaeJ138Chlamydiota1,226,5651,069[35]
ChlamydophilapneumoniaeTW183Chlamydiota1,225,9351,113ALTANA Pharma
ParachlamydiaspeciesUWE25Chlamydiota2,414,4652,031[36]

Chloroflexota

[edit]
SpeciesStrainTypeBase PairsGenesReference
Dehalococcoides mccartyi195Dehalococcoidetes1,469,7201,580[37]
Dehalococcoides mccartyiCBDB1Dehalococcoidetes1,395,5021,458[38]
Dehalococcoides mccartyiDCMB5Dehalococcoidetes1,431,9021,526[39]
Dehalococcoides mccartyiBTF08Dehalococcoidetes1,452,3351,580[39]

Chrysiogenota

[edit]

Cyanobacteria

[edit]
SpeciesStrainTypeBase PairsGenesReference
AnabaenanostocPCC7120Nostocales6,413,7715,368[40]
AnabaenavariabilisATCC29413Nostocales6,365,7275,039DOE Joint Genome Institute
Cyanobacteria bacteriumYellowstoneAChroococcales2,932,7662,760[41]
Cyanobacteria bacteriumYellowstoneBChroococcales3,046,6822,862[41]
Gloeobacter violaceusPCC7421Gloeobacteria4,659,0194,430[42]
Prochlorococcus marinusMED4Prochlorales1,657,9901,716[43]
Prochlorococcus marinusMIT9312Prochlorales1,709,2041,809Unpublished[1]
Prochlorococcus marinusMIT9313Prochlorales2,410,8732,273[43]
Prochlorococcus marinusNATL2AProchlorales1,842,8991,890Unpublished[1]
Prochlorococcus marinusSS120Prochlorales1,751,0801,882[44]
SynechococcuselongatusPCC6301Chroococcales2,696,2552,525Unpublished[1]
SynechococcuselongatusPCC7942Chroococcales2,695,9032,611Unpublished[1]
Synechococcus speciesWH8102Chroococcales2,434,4282,526[45]
Synechococcus speciesCC9605Chroococcales2,510,6592,638Unpublished[1]
Synechococcus speciesCC9902Chroococcales2,234,8282,304Unpublished[1]
Synechocystis speciesPCC6803Chroococcales3,573,4703,167[46]
Thermosynechococcuselongatusbp1Chroococcales2,593,8572,475Unpublished[1]

Deferribacterota

[edit]
SpeciesStrainTypeBase PairsGenesReference
Geovibrio sp.Deferribacterota2,971,6582,415DOE Joint Genome Institute
Mucispirillum schaedleriASF457Deferribacterota2,319,1802,144Broad Institute
Denitrovibrio acetiphilusDSM 12809Deferribacterota3,222,0773,068[47]
Calditerrivibrio nitroreducensDSM 19672Deferribacterota2,157,8352,117[48]
Deferribacter desulfuricansSSM1Deferribacterota2,234,3892,184[49]
Flexistipes sinusarabiciDSM 4947Deferribacterota2,526,5902,397[50]

Deinococcota

[edit]
SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
DeinococcusdesertiVCD115Deinococcales2,819,842[51]ChromosomeNC_012526

Plasmid 1NC_012528
Plasmid 2NC_012529
Plasmid 3NC_012528

DeinococcusgeothermalisDSM 11300Deinococcales2,467,2052,335DOE Joint Genome InstituteChromosomeCP000359

Plasmid pDGEO01CP000358
Plasmid pDGEO02CP000856

DeinococcusgobiensisI-0Deinococcales3,137,147[52]ChromosomeCP002191

Plasmid P1CP002192
Plasmid P2CP002193
Plasmid P3CP002194
Plasmid P4CP002195
Plasmid P5CP002196
Plasmid P6CP002197

DeinococcusmaricopensisDSM 21211Deinococcales3,498,530US DOE Joint Genome InstituteCP002454
DeinococcusproteolyticusMRPDeinococcales2,147,060US DOE Joint Genome InstituteChromosomeCP002536

Plasmid pDEIPR01CP002537
Plasmid pDEIPR02CP002538
Plasmid pDEIPR03CP002539
Plasmid pDEIPR04CP002540

Deinococcus radioduransR1DeinococcalesChromosome 1: 2,648,638

Chromosome 2: 412,348

Chromosome 1: 2,579

Chromosome 2: 357

[53]Chromosome 1NC_001263

Chromosome 2NC_001264
Plasmid CP1NC_000959
Plasmid MP1NC_000958

MarinithermushydrothermalisDSM 14884Thermales2,269,167DOE Joint Genome InstituteCP002630
MeiothermusruberDSM 1279Thermales3,097,457DOE Joint Genome InstituteCP001743
MeiothermussilvanusDSM 9946Thermales3,249,394[54]ChromosomeCP002042

Plasmid pMESIL01CP002043
Plasmid pMESIL02CP002044

OceanithermusprofundusDSM 14977Thermales2,303,940DOE Joint Genome InstituteChromosomeCP002361

PlasmidpOCEPR01

ThermusscotoductusSA-01Thermales2,346,803[55]ChromosomeCP001962

Plasmid pTSC8CP001963

Thermus speciesCCB_US3_UF1Thermales2,243,772Universiti Sains MalaysiaChromosomeCP003126

Plasmid pTCCB09CP003127

Thermus thermophilusHB27Thermales1,894,8771,982[56]ChromosomeAE017221

Plasmid pTT27AE017222

Thermus thermophilusHB8Thermales1,849,7421,973Nara Institute of Science and TechnologyChromosomeNC_006461

Plasmid pTT27NC_006462
Plasmid pTT8NC_006463

Thermus thermophilusJL-18Thermales1,902,595DOE Joint Genome InstituteChromosomeCP003252

Plasmid pTTJL1801CP003253
Plasmid pTTJL1802CP003254

Thermus thermophilusSG0.5JP17-16Thermales1,863,201DOE Joint Genome InstituteChromosomeCP002777

Plasmid pTHTHE1601CP002778

TrueperaradiovictrixDSM 17093Deinococcales3,260,398DOE Joint Genome InstituteCP002049

Dictyoglomota

[edit]

Elusimicrobiota

[edit]

Fibrobacterota/Acidobacteriota group

[edit]
SpeciesStrainTypeBase PairsGenesReference
Acidobacteria bacteriumEllin345Acidobacteriota5,650,3684,777Unpublished[1]
Leifsonia xyliCTCB07Acidobacteriota2,584,1582,030[57]
Propionibacterium acnesKPA171202Acidobacteriota2,560,2652,297[58]
Rubrobacter xylanophilusDSM9941Acidobacteriota3,225,7483,140DOE Joint Genome Institute
Tropheryma whippeliiTW08/27Acidobacteriota925,938784[59]
Tropheryma whippeliiTwistAcidobacteriota927,303808[60]

Bacillota

[edit]
SpeciesStrainTypeBase PairsGenesReference
Bacillus anthracisAmesBacilli5,227,2935,311[61]
Bacillus anthracisSterneBacilli5,228,6635,287Unpublished[1]
Bacillus cereusATCC10987Bacilli5,224,2835,603[62]
Bacillus cereusATCC14579Bacilli5,411,8095,234[63]
Bacillus cereusZKBacilli5,300,9155,134Unpublished[1]
Bacillus clausiiKSMK16Bacilli4,303,8714,108[64]
Bacillus haloduransC125Bacilli4,202,3524,066[65]
Bacillus licheniformisATCC14580Bacilli4,222,3344,152[66]
Bacillus licheniformisUnspecifiedBacilli4,222,6454,196[67]
Bacillus licheniformisDSM13Bacilli4,222,6454,196[67]
Bacillus subtilis168Bacilli4,214,6304,106[68]
Bacillus thuringiensis9727Bacilli5,237,6825,117[69]
Carboxydothermus hydrogenoformansZ2901Clostridia2,401,5202,620[70]
Clostridium acetobutylicumATCC824Clostridia3,940,8803,672[71]
Clostridioides difficileQCD-32g58Clostridia3,840,681Unpublished[1]
Clostridium perfringens13Clostridia3,031,4302,660[72]
Clostridium tetaniE88Clostridia2,799,2512,373[73]
Desulfitobacterium hafnienseY51Clostridia5,727,5345,060[74]
Enterococcus faecalisV583Bacilli3,218,0313,113[75]
Geobacillus kaustophilusHTA426Bacilli3,544,7763,498[76]
Lactobacillus acetotoleransNCFMBacilli
Lactobacillus acidophilusNCFMBacilli1,993,5641,864[77]
Lactobacillus delbrueckiibulgaricusBacilli1,864,9982,096Unpublished[1]
Lactobacillus johnsoniiNCC533Bacilli1,992,6761,821[78]
Lactobacillus plantarumWCFS1Bacilli3,308,2743,051[78]
Lactobacillus sakei23KBacilli1,884,6611,885Unpublished[1]
Lactobacillus sakeisakei23KBacilli1,884,6611,885Unpublished[1]
Lactobacillus salivariusUCC118Bacilli1,827,1111,717Unpublished[1]
Lactococcus lactisIL1403Bacilli2,365,5892,266[79]
Listeria innocuaClip11262Bacilli3,011,2082,981[80]
Listeria monocytogenesEGDBacilli2,944,5282,855[80]
Listeria monocytogenes4bBacilli2,905,1872,821[81]
Moorella thermoaceticaATCC39073Clostridia2,628,7842,465Unpublished[1]
Oceanobacillus iheyensisHTE831Bacilli3,630,5283,496[82]
Staphylococcus aureusCOLBacilli2,809,4222,673[83]
Staphylococcus aureusMRSA252Bacilli2,902,6192,744[84]
Staphylococcus aureusMSSA476Bacilli2,799,8022,619[84]
Staphylococcus aureusMu50Bacilli2,878,5292,699[85]
Staphylococcus aureusMW2Bacilli2,820,4622,632[86]
Staphylococcus aureusN315Bacilli2,814,8162,593[85]
Staphylococcus aureusNCTC8325Bacilli2,821,3612,892Unpublished[1]
Staphylococcus aureusRF122Bacilli2,742,5312,589Unpublished[1]
Staphylococcus aureusUSA300Bacilli2,872,7692,560[87]
Staphylococcus epidermidisATCC12228Bacilli2,499,2792,419Unpublished[1]
Staphylococcus epidermidisRP62ABacilli2,616,5302,494[83]
Staphylococcus haemolyticusJCSC1435Bacilli2,685,0152,678[88]
Staphylococcus saprophyticussaprophyticusBacilli2,516,5752,446[89]
Streptococcus agalactiaeA909Bacilli2,127,8391,996[90]
Streptococcus agalactiaeNEM316Bacilli2,211,4852,134[91]
Streptococcus agalactiae2603 V/RBacilli2,160,2672,124[92]
Streptococcus mutansUAB159Bacilli2,030,9211,960[93]
Streptococcus pneumoniaeR6Bacilli2,038,6152,043[94]
Streptococcus pneumoniaeTIGR4Bacilli2,160,8422,125[95]
Streptococcus pyogenesM5ManfredoBacilli1,841,271Unpublished[1]
Streptococcus pyogenesMGAS10270Bacilli1,928,2521,987[96]
Streptococcus pyogenesMGAS10394Bacilli1,899,8771,886[97]
Streptococcus pyogenesMGAS10750Bacilli1,937,1111,979[96]
Streptococcus pyogenesMGAS2096Bacilli1,860,3551,898[96]
Streptococcus pyogenesMGAS315Bacilli1,900,5211,865[98]
Streptococcus pyogenesMGAS5005Bacilli1,838,5541,865[99]
Streptococcus pyogenesMGAS6180Bacilli1,897,5731,894[100]
Streptococcus pyogenesMGAS8232Bacilli1,895,0171,845[101]
Streptococcus pyogenesMGAS9429Bacilli1,836,4671,877[96]
Streptococcus pyogenesSF370Bacilli1,852,4411,696[102]
Streptococcus pyogenesSSI1Bacilli1,894,2751,861[103]
Streptococcus thermophilusCNRZ1066Bacilli1,796,2261,915[104]
Streptococcus thermophilusLMG18311Bacilli1,796,8461,889[104]
Thermoanaerobacter tengcongensisMB4TClostridia2,689,4452,588Unpublished[1]

Fusobacteriota

[edit]
SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Fusobacterium nucleatumATCC25586Fusobacteria2,174,5002,067[105]
Fusobacterium sp.11_3_2FusobacteriaUnpublishedACUO00000000
Fusobacterium sp.21_1AFusobacteriaUnpublishedADEE00000000

Gemmatimonadota

[edit]

Nitrospirota

[edit]

Planctomycetota

[edit]
SpeciesStrainTypeBase PairsGenesReference
Rhodopirellula balticastrain1Planctomycetes Planctomycetacia7,145,5767,325Unpublished[1]

Pseudomonadota

[edit]

Alphaproteobacteria

[edit]
SpeciesStrainTypeBase PairsGenesReference
Agrobacterium tumefaciensC58Alphaproteobacteria2,841,5812,722[106]
Anaplasma marginaleStMariesAlphaproteobacteria1,197,687949[107]
Anaplasma phagocytophilumHZAlphaproteobacteria1,471,2821,264[108]
Bartonella henselaeHouston-1Alphaproteobacteria1,931,0471,612[109]
Bartonella quintanaToulouseAlphaproteobacteria1,581,3841,308[109]
Bradyrhizobium japonicumUSDA110Alphaproteobacteria9,105,8288,317[110]
Brucella abortus2308 (chromosome I)Alphaproteobacteria1,156,9481,164[111]
2308 (chromosome II)Alphaproteobacteria2,121,3592,186[111]
Brucella abortus9-941 (chromosome I)Alphaproteobacteria2,124,2412,030[112]
9-941 (chromosome II)Alphaproteobacteria1,162,2041,055[112]
Brucella melitensis16M (chromosome I)Alphaproteobacteria2,117,1442,059[113]
16M (chromosome II)Alphaproteobacteria1,177,7871,139[113]
Brucella suis1330 (chromosome I)Alphaproteobacteria2,107,7942,123[114]
1330 (chromosome II)Alphaproteobacteria1,207,3811,150[114]
Caulobacter crescentusCB15Alphaproteobacteria4,016,9473,737[115]
Ehrlichia canisJakeAlphaproteobacteria1,315,030925Unpublished[1]
Ehrlichia chaffeensisArkansasAlphaproteobacteria1,176,2481,105[108]
Ehrlichia ruminantiumGardelAlphaproteobacteria1,499,920950Unpublished[1]
Ehrlichia ruminantiumWelgevondenAlphaproteobacteria1,512,977958Unpublished[1]
UnspecifiedUnspecifiedAlphaproteobacteria1,516,355920[116]
Erythrobacter litoralisHTCC2594Alphaproteobacteria3,052,3983,011Unpublished[1]
Gluconobacter oxydans621HAlphaproteobacteria2,702,1732,432[117]
Jannaschia speciesCCS1Alphaproteobacteria4,317,9774,212Unpublished[1]
Magnetospirillum magneticumAMB1Alphaproteobacteria4,967,1484,559[118]
Mesorhizobium lotiMAFF303099Alphaproteobacteria7,036,0716,752[119]
Neorickettsia sennetsuMiyayamaAlphaproteobacteria859,006932[108]
Nitrobacter hamburgensisX14Alphaproteobacteria4,406,9673,804Unpublished[1]
Nitrobacter winogradskyiNb255Alphaproteobacteria3,402,0933,122Unpublished[1]
Novosphingobium aromaticivoransDSM12444Alphaproteobacteria3,561,5843,324Unpublished[1]
Pelagibacter ubiqueHTCC1062Alphaproteobacteria1,308,7591,354[120]
Rhizobium etliCFN42Alphaproteobacteria4,381,6084,067[121]
Rhizobium leguminosarumviciae3841Alphaproteobacteria7,751,3094,746Unpublished[1]
Rhodobacter sphaeroides2.4.1Alphaproteobacteria3,188,6093,022Unpublished[1]
UnspecifiedUnspecifiedAlphaproteobacteria943,016835Unpublished[1]
Rhodopseudomonas palustrisBisB18Alphaproteobacteria5,513,8444,886Unpublished[1]
Rhodopseudomonas palustrisBisB5Alphaproteobacteria4,892,7174,397Unpublished[1]
Rhodopseudomonas palustrisCGA009Alphaproteobacteria5,459,2134,833[122]
Rhodopseudomonas palustrisHaA2Alphaproteobacteria5,331,6564,683Unpublished[1]
Rhodospirillum rubrumATCC11170Alphaproteobacteria4,352,8253,791Unpublished[1]
Rickettsia belliiRML369-CAlphaproteobacteria1,522,0761,429Unpublished[1]
Rickettsia conoriiMalish7Alphaproteobacteria1,268,7551,374[123]
Rickettsia felisURRWXCal2Alphaproteobacteria1,485,1481,400[124]
Rickettsia prowazekiiMadrid-EAlphaproteobacteria1,111,523834[125]
Rickettsia typhiWilmingtonAlphaproteobacteria1,111,496838[126]
Silicibacter pomeroyiDSS3Alphaproteobacteria4,109,4423,810[127]
Silicibacter speciesTM1040Alphaproteobacteria3,200,9383,030Unpublished[1]
Sinorhizobium medicaeWSM419Alphaproteobacteria3,781,9043,635[128]
Sinorhizobium melilotiRm1021Alphaproteobacteria3,654,1353,341[129]
Sphingopyxis alaskensisRB2256Alphaproteobacteria3,345,1703,165Unpublished[1]
Wolbachia endosymbiontTRSAlphaproteobacteria1,080,084805[130]
Wolbachia pipientiswMelAlphaproteobacteria1,267,7821,195[131]
Zymomonas mobilisZM4Alphaproteobacteria2,056,4161,998[132]

Betaproteobacteria

[edit]
SpeciesStrainTypeBase PairsGenesReference
Azoarcus sp.EbN1Betaproteobacteria4,296,2304,1282002[133]
Bordetella bronchisepticaRB50Betaproteobacteria5,339,1795,006Unpublished[1]
Bordetella parapertussis12822Betaproteobacteria4,773,5514,402Unpublished[1]
Bordetella pertussisTohamaIBetaproteobacteria4,086,1893,806Unpublished[1]
Burkholderia cenocepaciaAU1054Betaproteobacteria3,294,5632,965Unpublished[1]
UnspecifiedUnspecifiedBetaproteobacteria2,788,4592,472Unpublished[1]
UnspecifiedUnspecifiedBetaproteobacteria1,196,0941,040Unpublished[1]
Burkholderia malleiATCC23344Betaproteobacteria3,510,1482,996Unpublished[1]
UnspecifiedUnspecifiedBetaproteobacteria2,325,3792,0292004[134]
Burkholderia pseudomallei1710bBetaproteobacteria4,126,2923,736Unpublished[1]
UnspecifiedUnspecifiedBetaproteobacteria3,181,7622,611Unpublished[1]
Burkholderia pseudomalleiK96243Betaproteobacteria4,074,542 (chromosome I)
3,173,005 (chromosome II)		3,460 (chromosome I)
2,395 (chromosome II)		2004[84]
Burkholderia species383Betaproteobacteria3,694,1263,334Unpublished[1]
UnspecifiedUnspecifiedBetaproteobacteria3,587,0823,174Unpublished[1]
UnspecifiedUnspecifiedBetaproteobacteria1,395,0691,209Unpublished[1]
Burkholderia thailandensisE264Betaproteobacteria3,809,2013,2762005[135]
UnspecifiedUnspecifiedBetaproteobacteria2,914,7712,3582005[135]
Burkholderia xenovoransLB400Betaproteobacteria4,895,8364,430Unpublished[1]
UnspecifiedUnspecifiedBetaproteobacteria3,363,5232,960Unpublished[1]
UnspecifiedUnspecifiedBetaproteobacteria1,471,7791,312Unpublished[1]
Chromobacterium violaceumATCC12472Betaproteobacteria4,751,0804,4072003[136]
Dechloromonas aromaticaRCBBetaproteobacteria4,501,1044,171Unpublished[1]
Methylobacillus flagellatusKTBetaproteobacteria2,971,5172,753Unpublished[1]
Neisseria gonorrhoeaeFA1090Betaproteobacteria2,153,9222,002Unpublished[1]
Neisseria meningitidisserogroup A strain Z2491Betaproteobacteria2,184,4062,1212000[137]
Neisseria meningitidisserogroup B strain MC58Betaproteobacteria2,272,3602,0632000[138]
Nitrosomonas europaeaSchmidtBetaproteobacteria2,812,0942,5742003[139]
Nitrosospira multiformisATCC25196Betaproteobacteria3,184,2432,757Unpublished[1]
Polaromonas speciesJS666Betaproteobacteria5,200,2644,817Unpublished[1]
Ralstonia eutrophaJMP134Betaproteobacteria3,806,5333,439Unpublished[1]
UnspecifiedUnspecifiedBetaproteobacteria2,726,1522,407Unpublished[1]
Ralstonia metalliduransCH34Betaproteobacteria3,928,0893,601Unpublished[1]
UnspecifiedUnspecifiedBetaproteobacteria2,580,0842,313Unpublished[1]
Ralstonia solanacearumGMI1000Betaproteobacteria3,716,4133,4412002[140]
UnspecifiedUnspecifiedBetaproteobacteria2,094,5091,679[140]
Rhodoferax ferrireducensDSM15236Betaproteobacteria4,712,3374,170Unpublished[1]
Thiobacillus denitrificansATCC25259Betaproteobacteria2,909,8092,827Unpublished[1]

Gammaproteobacteria

[edit]
SpeciesStrainTypeBase PairsGenesReference
Acinetobacter sp.ADP1Gammaproteobacteria3,598,6213,3252004[141]
Baumannia cicadellinicolaHcGammaproteobacteria686,194595Unpublished[1]
Blochmannia floridanusStrainGammaproteobacteria705,5575892003[142]
Blochmannia pennsylvanicusbpENGammaproteobacteria791,6546102005[143]
Buchnera aphidicolaAPSGammaproteobacteria640,6815642000[144]
Buchnera aphidicolaBGammaproteobacteria615,9805042003[145]
Buchnera aphidicolaSgGammaproteobacteria641,4545452002[146]
Carsonella ruddiiPVGammaproteobacteria159,6621822006[147]
Chromohalobacter salexigensDSM3043Gammaproteobacteria3,696,6493,298Unpublished[1]
Colwellia psychrerythraea34HGammaproteobacteria5,373,1804,910Unpublished[1]
Coxiella burnetiiRSA493Gammaproteobacteria1,995,2812,0162003[148]
Erwinia carotovoraSCRI1043Gammaproteobacteria5,064,0194,492Unpublished[1]
Escherichia coli536Gammaproteobacteria4,938,9204,685Unpublished[1]
Escherichia coliCFT073Gammaproteobacteria5,231,4285,3792002[149]
Escherichia coliK-12Gammaproteobacteria4,639,675 (4,646,332)4,331 (4,337)1997,[150] 2005[151]
Escherichia coliO157:H7Gammaproteobacteria5,528,445 (5,498,450)5,349 (5,361)2001,[152] 1999[153]
Escherichia coliUTI89Gammaproteobacteria5,065,7415,066Unpublished[1]
Francisella tularensisLVSGammaproteobacteria1,895,9941,967Unpublished[1]
Francisella tularensisSCHUS4Gammaproteobacteria1,892,8191,8042005[154]
Haemophilus ducreyi3500HPGammaproteobacteria1,698,9551,717Unpublished[1]
Haemophilus influenzae86-028NPGammaproteobacteria1,913,4281,7922005[155]
Haemophilus influenzaeRdGammaproteobacteria1,830,1381,7091995[156]
Hahella chejuensisKCTC2396Gammaproteobacteria7,215,2676,7822005[157]
Idiomarina loihiensisL2TRGammaproteobacteria2,839,3182,6282004[158]
Legionella pneumophilaLensGammaproteobacteria3,345,6872,9472004[159]
Legionella pneumophilaParisGammaproteobacteria3,503,6103,0822004[159]
Legionella pneumophilaPhiladelphia1Gammaproteobacteria3,397,7542,942Unpublished[1]
Mannheimia succiniciproducensMBEL55EGammaproteobacteria2,314,0782,384Unpublished[1]
Methylococcus capsulatusBathGammaproteobacteria3,304,5612,9602004[160]
Nitrosococcus oceaniATCC19707Gammaproteobacteria3,481,6912,976Unpublished[1]
Pasteurella multocidaPm70Gammaproteobacteria2,257,4872,0142001[161]
Photobacterium profundumSS9Gammaproteobacteria4,085,3043,416Unpublished[1]
UnspecifiedUnspecifiedGammaproteobacteria2,237,9431,997Unpublished[1]
Photorhabdus luminescenslaumondiiTTO1Gammaproteobacteria5,688,9874,905Unpublished[1]
Pseudoalteromonas haloplanktisTAC125Gammaproteobacteria3,214,9442,9412005[162]
UnspecifiedUnspecifiedGammaproteobacteria635,328546[162]
Pseudomonas aeruginosaVRFPA04Gammaproteobacteria6,818,0305,9392016[163]
Pseudomonas entomophilaL48Gammaproteobacteria5,888,7805,168Unpublished[1]
Pseudomonas fluorescensPf-5Gammaproteobacteria7,074,8936,1372005[164]
Pseudomonas fluorescensPfO-1Gammaproteobacteria6,438,4055,736Unpublished[1]
Pseudomonas putidaKT2440Gammaproteobacteria6,181,8635,3502002[165]
Pseudomonas syringaeB728aGammaproteobacteria6,093,6985,1362005[166]
Pseudomonas syringaeDC3000Gammaproteobacteria6,397,1265,4702003[167]
Pseudomonas syringaephaseolicola1448AGammaproteobacteria5,928,7874,983Unpublished[1]
Psychrobacter arcticum273-4Gammaproteobacteria2,650,7012,147Unpublished[1]
Psychrobacter cryohalolentisK5Gammaproteobacteria~3.1Mb2,575[168]
UnspecifiedUnspecifiedGammaproteobacteria3,059,8762,467Unpublished[1]
Saccharophagus degradansFeb-40Gammaproteobacteria5,057,5314,008Unpublished[1]
Salmonella entericaATCC9150Gammaproteobacteria4,585,2294,0932004[169]
Salmonella entericaSCB67Gammaproteobacteria4,755,7004,4452005[170]
Salmonella entericaTy2Gammaproteobacteria4,791,9614,3232003[171]
Salmonella entericatyphiCT18Gammaproteobacteria4,809,0374,6002001[172]
Salmonella typhimuriumLT2Gammaproteobacteria4,857,4324,4522001[173]
Shewanella denitrificansOS217Gammaproteobacteria4,545,9063,754Unpublished[1]
Shewanella oneidensisMR1Gammaproteobacteria4,969,8034,6302002[174]
Shigella boydiiSb227Gammaproteobacteria4,519,8234,1422005[175]
Shigella dysenteriaeSd197Gammaproteobacteria4,369,2324,2772005[175]
Shigella flexneri2457TGammaproteobacteria4,599,3544,0732003[176]
Shigella flexneri2a301Gammaproteobacteria4,607,2034,4362002[177]
Shigella sonneiSs046Gammaproteobacteria4,825,2654,2242005[175]
Sodalis glossinidiusmorsitansGammaproteobacteria4,171,1462,4322006[178]
Thiomicrospira crunogenaXCL2Gammaproteobacteria2,427,7342,192Unpublished[1]
Vibrio choleraeN16961Gammaproteobacteria2,961,149 (chromosome I)
1,072,315 (chromosome II)		2,736 (chromosome I)
1,092 (chromosome II)		2000[179]
Vibrio fischeriES114Gammaproteobacteria2,906,179 (chromosome I)
1,332,022 (chromosome II)		2,575 (chromosome I)
1,172 (chromosome II)		2005[180]
Vibrio parahaemolyticusRIMD2210633Gammaproteobacteria3,288,558 (chromosome I)
1,877,212 (chromosome II)		3,080 (chromosome I)
1,752 (chromosome II)		2000[181]
Vibrio vulnificusCMCP6Gammaproteobacteria3,281,944 (chromosome I)
1,844,853 (chromosome II)		2,973 (chromosome I)
1,565 (chromosome II)		2003[182]
Vibrio vulnificusYJ016Gammaproteobacteria3,354,505 (chromosome I)
1,857,073 (chromosome II)		3,262 (chromosome I)
1,697 (chromosome II)		2003[183]
Wigglesworthia glossinidiaStrainGammaproteobacteria697,7246112002[184]
Xanthomonas axonopodiscitri306Gammaproteobacteria5,175,5544,3122002[185]
Xanthomonas campestris8004Gammaproteobacteria5,148,7084,2732005[186]
Xanthomonas campestris8510Gammaproteobacteria5,178,4664,4872005[187]
Xanthomonas campestrisATCC33913Gammaproteobacteria5,076,1884,1812002[185]
Xanthomonas oryzaeKACC10331Gammaproteobacteria4,941,4394,6372005[188]
Xanthomonas oryzaeMAFF311018Gammaproteobacteria4,940,2174,372Unpublished[1]
Xylella fastidiosa9a5cGammaproteobacteria2,679,3062,7662000[189]
Xylella fastidiosaTemecula1Gammaproteobacteria2,519,8022,0342003[190]
Yersinia pestisAntiquaGammaproteobacteria4,702,2894,1672006[191]
Yersinia pestisCO-92BiovarOrientalisGammaproteobacteria4,653,7284,0082001[192]
Yersinia pestisKIMGammaproteobacteria4,600,7554,0902002[193]
Yersinia pestisMediaevalisGammaproteobacteria4,595,0653,8952004[194]
Yersinia pseudotuberculosisIP32953Gammaproteobacteria4,744,6713,9742004[195]

Zetaproteobacteria

[edit]

Myxococcota–Campylobacterota

[edit]
SpeciesStrainTypeBase PairsGenesReference
Anaeromyxobacter dehalogenans2CP-Cdelta-epsilon5,013,4794,346Unpublished[1]
Bdellovibrio bacteriovorusHD100delta-epsilon3,782,9503,5832004[196]
Campylobacter jejuniNCTC11168delta-epsilon1,641,4811,6432000[197]
Campylobacter jejuniRM1221delta-epsilon1,777,8311,8382005[198]
Desulfotalea psychrophilaLSv54delta-epsilon3,523,3833,118Unpublished[1]
Desulfovibrio desulfuricansG20delta-epsilon3,730,2323,775Unpublished[1]
Desulfovibrio vulgarisHildenboroughdelta-epsilon3,570,8583,3792004[199]
Geobacter metallireducensGS15delta-epsilon3,997,4203,519Unpublished[1]
Geobacter sulfurreducensPCAdelta-epsilon3,814,1393,4472003[200]
Helicobacter hepaticusATCC51449delta-epsilon1,799,1461,8752003[201]
Helicobacter pylori26695delta-epsilon1,667,8671,5661997[202]
Helicobacter pyloriHPAG1delta-epsilon1,596,3661,536Unpublished[1]
Helicobacter pyloriJ99delta-epsilon1,643,8311,4911999[203]
Lawsonia intracellularisPHEMN1-00delta-epsilon1,719,0141,344Unpublished[1]
Lawsonia intracellularisPHE/MN1-00delta-epsilon1,457,619 (chromosome)
27,048 (plasmid A)
39,794 (plasmid B)
194,553 (plasmid C)		1,187
29 (plasmid A)
24 (plasmid B)
104 (plasmid C)		2013[204]
Myxococcus xanthusDK1622delta-epsilon9,139,7637,331Unpublished[1]
Pelobacter carbinolicusDSM2380delta-epsilon3,665,8933,119Unpublished[1]
Sorangium cellulosumSo ce56delta-epsilon13,033,7799,3672007[205]
Sulfurimonas denitrificansDSM1251delta-epsilon2,201,5612,1042007[206]
Syntrophus aciditrophicusSBdelta-epsilon3,179,3003,168Unpublished[1]
Thiomicrospira denitrificansATCC33889delta-epsilon2,201,5612,097Unpublished[1]
Wolinella succinoDSMZ1740delta-epsilon2,110,3552,0442003[207]

Spirochaetota

[edit]
SpeciesStrainTypeBase PairsGenesReference
Borrelia burgdorferiB31Spirochaetota910,724850[208]
Borrelia gariniiPBiSpirochaetota904,246832[209]
Leptospira interrogans56601Spirochaetota4,332,2414,358[210]
UnspecifiedUnspecifiedSpirochaetota358,943367[210]
Leptospira interrogansFiocruzL1130Spirochaetota4,277,1853,394[211]
UnspecifiedUnspecifiedSpirochaetota350,181264[211]
Treponema denticolaATCC35405Spirochaetota2,843,2012,767[212]
Treponema pallidumNicholsSpirochaetota1,138,0111,031[213]

Synergistota

[edit]
SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Thermovirga lieniiCas60314, DSM 17291Synergistia1,967,774DOE Joint Genome InstituteCP003096

Mycoplasmatota

[edit]
SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Mesoplasma florumL1Mollicutes793,224683Unpublished[1]
Mycoplasma anatis1340, ATCC 25524Mollicutes[214]AFVJ00000000
Mycoplasma capricolumATCC273Mollicutes1,010,023812Unpublished[1]
Mycoplasma gallisepticumRMollicutes996,422726[215]
Mycoplasma genitaliumG37Mollicutes580,076476[216]
Mycoplasma haemocanisIllinoisMollicutes919,992UnpublishedCP003199
Mycoplasma hyopneumoniae232Mollicutes892,758691[217]
Mycoplasma hyopneumoniae7448Mollicutes920,079663[218]
Mycoplasma hyopneumoniaeJMollicutes897,405665[218]
Mycoplasma hyorhinisGDL-1Mollicutes837,480UnpublishedCP003231
Mycoplasma leachii99/014/6Mollicutes1,017,232UnpublishedFR668087
Mycoplasma mobile163KMollicutes777,079635[219]
Mycoplasma mycoidesSCMollicutes1,211,7031,016[220]
Mycoplasma penetransHF2Mollicutes1,358,6331,037[221]
Mycoplasma pneumoniaeM129Mollicutes816,394688[222]
Mycoplasma pulmonisUABMollicutes963,879782[223]
Mycoplasma synoviae53Mollicutes799,476672[218]
Phytoplas maasterisAYWBMollicutes706,569671Unpublished[1]
Phytoplas maasterisOYMollicutes860,631754[224]
Ureaplasma urealyticumserovar3Mollicutes751,719611[225]

Thermodesulfobacteriota

[edit]
SpeciesStrainTypeBase PairsGenesReference
Thermodesulfatator indicusCIR29812(T)Thermodesulfobacteriota2,322,2242,2912012[226]
Thermodesulfobacterium geofontisOPF15(T)Thermodesulfobacteriota1,634,3771,6352013[227]

Thermotogota

[edit]
SpeciesStrainTypeBase PairsGenesReference
Fervidobacterium nodosumRt17-B1Thermotogota1,950,0001,7502009[228]
Kosmotoga oleariaTBF 19.5.1Thermotogota2,302,1262,1182011[229]
Mesotoga primaMesG1.Ag.4.2Thermotogota2,974,229 chromosome
1,724 plasmid		2,7362012[230]
Thermosipho africanusTCF52BThermotogota2,016,6572,0002009[231]
Thermosipho melanesiensisBI429Thermotogota1,920,0001,8792009[228]
Thermotoga lettingaeTMOThermotogota2,140,0002,0402009[228]
Thermotoga maritimaMSB8Thermotogota1,860,7251,8461999,[232] 2013[233]
Thermotoga petrophilaRKU-1Thermotogota1,820,0001,7852009[228]

See also

[edit]

References

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