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DDR1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
For the type of computer memory, seeDDR SDRAM.
DDR1
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

3ZOS,4AG4,4BKJ,4CKR,5BVK,5BVN,5BVO,5BVW,5FDP

Identifiers
AliasesDDR1, CAK, CD167, DDR, EHGK2, MCK10, NEP, NTRK4, PTK3, PTK3A, RTK6, TRKE, discoidin domain receptor tyrosine kinase 1
External IDsOMIM:600408;MGI:99216;HomoloGene:68212;GeneCards:DDR1;OMA:DDR1 - orthologs
Gene location (Human)
Chromosome 6 (human)
Chr.Chromosome 6 (human)[1]
Chromosome 6 (human)
Genomic location for DDR1
Genomic location for DDR1
Band6p21.33Start30,876,421bp[1]
End30,900,156bp[1]
Gene location (Mouse)
Chromosome 17 (mouse)
Chr.Chromosome 17 (mouse)[2]
Chromosome 17 (mouse)
Genomic location for DDR1
Genomic location for DDR1
Band17 B1|17 18.7 cMStart35,992,459bp[2]
End36,015,513bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • ventricular zone

  • right uterine tube

  • ganglionic eminence

  • olfactory zone of nasal mucosa

  • C1 segment

  • minor salivary glands

  • islet of Langerhans

  • skin of abdomen

  • mucosa of esophagus

  • substantia nigra
Top expressed in
  • ciliary body

  • iris

  • Epithelium of choroid plexus

  • retinal pigment epithelium

  • conjunctival fornix

  • Rostral migratory stream

  • medial ganglionic eminence

  • epithelium of stomach

  • motor neuron

  • parotid gland
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

780

12305

Ensembl
ENSG00000215522
ENSG00000137332
ENSG00000229767
ENSG00000230456
ENSG00000234078

ENSG00000204580
ENSG00000223680

ENSMUSG00000003534

UniProt

Q08345

Q03146

RefSeq (mRNA)
NM_001202521
NM_001202522
NM_001202523
NM_001297652
NM_001297653

NM_001297654
NM_001954
NM_013993
NM_013994

NM_001198831
NM_001198833
NM_007584
NM_172962

RefSeq (protein)
NP_001189450
NP_001189451
NP_001189452
NP_001284581
NP_001284582

NP_001284583
NP_001945
NP_054699
NP_054700
NP_001284583.1
NP_054699.2

NP_001185760
NP_001185762
NP_031610
NP_766550

Location (UCSC)Chr 6: 30.88 – 30.9 MbChr 17: 35.99 – 36.02 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Discoidin domain receptor family, member 1, also known asDDR1 orCD167a (cluster of differentiation 167a), is a humangene.[5]

Function

[edit]

Receptor tyrosine kinases (RTKs) play a key role in the communication of cells with their microenvironment. These molecules are involved in the regulation of cell growth, differentiation and metabolism. The protein encoded by this gene is a RTK that is widely expressed in normal and transformed epithelial cells and is activated by various types ofcollagen. This protein belongs to a subfamily of tyrosine kinase receptors with a homology region to theDictyostelium discoideum proteindiscoidin I in their extracellular domain. Its autophosphorylation is achieved by all collagens so far tested (type I to type VI). A closely related family member is theDDR2 protein.[6] In situ studies and Northern-blot analysis showed that expression of this encoded protein is restricted to epithelial cells, particularly in the kidney, lung, gastrointestinal tract, and brain. In addition, this protein is significantly over-expressed in several human tumors from breast, ovarian,esophageal, and pediatric brain. This gene is located on chromosome 6p21.3 in proximity to severalHLA class I genes.Alternative splicing of this gene results in multiple transcript variants.[5]

References

[edit]
  1. ^abcENSG00000137332, ENSG00000229767, ENSG00000230456, ENSG00000234078, ENSG00000204580, ENSG00000223680 GRCh38: Ensembl release 89: ENSG00000215522, ENSG00000137332, ENSG00000229767, ENSG00000230456, ENSG00000234078, ENSG00000204580, ENSG00000223680Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000003534Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ab"Entrez Gene: DDR1 discoidin domain receptor family, member 1".
  6. ^Fu HL, Valiathan RR, Arkwright R, Sohail A, Mihai C, Kumarasiri M, Mahasenan KV, Mobashery S, Huang P, Agarwal G, Fridman R (Mar 2013)."Discoidin domain receptors: unique receptor tyrosine kinases in collagen-mediated signaling".The Journal of Biological Chemistry.288 (11):7430–7.doi:10.1074/jbc.R112.444158.PMC 3597784.PMID 23335507.

Further reading

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.


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