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bioRxiv
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Noise leads to the perceived increase in evolutionary rates over short time scales

View ORCID ProfileBrian C.O’Meara,Jeremy M.Beaulieu
doi: https://doi.org/10.1101/2024.02.29.582777
Brian C. O’Meara
aDepartment of Ecology and Evolutionary Biology, University of Tennessee; Knoxville, Tennessee, 37996-1610USA
Jeremy M. Beaulieu
bDepartment of Biological Sciences, University of Arkansas; Fayetteville, Arkansas, 72701USA
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Abstract

Across a variety of biological datasets, from genomes to conservation to the fossil record, evolutionary rates appear to increase toward the present or over short time scales. This has long been seen as an indication of processes operating differently at different time scales, even potentially as an indicator of a need for new theory connecting macroevolution and microevolution. Here we introduce a set of models that assess the relationship between rate and time and demonstrate that these patterns are statistical artifacts of time-independent errors present across ecological and evolutionary datasets, which produce hyperbolic patterns of rates through time. We show that plotting a noisy numerator divided by time versus time leads to the observed hyperbolic pattern; in fact, randomizing the amount of change over time generates patterns functionally identical to observed patterns. Ignoring errors can not only obscure true patterns but create novel patterns that have long misled scientists.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Competing Interest Statement: The authors declare that they have no competing interests.

  • We have rewritten the paper to be more accessible to a broader readership. We have also added a whole new section on simulations and what they show about the new method.

  • https://github.com/bomeara/hyperbolic_rates

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license.
Posted June 26, 2024.
Noise leads to the perceived increase in evolutionary rates over short time scales
Brian C.O’Meara,Jeremy M.Beaulieu
bioRxiv2024.02.29.582777;doi: https://doi.org/10.1101/2024.02.29.582777
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