| Branch |  |  |
|---|---|---|
master |  |  |
develop |  |  |
Work with BEAST2 packages from R.
Related packages:
- babette do a full BEAST2 workflow.
- beautier creates BEAST2 input (
.xml) files. - beastier runs BEAST2
- lumier helps to create the
babettefunction call needed - tracerer parses BEAST2 output (
.log,.trees, etc) files.
Non-CRAN extensions:
- beastierinstall Install and uninstall BEAST2
- mauricerinstall Install and uninstall BEAST2 packages
Examples
To install the BEAST2 NS package:
remotes::install_github("richelbilderbeek/mauricerinstall")mauricerinstall::install_beast2_pkg("NS")An introduction video:
Package dependencies
| Package | |
|---|---|
| beastier |  |
Files used by continuous integration scripts
| Filename | Descriptions |
|---|---|
| mlc_config.json | Configuration of the link checker, usemarkdown-link-check --config mlc_config.json --quiet docs/**/*.md to do link checking locally |
| .spellcheck.yml | Configuration of the spell checker, usepyspelling -c .spellcheck.yml to do spellcheck locally |
| .wordlist.txt | Whitelisted words for the spell checker, usepyspelling -c .spellcheck.yml to do spellcheck locally |
| .markdownlint.jsonc | Configuration of the markdown linter, usemarkdownlint "**/*.md" to do markdown linting locally. The name of this file is a default name. |
| .markdownlintignore | Files ignored by the markdown linter, usemarkdownlint "**/*.md" to do markdown linting locally. The name of this file is a default name. |