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• 2024
• 
  [j21]
  Jenelle A. Jindal,Matthew P. Lungren,Nigam H. Shah:
  Ensuring useful adoption of generative artificial intelligence in healthcare.J. Am. Medical Informatics Assoc.31(6):1441-1444 (2024)
• 
  [j20]
  Jieneng Chen,Jieru Mei,Xianhang Li,Yongyi Lu,Qihang Yu,Qingyue Wei,Xiangde Luo,Yutong Xie,Ehsan Adeli,Yan Wang,Matthew P. Lungren,Shaoting Zhang,Lei Xing,Le Lu,Alan L. Yuille,Yuyin Zhou:
  TransUNet: Rethinking the U-Net architecture design for medical image segmentation through the lens of transformers.Medical Image Anal.97:103280 (2024)
• 
  [c23]
  Shaury Srivastav,Mercy Ranjit,Fernando Pérez-García,Kenza Bouzid,Shruthi Bannur,Daniel C. Castro,Anton Schwaighofer,Harshita Sharma,Maximilian Ilse,Valentina Salvatelli,Sam Bond-Taylor,Fabian Falck,Anja Thieme,Hannah Richardson,Matthew P. Lungren,Stephanie L. Hyland,Javier Alvarez-Valle:
  MAIRA at RRG24: A specialised large multimodal model for radiology report generation.BioNLP@ACL2024:597-602
• 
  [c22]
  Nur Yildirim,Hannah Richardson,Maria Teodora Wetscherek,Junaid Bajwa,Joseph Jacob,Mark Ames Pinnock,Stephen Harris,Daniel Coelho de Castro,Shruthi Bannur,Stephanie L. Hyland,Pratik Ghosh,Mercy Ranjit,Kenza Bouzid,Anton Schwaighofer,Fernando Pérez-García,Harshita Sharma,Ozan Oktay,Matthew P. Lungren,Javier Alvarez-Valle,Aditya V. Nori,Anja Thieme:
  Multimodal Healthcare AI: Identifying and Designing Clinically Relevant Vision-Language Applications for Radiology.CHI2024:444:1-444:22
• 
  [c21]
  Yuyin Zhou,Xianhang Li,Fengze Liu,Qingyue Wei,Xuxi Chen,Lequan Yu,Cihang Xie,Matthew P. Lungren,Lei Xing:
  L2B: Learning to Bootstrap Robust Models for Combating Label Noise.CVPR2024:23523-23533
• 
  [c20]
  Fernando Pérez-García,Sam Bond-Taylor,Pedro P. Sanchez,Boris van Breugel,Daniel C. Castro,Harshita Sharma,Valentina Salvatelli,Maria T. A. Wetscherek,Hannah Richardson,Matthew P. Lungren,Aditya V. Nori,Javier Alvarez-Valle,Ozan Oktay,Maximilian Ilse:
  RadEdit: Stress-Testing Biomedical Vision Models via Diffusion Image Editing.ECCV (12)2024:358-376
• 
  [i49]
  Fernando Pérez-García,Harshita Sharma,Sam Bond-Taylor,Kenza Bouzid,Valentina Salvatelli,Maximilian Ilse,Shruthi Bannur,Daniel C. Castro,Anton Schwaighofer,Matthew P. Lungren,Maria Wetscherek,Noel Codella,Stephanie L. Hyland,Javier Alvarez-Valle,Ozan Oktay:
  RAD-DINO: Exploring Scalable Medical Image Encoders Beyond Text Supervision.CoRRabs/2401.10815 (2024)
• 
  [i48]
  Nur Yildirim,Hannah Richardson,Maria T. A. Wetscherek,Junaid Bajwa,Joseph Jacob,Mark A. Pinnock,Stephen Harris,Daniel Coelho de Castro,Shruthi Bannur,Stephanie L. Hyland,Pratik Ghosh,Mercy Ranjit,Kenza Bouzid,Anton Schwaighofer,Fernando Pérez-García,Harshita Sharma,Ozan Oktay,Matthew P. Lungren,Javier Alvarez-Valle,Aditya V. Nori,Anja Thieme:
  Multimodal Healthcare AI: Identifying and Designing Clinically Relevant Vision-Language Applications for Radiology.CoRRabs/2402.14252 (2024)
• 
  [i47]
  Juan Manuel Zambrano Chaves,Shih-Cheng Huang,Yanbo Xu,Hanwen Xu,Naoto Usuyama,Sheng Zhang,Fei Wang,Yujia Xie,Mahmoud Khademi,Ziyi Yang,Hany Hassan Awadalla,Julia Gong,Houdong Hu,Jianwei Yang,Chunyuan Li,Jianfeng Gao,Yu Gu,Cliff Wong,Mu Wei,Tristan Naumann,Muhao Chen,Matthew P. Lungren,Serena Yeung-Levy,Curtis P. Langlotz,Sheng Wang,Hoifung Poon:
  Training Small Multimodal Models to Bridge Biomedical Competency Gap: A Case Study in Radiology Imaging.CoRRabs/2403.08002 (2024)
• 
  [i46]
  Anja Thieme,Abhijith Rajamohan,Benjamin Cooper,Heather Groombridge,Robert Simister,Barney Wong,Nicholas Woznitza,Mark Ames Pinnock,Maria Teodora Wetscherek,Cecily Morrison,Hannah Richardson,Fernando Pérez-García,Stephanie L. Hyland,Shruthi Bannur,Daniel C. Castro,Kenza Bouzid,Anton Schwaighofer,Mercy Ranjit,Harshita Sharma,Matthew P. Lungren,Ozan Oktay,Javier Alvarez-Valle,Aditya V. Nori,Stephen Harris,Joseph Jacob:
  Challenges for Responsible AI Design and Workflow Integration in Healthcare: A Case Study of Automatic Feeding Tube Qualification in Radiology.CoRRabs/2405.05299 (2024)
• 
  [i45]
  Shruthi Bannur,Kenza Bouzid,Daniel C. Castro,Anton Schwaighofer,Sam Bond-Taylor,Maximilian Ilse,Fernando Pérez-García,Valentina Salvatelli,Harshita Sharma,Felix Meissen,Mercy Ranjit,Shaury Srivastav,Julia Gong,Fabian Falck,Ozan Oktay,Anja Thieme,Matthew P. Lungren,Maria Teodora Wetscherek,Javier Alvarez-Valle,Stephanie L. Hyland:
  MAIRA-2: Grounded Radiology Report Generation.CoRRabs/2406.04449 (2024)
• 
  [i44]
  Noel C. F. Codella,Ying Jin,Shrey Jain,Yu Gu,Ho Hin Lee,Asma Ben Abacha,Alberto Santamaría-Pang,Will Guyman,Naiteek Sangani,Sheng Zhang,Hoifung Poon,Stephanie Hyland,Shruthi Bannur,Javier Alvarez-Valle,Xue Li,John Garrett,Alan McMillan,Gaurav Rajguru,Madhu Maddi,Nilesh Vijayrania,Rehaan Bhimai,Nick Mecklenburg,Rupal Jain,Daniel Holstein,Naveen Gaur,Vijay Aski,Jenq-Neng Hwang,Thomas Lin,Ivan Tarapov,Matthew P. Lungren,Mu Wei:
  MedImageInsight: An Open-Source Embedding Model for General Domain Medical Imaging.CoRRabs/2410.06542 (2024)
• 
  [i43]
  Jameson Merkow,Felix J. Dorfner,Xiyu Yang,Alexander Ersoy,Giridhar Dasegowda,Mannudeep K. Kalra,Matthew P. Lungren,Christopher P. Bridge,Ivan Tarapov:
  Scalable Drift Monitoring in Medical Imaging AI.CoRRabs/2410.13174 (2024)
• 2023
• 
  [j19]
  Andre Esteva,Jean Feng,Douwe van der Wal,Shih-Cheng Huang,Jeffry P. Simko,Sandy Devries,Emmalyn Chen,Edward M. Schaeffer,Todd M. Morgan,Yilun Sun,Amirata Ghorbani,Nikhil Naik,Dhruv Nathawani,Richard Socher,Jeff M. Michalski,Mack Roach,Thomas M. Pisansky,Jedidiah M. Monson,Farah Naz,James Wallace,Michelle J. Ferguson,Jean-Paul Bahary,James Zou,Matthew P. Lungren,Serena Yeung,Ashley E. Ross,Michael J. Kucharczyk,Luis Souhami,Leslie Ballas,Christopher A. Peters,Sandy Liu,Alexander G. Balogh,Pamela D. Randolph-Jackson,David L. Schwartz,Michael R. Girvigian,Naoyuki G. Saito,Adam Raben,Rachel A. Rabinovitch,Khalil Katato,Howard M. Sandler,Phuoc T. Tran,Daniel E. Spratt,Stephanie Pugh,Felix Y. Feng,Osama Mohamad:
  Author Correction: Prostate cancer therapy personalization via multi-modal deep learning on randomized phase III clinical trials.npj Digit. Medicine6 (2023)
• 
  [j18]
  Shih-Cheng Huang,Anuj Pareek,Malte E. K. Jensen,Matthew P. Lungren,Serena Yeung,Akshay S. Chaudhari:
  Self-supervised learning for medical image classification: a systematic review and implementation guidelines.npj Digit. Medicine6 (2023)
• 
  [c19]
  Shruthi Bannur,Stephanie L. Hyland,Qianchu Liu,Fernando Pérez-García,Maximilian Ilse,Daniel C. Castro,Benedikt Boecking,Harshita Sharma,Kenza Bouzid,Anja Thieme,Anton Schwaighofer,Maria Wetscherek,Matthew P. Lungren,Aditya V. Nori,Javier Alvarez-Valle,Ozan Oktay:
  Learning to Exploit Temporal Structure for Biomedical Vision-Language Processing.CVPR2023:15016-15027
• 
  [c18]
  Elizabeth Bondi-Kelly,Thomas Hartvigsen,Lindsay M. Sanneman,Swami Sankaranarayanan,Zach Harned,Grace Wickerson,Judy Wawira Gichoya,Lauren Oakden-Rayner,Leo Anthony Celi,Matthew P. Lungren,Julie A. Shah,Marzyeh Ghassemi:
  Taking Off with AI: Lessons from Aviation for Healthcare.EAAMO2023:4:1-4:14
• 
  [c17]
  Qianchu Liu,Stephanie L. Hyland,Shruthi Bannur,Kenza Bouzid,Daniel C. Castro,Maria Wetscherek,Robert Tinn,Harshita Sharma,Fernando Pérez-García,Anton Schwaighofer,Pranav Rajpurkar,Sameer Tajdin Khanna,Hoifung Poon,Naoto Usuyama,Anja Thieme,Aditya V. Nori,Matthew P. Lungren,Ozan Oktay,Javier Alvarez-Valle:
  Exploring the Boundaries of GPT-4 in Radiology.EMNLP2023:14414-14445
• 
  [c16]
  Jameson Merkow,Arjun Soin,Jin Long,Joseph Paul Cohen,Smitha Saligrama,Christopher P. Bridge,Xiyu Yang,Stephen Kaiser,Steven Borg,Ivan Tarapov,Matthew P. Lungren:
  CheXstray: A Real-Time Multi-Modal Monitoring Workflow for Medical Imaging AI.MICCAI (3)2023:326-336
• 
  [c15]
  Shih-Cheng Huang,Zepeng Huo,Ethan Steinberg,Chia-Chun Chiang,Curtis P. Langlotz,Matthew P. Lungren,Serena Yeung,Nigam Shah,Jason Alan Fries:
  INSPECT: A Multimodal Dataset for Patient Outcome Prediction of Pulmonary Embolisms.NeurIPS2023
• 
  [i42]
  Shruthi Bannur,Stephanie L. Hyland,Qianchu Liu,Fernando Pérez-García,Maximilian Ilse,Daniel C. Castro,Benedikt Boecking,Harshita Sharma,Kenza Bouzid,Anja Thieme,Anton Schwaighofer,Maria Wetscherek,Matthew P. Lungren,Aditya V. Nori,Javier Alvarez-Valle,Ozan Oktay:
  Learning to Exploit Temporal Structure for Biomedical Vision-Language Processing.CoRRabs/2301.04558 (2023)
• 
  [i41]
  Yuhui Zhang,Shih-Cheng Huang,Zhengping Zhou,Matthew P. Lungren,Serena Yeung:
  Adapting Pre-trained Vision Transformers from 2D to 3D through Weight Inflation Improves Medical Image Segmentation.CoRRabs/2302.04303 (2023)
• 
  [i40]
  Sheng Zhang,Yanbo Xu,Naoto Usuyama,Jaspreet Bagga,Robert Tinn,Sam Preston,Rajesh Rao,Mu Wei,Naveen Valluri,Cliff Wong,Matthew P. Lungren,Tristan Naumann,Hoifung Poon:
  Large-Scale Domain-Specific Pretraining for Biomedical Vision-Language Processing.CoRRabs/2303.00915 (2023)
• 
  [i39]
  Joseph Paul Cohen,Rupert Brooks,Sovann En,Evan Zucker,Anuj Pareek,Matthew P. Lungren,Akshay Chaudhari:
  The Effect of Counterfactuals on Reading Chest X-rays.CoRRabs/2304.00487 (2023)
• 
  [i38]
  Debadutta Dash,Rahul Thapa,Juan M. Banda,Akshay Swaminathan,Morgan Cheatham,Mehr Kashyap,Nikesh Kotecha,Jonathan H. Chen,Saurabh Gombar,Lance Downing,Rachel Pedreira,Ethan Goh,Angel Arnaout,Garret Kenn Morris,Honor Magon,Matthew P. Lungren,Eric Horvitz,Nigam H. Shah:
  Evaluation of GPT-3.5 and GPT-4 for supporting real-world information needs in healthcare delivery.CoRRabs/2304.13714 (2023)
• 
  [i37]
  Jieneng Chen,Jieru Mei,Xianhang Li,Yongyi Lu,Qihang Yu,Qingyue Wei,Xiangde Luo,Yutong Xie,Ehsan Adeli,Yan Wang,Matthew P. Lungren,Lei Xing,Le Lu,Alan L. Yuille,Yuyin Zhou:
  3D TransUNet: Advancing Medical Image Segmentation through Vision Transformers.CoRRabs/2310.07781 (2023)
• 
  [i36]
  Yu Gu,Jianwei Yang,Naoto Usuyama,Chunyuan Li,Sheng Zhang,Matthew P. Lungren,Jianfeng Gao,Hoifung Poon:
  BiomedJourney: Counterfactual Biomedical Image Generation by Instruction-Learning from Multimodal Patient Journeys.CoRRabs/2310.10765 (2023)
• 
  [i35]
  Qianchu Liu,Stephanie L. Hyland,Shruthi Bannur,Kenza Bouzid,Daniel C. Castro,Maria Teodora Wetscherek,Robert Tinn,Harshita Sharma,Fernando Pérez-García,Anton Schwaighofer,Pranav Rajpurkar,Sameer Tajdin Khanna,Hoifung Poon,Naoto Usuyama,Anja Thieme,Aditya V. Nori,Matthew P. Lungren,Ozan Oktay,Javier Alvarez-Valle:
  Exploring the Boundaries of GPT-4 in Radiology.CoRRabs/2310.14573 (2023)
• 
  [i34]
  Shih-Cheng Huang,Zepeng Huo,Ethan Steinberg,Chia-Chun Chiang,Matthew P. Lungren,Curtis P. Langlotz,Serena Yeung,Nigam H. Shah,Jason A. Fries:
  INSPECT: A Multimodal Dataset for Pulmonary Embolism Diagnosis and Prognosis.CoRRabs/2311.10798 (2023)
• 
  [i33]
  Stephanie L. Hyland,Shruthi Bannur,Kenza Bouzid,Daniel C. Castro,Mercy Ranjit,Anton Schwaighofer,Fernando Pérez-García,Valentina Salvatelli,Shaury Srivastav,Anja Thieme,Noel Codella,Matthew P. Lungren,Maria Teodora Wetscherek,Ozan Oktay,Javier Alvarez-Valle:
  MAIRA-1: A specialised large multimodal model for radiology report generation.CoRRabs/2311.13668 (2023)
• 
  [i32]
  Asma Ben Abacha,Alberto Santamaría-Pang,Ho Hin Lee,Jameson Merkow,Qin Cai,Surya Teja Devarakonda,Abdullah Islam,Julia Gong,Matthew P. Lungren,Thomas Lin,Noel C. F. Codella,Ivan Tarapov:
  3D-MIR: A Benchmark and Empirical Study on 3D Medical Image Retrieval in Radiology.CoRRabs/2311.13752 (2023)
• 
  [i31]
  Fernando Pérez-García,Sam Bond-Taylor,Pedro P. Sanchez,Boris van Breugel,Daniel C. Castro,Harshita Sharma,Valentina Salvatelli,Maria T. A. Wetscherek,Hannah Richardson,Matthew P. Lungren,Aditya V. Nori,Javier Alvarez-Valle,Ozan Oktay,Maximilian Ilse:
  RadEdit: stress-testing biomedical vision models via diffusion image editing.CoRRabs/2312.12865 (2023)
• 2022
• 
  [j17]
  Adriel Saporta,Xiaotong Gui,Ashwin Agrawal,Anuj Pareek,Steven Q. H. Truong,Chanh D. T. Nguyen,Van Doan Ngo,Jayne Seekins,Francis G. Blankenberg,Andrew Y. Ng,Matthew P. Lungren,Pranav Rajpurkar:
  Benchmarking saliency methods for chest X-ray interpretation.Nat. Mac. Intell.4(10):867-878 (2022)
• 
  [j16]
  Andre Esteva,Jean Feng,Douwe van der Wal,Shih-Cheng Huang,Jeffry P. Simko,Sandy Devries,Emmalyn Chen,Edward M. Schaeffer,Todd M. Morgan,Yilun Sun,Amirata Ghorbani,Nikhil Naik,Dhruv Nathawani,Richard Socher,Jeff M. Michalski,Mack Roach,Thomas M. Pisansky,Jedidiah M. Monson,Farah Naz,James Wallace,Michelle J. Ferguson,Jean-Paul Bahary,James Zou,Matthew P. Lungren,Serena Yeung,Ashley E. Ross,Michael J. Kucharczyk,Luis Souhami,Leslie Ballas,Christopher A. Peters,Sandy Liu,Alexander G. Balogh,Pamela D. Randolph-Jackson,David L. Schwartz,Michael R. Girvigian,Naoyuki G. Saito,Adam Raben,Rachel A. Rabinovitch,Khalil Katato,Howard M. Sandler,Phuoc T. Tran,Daniel E. Spratt,Stephanie Pugh,Felix Y. Feng,Osama Mohamad:
  Prostate cancer therapy personalization via multi-modal deep learning on randomized phase III clinical trials.npj Digit. Medicine5 (2022)
• 
  [j15]
  Simon P. Rowland,J. Edward Fitzgerald,Matthew P. Lungren,Elizabeth Lee,Zach Harned,Alison H. McGregor:
  Digital health technology-specific risks for medical malpractice liability.npj Digit. Medicine5 (2022)
• 
  [j14]
  Jiangdian Song,Shih-Cheng Huang,Brendan Kelly,Guanqun Liao,Jingyun Shi,Ning Wu,Weimin Li,Zaiyi Liu,Lei Cui,Matthew P. Lungren,Michael E. Moseley,Peng Gao,Jie Tian,Kristen W. Yeom:
  Automatic Lung Nodule Segmentation and Intra-Nodular Heterogeneity Image Generation.IEEE J. Biomed. Health Informatics26(6):2570-2581 (2022)
• 
  [c14]
  Riccardo Fogliato,Shreya Chappidi,Matthew P. Lungren,Paul Fisher,Diane Wilson,Michael Fitzke,Mark Parkinson,Eric Horvitz,Kori Inkpen,Besmira Nushi:
  Who Goes First? Influences of Human-AI Workflow on Decision Making in Clinical Imaging.FAccT2022:1362-1374
• 
  [c13]
  Joseph Paul Cohen,Joseph D. Viviano,Paul Bertin,Paul Morrison,Parsa Torabian,Matteo Guarrera,Matthew P. Lungren,Akshay Chaudhari,Rupert Brooks,Mohammad Hashir,Hadrien Bertrand:
  TorchXRayVision: A library of chest X-ray datasets and models.MIDL2022:231-249
• 
  [c12]
  Yuhui Zhang,Shih-Cheng Huang,Zhengping Zhou,Matthew P. Lungren,Serena Yeung:
  Adapting Pre-trained Vision Transformers from 2D to 3D through Weight Inflation Improves Medical Image Segmentation.ML4H@NeurIPS2022:391-404
• 
  [i30]
  Arjun Soin,Jameson Merkow,Jin Long,Joseph Paul Cohen,Smitha Saligrama,Stephen Kaiser,Steven Borg,Ivan Tarapov,Matthew P. Lungren:
  CheXstray: Real-time Multi-Modal Data Concordance for Drift Detection in Medical Imaging AI.CoRRabs/2202.02833 (2022)
• 
  [i29]
  Yuyin Zhou,Xianhang Li,Fengze Liu,Xuxi Chen,Lequan Yu,Cihang Xie,Matthew P. Lungren,Lei Xing:
  Learning to Bootstrap for Combating Label Noise.CoRRabs/2202.04291 (2022)
• 
  [i28]
  Riccardo Fogliato,Shreya Chappidi,Matthew P. Lungren,Michael Fitzke,Mark Parkinson,Diane Wilson,Paul Fisher,Eric Horvitz,Kori Inkpen,Besmira Nushi:
  Who Goes First? Influences of Human-AI Workflow on Decision Making in Clinical Imaging.CoRRabs/2205.09696 (2022)
• 
  [i27]
  Vikash Gupta,Barbaros Selnur Erdal,Carolina Ramirez,Ralf Floca,Laurence Jackson,Brad W. Genereaux,Sidney Bryson,Christopher P. Bridge,Jens Kleesiek,Felix Nensa,Rickmer Braren,Khaled Younis,Tobias Penzkofer,Andreas Michael Bucher,Ming Melvin Qin,Gigon Bae,M. Jorge Cardoso,Sébastien Ourselin,Eric Kerfoot,Rahul Choudhury,Richard D. White,Tessa Sundaram Cook,David Bericat,Matthew P. Lungren,Risto Haukioja,Haris Shuaib:
  Current State of Community-Driven Radiological AI Deployment in Medical Imaging.CoRRabs/2212.14177 (2022)
• 2021
• 
  [j13]
  Tina Hernandez-Boussard,Matthew P. Lungren,Nigam Shah:
  Conflicting information from the Food and Drug Administration: Missed opportunity to lead standards for safe and effective medical artificial intelligence solutions.J. Am. Medical Informatics Assoc.28(6):1353-1355 (2021)
• 
  [j12]
  Tina Hernandez-Boussard,Matthew P. Lungren,Nigam Shah:
  Corrigendum: Conflicting information from the Food and Drug Administration: Missed opportunity to lead standards for safe and effective medical artificial intelligence solutions.J. Am. Medical Informatics Assoc.28(7):1600 (2021)
• 
  [j11]
  David Eng,Christopher Chute,Nishith Khandwala,Pranav Rajpurkar,Jin Long,Sam Shleifer,Mohamed H. Khalaf,Alexander T. Sandhu,Fátima Rodriguez,David J. Maron,Saeed Seyyedi,Daniele Marin,Ilana Golub,Matthew J. Budoff,Felipe Kitamura,Marcelo Straus Takahashi,Ross W. Filice,Rajesh Shah,John Mongan,Kimberly Kallianos,Curtis P. Langlotz,Matthew P. Lungren,Andrew Y. Ng,Bhavik N. Patel:
  Automated coronary calcium scoring using deep learning with multicenter external validation.npj Digit. Medicine4 (2021)
• 
  [c11]
  Saahil Jain,Akshay Smit,Steven Q. H. Truong,Chanh D. T. Nguyen,Minh-Thanh Huynh,Mudit Jain,Victoria A. Young,Andrew Y. Ng,Matthew P. Lungren,Pranav Rajpurkar:
  VisualCheXbert: addressing the discrepancy between radiology report labels and image labels.CHIL2021:105-115
• 
  [c10]
  Pranav Rajpurkar,Anirudh Joshi,Anuj Pareek,Andrew Y. Ng,Matthew P. Lungren:
  CheXternal: generalization of deep learning models for chest X-ray interpretation to photos of chest X-rays and external clinical settings.CHIL2021:125-132
• 
  [c9]
  Shih-Cheng Huang,Liyue Shen,Matthew P. Lungren,Serena Yeung:
  GLoRIA: A Multimodal Global-Local Representation Learning Framework for Label-efficient Medical Image Recognition.ICCV2021:3922-3931
• 
  [c8]
  Joseph Paul Cohen,Rupert Brooks,Sovann En,Evan Zucker,Anuj Pareek,Matthew P. Lungren,Akshay Chaudhari:
  Gifsplanation via Latent Shift: A Simple Autoencoder Approach to Counterfactual Generation for Chest X-rays.MIDL2021:74-104
• 
  [c7]
  Saahil Jain,Ashwin Agrawal,Adriel Saporta,Steven Q. H. Truong,Du Nguyen Duong,Tan Bui,Pierre J. Chambon,Yuhao Zhang,Matthew P. Lungren,Andrew Y. Ng,Curtis P. Langlotz,Pranav Rajpurkar:
  RadGraph: Extracting Clinical Entities and Relations from Radiology Reports.NeurIPS Datasets and Benchmarks2021
• 
  [i26]
  Pranav Rajpurkar,Anirudh Joshi,Anuj Pareek,Andrew Y. Ng,Matthew P. Lungren:
  CheXternal: Generalization of Deep Learning Models for Chest X-ray Interpretation to Photos of Chest X-rays and External Clinical Settings.CoRRabs/2102.08660 (2021)
• 
  [i25]
  Joseph Paul Cohen,Rupert Brooks,Sovann En,Evan Zucker,Anuj Pareek,Matthew P. Lungren,Akshay Chaudhari:
  Gifsplanation via Latent Shift: A Simple Autoencoder Approach to Progressive Exaggeration on Chest X-rays.CoRRabs/2102.09475 (2021)
• 
  [i24]
  Saahil Jain,Akshay Smit,Steven Q. H. Truong,Chanh D. T. Nguyen,Minh-Thanh Huynh,Mudit Jain,Victoria A. Young,Andrew Y. Ng,Matthew P. Lungren,Pranav Rajpurkar:
  VisualCheXbert: Addressing the Discrepancy Between Radiology Report Labels and Image Labels.CoRRabs/2102.11467 (2021)
• 
  [i23]
  Christian Garbin,Pranav Rajpurkar,Jeremy Irvin,Matthew P. Lungren,Oge Marques:
  Structured dataset documentation: a datasheet for CheXpert.CoRRabs/2105.03020 (2021)
• 
  [i22]
  Grant Duffy,Paul P. Cheng,Neal Yuan,Bryan He,Alan C. Kwan,Matthew J. Shun-Shin,Kevin M. Alexander,Joseph Ebinger,Matthew P. Lungren,Florian Rader,David H. Liang,Ingela Schnittger,Euan A. Ashley,James Y. Zou,Jignesh Patel,Ronald Witteles,Susan Cheng,David Ouyang:
  High-Throughput Precision Phenotyping of Left Ventricular Hypertrophy with Cardiovascular Deep Learning.CoRRabs/2106.12511 (2021)
• 
  [i21]
  Saahil Jain,Ashwin Agrawal,Adriel Saporta,Steven Q. H. Truong,Du Nguyen Duong,Tan Bui,Pierre J. Chambon,Yuhao Zhang,Matthew P. Lungren,Andrew Y. Ng,Curtis P. Langlotz,Pranav Rajpurkar:
  RadGraph: Extracting Clinical Entities and Relations from Radiology Reports.CoRRabs/2106.14463 (2021)
• 
  [i20]
  Arjun Soin,Pratik Bhatu,Rohit Takhar,Nishanth Chandran,Divya Gupta,Javier Alvarez-Valle,Rahul Sharma,Vidur Mahajan,Matthew P. Lungren:
  Production-level Open Source Privacy Preserving Inference in Medical Imaging.CoRRabs/2107.10230 (2021)
• 
  [i19]
  Imon Banerjee,Ananth Reddy Bhimireddy,John L. Burns,Leo Anthony Celi,Li-Ching Chen,Ramon Correa,Natalie Dullerud,Marzyeh Ghassemi,Shih-Cheng Huang,Po-Chih Kuo,Matthew P. Lungren,Lyle J. Palmer,Brandon J. Price,Saptarshi Purkayastha,Ayis Pyrros,Luke Oakden-Rayner,Chima Okechukwu,Laleh Seyyed-Kalantari,Hari Trivedi,Ryan Wang,Zachary Zaiman,Haoran Zhang,Judy W. Gichoya:
  Reading Race: AI Recognises Patient's Racial Identity In Medical Images.CoRRabs/2107.10356 (2021)
• 
  [i18]
  Anirudh Joshi,Sabri Eyuboglu,Shih-Cheng Huang,Jared Dunnmon,Arjun Soin,Guido A. Davidzon,Akshay Chaudhari,Matthew P. Lungren:
  OncoNet: Weakly Supervised Siamese Network to automate cancer treatment response assessment between longitudinal FDG PET/CT examinations.CoRRabs/2108.02016 (2021)
• 
  [i17]
  Michael Fitzke,Derick Whitley,Wilson Yau,Fernando Rodrigues Jr,Vladimir Fadeev,Cindy Bacmeister,Chris Carter,Jeffrey Edwards,Matthew P. Lungren,Mark Parkinson:
  OncoPetNet: A Deep Learning based AI system for mitotic figure counting on H&E stained whole slide digital images in a large veterinary diagnostic lab setting.CoRRabs/2108.07856 (2021)
• 
  [i16]
  Melanie Bernhardt,Daniel C. Castro,Ryutaro Tanno,Anton Schwaighofer,Kerem Can Tezcan,Miguel Monteiro,Shruthi Bannur,Matthew P. Lungren,Aditya V. Nori,Ben Glocker,Javier Alvarez-Valle,Ozan Oktay:
  Active label cleaning: Improving dataset quality under resource constraints.CoRRabs/2109.00574 (2021)
• 
  [i15]
  Ruiyang Zhao,Burhaneddin Yaman,Yuxin Zhang,Russell Stewart,Austin Dixon,Florian Knoll,Zhengnan Huang,Yvonne W. Lui,Michael S. Hansen,Matthew P. Lungren:
  fastMRI+: Clinical Pathology Annotations for Knee and Brain Fully Sampled Multi-Coil MRI Data.CoRRabs/2109.03812 (2021)
• 
  [i14]
  Ruiyang Zhao,Yuxin Zhang,Burhaneddin Yaman,Matthew P. Lungren,Michael S. Hansen:
  End-to-End AI-based MRI Reconstruction and Lesion Detection Pipeline for Evaluation of Deep Learning Image Reconstruction.CoRRabs/2109.11524 (2021)
• 
  [i13]
  Joseph Paul Cohen,Joseph D. Viviano,Paul Bertin,Paul Morrison,Parsa Torabian,Matteo Guarrera,Matthew P. Lungren,Akshay Chaudhari,Rupert Brooks,Mohammad Hashir,Hadrien Bertrand:
  TorchXRayVision: A library of chest X-ray datasets and models.CoRRabs/2111.00595 (2021)
• 
  [i12]
  Michael Fitzke,Conrad Stack,Andre Dourson,Rodrigo M. B. Santana,Diane Wilson,Lisa Ziemer,Arjun Soin,Matthew P. Lungren,Paul Fisher,Mark Parkinson:
  RapidRead: Global Deployment of State-of-the-art Radiology AI for a Large Veterinary Teleradiology Practice.CoRRabs/2111.08165 (2021)
• 
  [i11]
  Yuyin Zhou,Shih-Cheng Huang,Jason Alan Fries,Alaa Youssef,Timothy J. Amrhein,Marcello Chang,Imon Banerjee,Daniel L. Rubin,Lei Xing,Nigam Shah,Matthew P. Lungren:
  RadFusion: Benchmarking Performance and Fairness for Multimodal Pulmonary Embolism Detection from CT and EHR.CoRRabs/2111.11665 (2021)
• 2020
• 
  [j10]
  Shih-Cheng Huang,Tanay Kothari,Imon Banerjee,Christopher Chute,Robyn L. Ball,Norah Borus,Andrew Huang,Bhavik N. Patel,Pranav Rajpurkar,Jeremy Irvin,Jared Dunnmon,Joseph Bledsoe,Katie S. Shpanskaya,Abhay Dhaliwal,Roham Zamanian,Andrew Y. Ng,Matthew P. Lungren:
  PENet - a scalable deep-learning model for automated diagnosis of pulmonary embolism using volumetric CT imaging.npj Digit. Medicine3 (2020)
• 
  [j9]
  Shih-Cheng Huang,Tanay Kothari,Imon Banerjee,Christopher Chute,Robyn L. Ball,Norah Borus,Andrew Huang,Bhavik N. Patel,Pranav Rajpurkar,Jeremy Irvin,Jared Dunnmon,Joseph Bledsoe,Katie S. Shpanskaya,Abhay Dhaliwal,Roham Zamanian,Andrew Y. Ng,Matthew P. Lungren:
  Author Correction: PENet - a scalable deep-learning model for automated diagnosis of pulmonary embolism using volumetric CT imaging.npj Digit. Medicine3 (2020)
• 
  [j8]
  Shih-Cheng Huang,Anuj Pareek,Saeed Seyyedi,Imon Banerjee,Matthew P. Lungren:
  Fusion of medical imaging and electronic health records using deep learning: a systematic review and implementation guidelines.npj Digit. Medicine3 (2020)
• 
  [j7]
  Pranav Rajpurkar,Chloe P. O'Connell,Amit Schechter,Nishit Asnani,Jason Li,Amirhossein Kiani,Robyn L. Ball,Marc Mendelson,Gary Maartens,Daniël J. van Hoving,Rulan Griesel,Andrew Y. Ng,Tom H. Boyles,Matthew P. Lungren:
  CheXaid: deep learning assistance for physician diagnosis of tuberculosis using chest x-rays in patients with HIV.npj Digit. Medicine3 (2020)
• 
  [j6]
  Jared A. Dunnmon,Alexander J. Ratner,Khaled Saab,Nishith Khandwala,Matthew Markert,Hersh Sagreiya,Roger E. Goldman,Christopher Lee-Messer,Matthew P. Lungren,Daniel L. Rubin,Christopher Ré:
  Cross-Modal Data Programming Enables Rapid Medical Machine Learning.Patterns1(2):100019 (2020)
• 
  [c6]
  Akshay Smit,Saahil Jain,Pranav Rajpurkar,Anuj Pareek,Andrew Y. Ng,Matthew P. Lungren:
  Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT.EMNLP (1)2020:1500-1519
• 
  [c5]
  Nick A. Phillips,Pranav Rajpurkar,Mark Sabini,Rayan Krishnan,Sharon Zhou,Anuj Pareek,Nguyet Minh Phu,Chris Wang,Mudit Jain,Du Nguyen Duong,Steven Q. H. Truong,Andrew Y. Ng,Matthew P. Lungren:
  CheXphoto: 10, 000+ Photos and Transformations of Chest X-rays for Benchmarking Deep Learning Robustness.ML4H@NeurIPS2020:318-327
• 
  [i10]
  Pranav Rajpurkar,Anirudh Joshi,Anuj Pareek,Phil Chen,Amirhossein Kiani,Jeremy Irvin,Andrew Y. Ng,Matthew P. Lungren:
  CheXpedition: Investigating Generalization Challenges for Translation of Chest X-Ray Algorithms to the Clinical Setting.CoRRabs/2002.11379 (2020)
• 
  [i9]
  Sarah M. Hooper,Jared A. Dunnmon,Matthew P. Lungren,Sanjiv Sam Gambhir,Christopher Ré,Adam S. Wang,Bhavik N. Patel:
  Assessing Robustness to Noise: Low-Cost Head CT Triage.CoRRabs/2003.07977 (2020)
• 
  [i8]
  Akshay Smit,Saahil Jain,Pranav Rajpurkar,Anuj Pareek,Andrew Y. Ng,Matthew P. Lungren:
  CheXbert: Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT.CoRRabs/2004.09167 (2020)
• 
  [i7]
  Nick A. Phillips,Pranav Rajpurkar,Mark Sabini,Rayan Krishnan,Sharon Zhou,Anuj Pareek,Nguyet Minh Phu,Chris Wang,Andrew Y. Ng,Matthew P. Lungren:
  CheXphoto: 10, 000+ Smartphone Photos and Synthetic Photographic Transformations of Chest X-rays for Benchmarking Deep Learning Robustness.CoRRabs/2007.06199 (2020)
• 
  [i6]
  Pranav Rajpurkar,Anirudh Joshi,Anuj Pareek,Jeremy Irvin,Andrew Y. Ng,Matthew P. Lungren:
  CheXphotogenic: Generalization of Deep Learning Models for Chest X-ray Interpretation to Photos of Chest X-rays.CoRRabs/2011.06129 (2020)

• 2019
• 
  [j5]
  Imon Banerjee,Yuan Ling,Matthew C. Chen,Sadid A. Hasan,Curtis P. Langlotz,Nathaniel Moradzadeh,Brian E. Chapman,Timothy Amrhein,David A. Mong,Daniel L. Rubin,Oladimeji Farri,Matthew P. Lungren:
  Comparative effectiveness of convolutional neural network (CNN) and recurrent neural network (RNN) architectures for radiology text report classification.Artif. Intell. Medicine97:79-88 (2019)
• 
  [j4]
  Maya Varma,Mandy Lu,Rachel Gardner,Jared Dunnmon,Nishith Khandwala,Pranav Rajpurkar,Jin Long,Christopher Beaulieu,Katie S. Shpanskaya,Li Fei-Fei,Matthew P. Lungren,Bhavik N. Patel:
  Automated abnormality detection in lower extremity radiographs using deep learning.Nat. Mach. Intell.1(12):578-583 (2019)
• 
  [j3]
  Bhavik N. Patel,Louis B. Rosenberg,Gregg Willcox,David Baltaxe,Mimi Lyons,Jeremy Irvin,Pranav Rajpurkar,Timothy Amrhein,Rajan Gupta,Safwan Halabi,Curtis P. Langlotz,Edward Lo,Joseph Mammarappallil,A. J. Mariano,Geoffrey Riley,Jayne Seekins,Luyao Shen,Evan Zucker,Matthew P. Lungren:
  Human-machine partnership with artificial intelligence for chest radiograph diagnosis.npj Digit. Medicine2 (2019)
• 
  [j2]
  Bhavik N. Patel,Louis B. Rosenberg,Gregg Willcox,David Baltaxe,Mimi Lyons,Jeremy Irvin,Pranav Rajpurkar,Timothy Amrhein,Rajan Gupta,Safwan Halabi,Curtis P. Langlotz,Edward Lo,Joseph Mammarappallil,A. J. Mariano,Geoffrey Riley,Jayne Seekins,Luyao Shen,Evan Zucker,Matthew P. Lungren:
  Author Correction: Human-machine partnership with artificial intelligence for chest radiograph diagnosis.npj Digit. Medicine2 (2019)
• 
  [c4]
  Jeremy Irvin,Pranav Rajpurkar,Michael Ko,Yifan Yu,Silviana Ciurea-Ilcus,Christopher Chute,Henrik Marklund,Behzad Haghgoo,Robyn L. Ball,Katie S. Shpanskaya,Jayne Seekins,David A. Mong,Safwan S. Halabi,Jesse K. Sandberg,Ricky Jones,David B. Larson,Curtis P. Langlotz,Bhavik N. Patel,Matthew P. Lungren,Andrew Y. Ng:
  CheXpert: A Large Chest Radiograph Dataset with Uncertainty Labels and Expert Comparison.AAAI2019:590-597
• 
  [c3]
  Imon Banerjee,Miji Sofela,Timothy Amrhein,Daniel L. Rubin,Roham Zamanian,Matthew P. Lungren:
  Prediction of Imaging Outcomes from Electronic Health Records: Pulmonary Embolism Case-Study.AMIA2019
• 
  [i5]
  Jeremy Irvin,Pranav Rajpurkar,Michael Ko,Yifan Yu,Silviana Ciurea-Ilcus,Christopher Chute,Henrik Marklund,Behzad Haghgoo,Robyn L. Ball,Katie S. Shpanskaya,Jayne Seekins,David A. Mong,Safwan S. Halabi,Jesse K. Sandberg,Ricky Jones,David B. Larson,Curtis P. Langlotz,Bhavik N. Patel,Matthew P. Lungren,Andrew Y. Ng:
  CheXpert: A Large Chest Radiograph Dataset with Uncertainty Labels and Expert Comparison.CoRRabs/1901.07031 (2019)
• 
  [i4]
  Alistair E. W. Johnson,Tom J. Pollard,Seth J. Berkowitz,Nathaniel R. Greenbaum,Matthew P. Lungren,Chih-ying Deng,Roger G. Mark,Steven Horng:
  MIMIC-CXR: A large publicly available database of labeled chest radiographs.CoRRabs/1901.07042 (2019)
• 
  [i3]
  Jared Dunnmon,Alexander Ratner,Nishith Khandwala,Khaled Saab,Matthew Markert,Hersh Sagreiya,Roger E. Goldman,Christopher Lee-Messer,Matthew P. Lungren,Daniel L. Rubin,Christopher Ré:
  Cross-Modal Data Programming Enables Rapid Medical Machine Learning.CoRRabs/1903.11101 (2019)
• 2018
• 
  [j1]
  Imon Banerjee,Matthew C. Chen,Matthew P. Lungren,Daniel L. Rubin:
  Radiology report annotation using intelligent word embeddings: Applied to multi-institutional chest CT cohort.J. Biomed. Informatics77:11-20 (2018)
• 
  [c2]
  Sadid A. Hasan,Yuan Ling,Oladimeji Farri,Joey Liu,Henning Müller,Matthew P. Lungren:
  Overview of ImageCLEF 2018 Medical Domain Visual Question Answering Task.CLEF (Working Notes)2018
• 
  [c1]
  Bogdan Ionescu,Henning Müller,Mauricio Villegas,Alba Garcia Seco de Herrera,Carsten Eickhoff,Vincent Andrearczyk,Yashin Dicente Cid,Vitali Liauchuk,Vassili Kovalev,Sadid A. Hasan,Yuan Ling,Oladimeji Farri,Joey Liu,Matthew P. Lungren,Duc-Tien Dang-Nguyen,Luca Piras,Michael Riegler,Liting Zhou,Mathias Lux,Cathal Gurrin:
  Overview of ImageCLEF 2018: Challenges, Datasets and Evaluation.CLEF2018:309-334
• 2017
• 
  [i2]
  Pranav Rajpurkar,Jeremy Irvin,Kaylie Zhu,Brandon Yang,Hershel Mehta,Tony Duan,Daisy Yi Ding,Aarti Bagul,Curtis P. Langlotz,Katie S. Shpanskaya,Matthew P. Lungren,Andrew Y. Ng:
  CheXNet: Radiologist-Level Pneumonia Detection on Chest X-Rays with Deep Learning.CoRRabs/1711.05225 (2017)
• 
  [i1]
  Pranav Rajpurkar,Jeremy Irvin,Aarti Bagul,Daisy Yi Ding,Tony Duan,Hershel Mehta,Brandon Yang,Kaylie Zhu,Dillon Laird,Robyn L. Ball,Curtis P. Langlotz,Katie S. Shpanskaya,Matthew P. Lungren,Andrew Y. Ng:
  MURA Dataset: Towards Radiologist-Level Abnormality Detection in Musculoskeletal Radiographs.CoRRabs/1712.06957 (2017)