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(read more) BMC Bioinformatics, Volume 10 - Supplements export records of this page
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Volume 10, Number S-1, 2009 Selected papers from the Seventh Asia-Pacific Bioinformatics Conference (APBC 2009)
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Michael Q. Zhang Michael S. Waterman Xuegong Zhang The Seventh Asia Pacific Bioinformatics Conference (APBC2009). export record
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journals/bmcbi/WarrenS09a share record
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Robert Warren David Sankoff Genome aliquoting with double cut and join. share record
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G. X. Yu PathogenicBacillus anthracis in the progressive gene losses and gains in adaptive evolution. share record
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Chin-Hsien Tai James J. Vincent Changhoon Kim Byungkook Lee SE: an algorithm for deriving sequence alignment from a pair of superimposed structures. share record
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Guan Ning Lin Zhipeng Cai Guohui Lin Sounak Chakraborty Dong Xu ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets. export record
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Krister M. Swenson Yokuki To Jijun Tang Bernard M. E. Moret Maximum independent sets of commuting and noninterfering inversions. export record
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Krister M. Swenson Bernard M. E. Moret Inversion-based genomic signatures. share record
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Harris T. Lin J. Gordon Burleigh Oliver Eulenstein Triplet supertree heuristics for the tree of life. share record
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Martin Bader Sorting by reversals, block interchanges, tandem duplications, and deletions. export record
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journals/bmcbi/PapamichailP09 share record
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Dimitrios P. Papamichail Georgios P. Papamichail Improved algorithms for approximate string matching (extended abstract). share record
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Feng Yue Jian Shi Jijun Tang Simultaneous phylogeny reconstruction and multiple sequence alignment. export record
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journals/bmcbi/HusonRMAS09 share record
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Daniel H. Huson Daniel C. Richter Suparna Mitra Alexander F. Auch Stephan C. Schuster Methods for comparative metagenomics. share record
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Chengpeng Bi DNA motif alignment by evolving a population of Markov chains. export record
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journals/bmcbi/JacksonSA09 share record
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Benjamin G. Jackson Patrick S. Schnable Srinivas Aluru Parallel short sequence assembly of transcriptomes. share record
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Francis Y. L. Chin Henry C. M. Leung Wei-Lin Li Siu-Ming Yiu Finding optimal threshold for correction error reads in DNA assembling. export record
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Mohammad Sajjad Hossain Navid Azimi Steven Skiena Crystallizing short-read assemblies around seeds. share record
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Wendi Wang Peiheng Zhang Xinchun Liu Short read DNA fragment anchoring algorithm. export record
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journals/bmcbi/ZhengHZQQZD09 share record
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Hao Zheng Xingyi Hang Ji Zhu Minping Qian Wubin Qu Chenggang Zhang Minghua Deng REMAS: a new regression model to identify alternative splicing events from exon array data. export record
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Md. Rafiul Hassan M. Maruf Hossain James Bailey Geoff MacIntyre Joshua Wing Kei Ho Kotagiri Ramamohanarao A voting approach to identify a small number of highly predictive genes using multiple classifiers. share record
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Martin H. van Vliet Lodewyk F. A. Wessels Marcel J. T. Reinders Knowledge driven decomposition of tumor expression profiles. share record
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Yanni Zhu Xiaotong Shen Wei Pan Network-based support vector machine for classification of microarray samples. export record
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Fan Yang Hua-zhen Wang Hong Mi Cheng-de Lin Wei-wen Cai Using random forest for reliable classification and cost-sensitive learning for medical diagnosis. share record
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Yinglei Lai Sarah E. Eckenrode Jin-Xiong She A statistical framework for integrating two microarray data sets in differential expression analysis. export record
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Reija Autio Sami Kilpinen Matti Saarela Olli-P. Kallioniemi Sampsa Hautaniemi Jaakko Astola Comparison of Affymetrix data normalization methods using 6, 926 experiments across five array generations. share record
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Chun-Chi Liu Jianjun Hu Mrinal Kalakrishnan Haiyan Huang Xianghong Jasmine Zhou Integrative disease classification based on cross-platform microarray data. share record
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Wensheng Zhang Hong-Bin Fang Jiuzhou Song Principal component tests: applied to temporal gene expression data. share record
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Smitha Dharan Achuthsankar S. Nair Biclustering of gene expression data using reactive greedy randomized adaptive search procedure. export record
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Corinna Kolárik Roman Klinger Martin Hofmann-Apitius Identification of histone modifications in biomedical text for supporting epigenomic research. export record
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Quan Wang Lin Wan Dayong Li Lihuang Zhu Minping Qian Minghua Deng Searching for bidirectional promoters inArabidopsis thaliana . export record
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journals/bmcbi/SunBSFDLVMM09 share record
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Hong Sun Tijl De Bie Valerie Storms Qiang Fu Thomas Dhollander Karen Lemmens Annemieke Verstuyf Bart De Moor Kathleen Marchal ModuleDigger: an itemset mining framework for the detection ofcis -regulatory modules. export record
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Zhiming Dai Xianhua Dai Qian Xiang Jihua Feng Yangyang Deng Jiang Wang Caisheng He Transcriptional interaction-assisted identification of dynamic nucleosome positioning. share record
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Brian J. Parker Jiayu Wen Predicting microRNA targets in time-series microarray experiments via functional data analysis. export record
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Chi Yu Chan C. Steven Carmack Dang D. Long Anil Maliyekkel Yu Shao Igor B. Roninson Ye Ding A structural interpretation of the effect of GC-content on efficiency of RNA interference. share record
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Je-Gun Joung Zhangjun Fei Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information. share record
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Sabah Kadri Veronica F. Hinman Panayiotis V. Benos HHMMiR: efficientde novo prediction of microRNAs using hierarchical hidden Markov models. export record
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Dandan Song Yang Yang Bin Yu Binglian Zheng Zhidong Deng Bao-Liang Lu Xuemei Chen Tao Jiang Computational prediction of novel non-coding RNAs inArabidopsis thaliana . export record
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Fei Xia Yong Dou Xingming Zhou Xuejun Yang Jiaqing Xu Yang Zhang Fine-grained parallel RNAalifold algorithm for RNA secondary structure prediction on FPGA. export record
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Unyanee Poolsap Yuki Kato Tatsuya Akutsu Prediction of RNA secondary structure with pseudoknots using integer programming. share record
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Fenix W. D. Huang Linda Y. M. Li Christian M. Reidys Sequence-structure relations of pseudoknot RNA. share record
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Weitao Sun Jing He Reduction of the secondary structure topological space through direct estimation of the contact energy formed by the secondary structures. share record
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Jhang-Wei Huang Chwan-Chuen King Jinn-Moon Yang Co-evolution positions and rules for antigenic variants of human influenza A/H3N2 viruses. share record
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Pengfei Han Xiuzhen Zhang Zhi-Ping Feng Predicting disordered regions in proteins using the profiles of amino acid indices. share record
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Thai Quang Tung Doheon Lee A method to improve protein subcellular localization prediction by integrating various biological data sources. share record
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Liling Zhao Jihua Wang Xianghua Dou Zanxia Cao Studying the unfolding process of protein G and protein L under physical property space. share record
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Jian Tian Ningfeng Wu Jun Guo Yunliu Fan Prediction of amyloid fibril-forming segments based on a support vector machine. share record
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Yi Jia Jun Huan Vincent Buhr Jintao Zhang Leonidas N. Carayannopoulos Towards comprehensive structural motif mining for better fold annotation in the "twilight zone" of sequence dissimilarity. share record
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Qian Xu Derek Hao Hu Hong Xue Weichuan Yu Qiang Yang Semi-supervised protein subcellular localization. export record
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journals/bmcbi/PhakthanakanokRKSWP09 share record
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Krongsakda Phakthanakanok Khanok Ratanakhanokchai Khin Lay Kyu Pornthep Sompornpisut Aaron Watts Surapong Pinitglang A computational analysis of SARS cysteine proteinase-octapeptide substrate interaction: implication for structure and active site binding mechanism. share record
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An-Min Zou Fang-Xiang Wu Jiarui Ding Guy G. Poirier Quality assessment of tandem mass spectra using support vector machine (SVM). export record
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journals/bmcbi/FuJLWYCLXWLWSGQH09 share record
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Yan Fu Wei Jia Zhuang Lu Haipeng Wang Zuofei Yuan Hao Chi You Li Liyun Xiu Wenping Wang Chao Liu Leheng Wang Ruixiang Sun Wen Gao Xiaohong Qian Si-Min He Efficient discovery of abundant post-translational modifications and spectral pairs using peptide mass and retention time differences. export record
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journals/bmcbi/MeulemanEGWR09 share record
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Wouter Meuleman Judith Y. M. N. Engwegen Marie-Christine W. Gast Lodewyk F. A. Wessels Marcel J. T. Reinders Analysis of mass spectrometry data using sub-spectra. export record
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journals/bmcbi/SuzukiSKS09 share record
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Taiji Suzuki Masashi Sugiyama Takafumi Kanamori Jun Sese Mutual information estimation reveals global associations between stimuli and biological processes. share record
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Hong-Hee Won Inho Park Eunjung Lee Jong-Won Kim Doheon Lee Comparative analysis of the JAK/STAT signaling through erythropoietin receptor and thrombopoietin receptor using a systems approach. share record
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Dongxiao Zhu Semi-supervised gene shaving method for predicting low variation biological pathways from genome-wide data. share record
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Hongning Wang Minlie Huang Xiaoyan Zhu Extract interaction detection methods from the biological literature. export record
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journals/bmcbi/HaoZPTGWZL09 share record
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Pei Hao Siyuan Zheng Jie Ping Kang Tu Christian Gieger Rui Wang-Sattler Yang Zhong Yixue Li Human gene expression sensitivity according to large scale meta-analysis. share record
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Jisu Kim De-Shuang Huang Kyungsook Han Finding motif pairs in the interactions between heterogeneous proteins via bootstrapping and boosting. share record
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Yanping Xi Yi-Ping Phoebe Chen Ming Cao Weirong Wang Fei Wang Analysis on relationship between extreme pathways and correlated reaction sets. share record
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Gunnar W. Klau A new graph-based method for pairwise global network alignment. share record
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Kelvin Xi Zhang B. F. Francis Ouellette GAIA: a gram-based interaction analysis tool - an approach for identifying interacting domains in yeast. export record
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journals/bmcbi/BockerBK09 share record
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Sebastian Böcker Sebastian Briesemeister Gunnar W. Klau On optimal comparability editing with applications to molecular diagnostics. share record
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Zixiang Xu Xiao Sun Shihai Yu Genome-scale analysis to the impact of gene deletion on the metabolism ofE. coli : constraint-based simulation approach. share record
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Jing Chen Guangcheng Xi An unsupervised partition method based on association delineated revised mutual information. share record
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Tomasz Gambin Krzysztof Walczak A new classification method using array Comparative Genome Hybridization data, based on the concept of Limited Jumping Emerging Patterns. export record
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Rui Jiang Wanwan Tang Xuebing Wu Wenhui Fu A random forest approach to the detection of epistatic interactions in case-control studies. export record
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Jan Freudenberg Mingyi Wang Yaning Yang Wentian Li Partial correlation analysis indicates causal relationships between GC-content, exon density and recombination rate in the human genome. share record
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Wentian Li Annette Lee Peter K. Gregersen Copy-number-variation and copy-number-alteration region detection by cumulative plots. export record
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Wenhui Huang Pengyuan Wang Zhen Liu Liqing Zhang Identifying disease associations via genome-wide association studies. export record
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journals/bmcbi/TeberLBFW09 share record
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Erdahl T. Teber Jason Y. Liu Sara Ballouz Diane Fatkin Merridee A. Wouters Comparison of automated candidate gene prediction systems using genes implicated in type 2 diabetes by genome-wide association studies. export record
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journals/bmcbi/AutioSJHA09 share record
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Reija Autio Matti Saarela Anna-Kaarina Järvinen Sampsa Hautaniemi Jaakko Astola Advanced analysis and visualization of gene copy number and expression data. share record
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Jun Wang Maozu Guo Chunyu Wang CGTS: a site-clustering graph based tagSNP selection algorithm in genotype data. export record
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journals/bmcbi/ParidaJMCBC09 share record
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Laxmi Parida Asif Javed Marta Melé Francesc Calafell Jaume Bertranpetit Minimizing recombinations in consensus networks for phylogeographic studies. share record
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Chih Lee Ali Abdool Chun-Hsi Huang PCA-based population structure inference with generic clustering algorithms. export record
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journals/bmcbi/BesenbacherPM09 share record
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Søren Besenbacher Christian N. S. Pedersen Thomas Mailund A fast algorithm for genome-wide haplotype pattern mining. share record
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Quan Long Qingrun Zhang Jurg Ott Detecting disease-associated genotype patterns. Volume 10, Number S-2, 2009 Selected Proceedings of the First Summit on Translational Bioinformatics 2008
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Atul J. Butte Indra Neil Sarkar Marco Ramoni Yves A. Lussier Olga G. Troyanskaya Selected proceedings of the First Summit on Translational Bioinformatics 2008. export record
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journals/bmcbi/ShahJCBCM09 share record
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Nigam H. Shah Clément Jonquet Annie P. Chiang Atul J. Butte Rong Chen Mark A. Musen Ontology-driven indexing of public datasets for translational bioinformatics. export record
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journals/bmcbi/MirhajiZVBZS09 share record
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Parsa Mirhaji Min Zhu Mattew Vagnoni Elmer V. Bernstam Jiajie Zhang Jack W. Smith Ontology driven integration platform for clinical and translational research. export record
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journals/bmcbi/RubinTHMK09 share record
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Daniel L. Rubin Ion-Florin Talos Michael Halle Mark A. Musen Ron Kikinis Computational neuroanatomy: ontology-based representation of neural components and connectivity. share record
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Isaac Kunz Ming-Chin Lin Lewis J. Frey Metadata mapping and reuse in caBIGTM . share record
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Jianji Yang Aaron M. Cohen William R. Hersh Evaluation of a gene information summarization system by users during the analysis process of microarray datasets. share record
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Yael Garten Russ B. Altman Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text. export record
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journals/bmcbi/MaloviniNFPB09 share record
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Alberto Malovini Angelo Nuzzo Fulvia Ferrazzi Annibale A. Puca Riccardo Bellazzi Phenotype forecasting with SNPs data through gene-based Bayesian networks. export record
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Lee T. Sam Eneida A. Mendonça Jianrong Li Judith A. Blake Carol Friedman Yves A. Lussier PhenoGO: an integrated resource for the multiscale mining of clinical and biological data. export record
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Peter L. Elkin Mark S. Tuttle Brett E. Trusko Steven H. Brown BioProspecting: novel marker discovery obtained by mining the bibleome. export record
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journals/bmcbi/SintchenkoGCC09 share record
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Vitali Sintchenko Blanca Gallego Grace Chung Enrico W. Coiera Towards bioinformatics assisted infectious disease control. share record
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Yang Liu Lee T. Sam Jianrong Li Yves A. Lussier Robust methods for accurate diagnosis using pan-microbiological oligonucleotide microarrays. export record
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Hannah J. Tipney Sonia M. Leach Weiguo Feng Richard A. Spritz Trevor Williams Lawrence Hunter Leveraging existing biological knowledge in the identification of candidate genes for facial dysmorphology. share record
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Benjamin J. Keller Richard C. McEachin Identifying hypothetical genetic influences on complex disease phenotypes. share record
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Yueyi I. Liu Paul H. Wise Atul J. Butte The "etiome": identification and clustering of human disease etiological factors. Volume 10, Number S-3, 2009 Second International Workshop on Data and Text Mining in Bioinformatics (DTMBio) 2008
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Ankit Agrawal Xiaoqiu Huang Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty. share record
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Sangwoo Kim Doheon Lee Mining metastasis related genes by primary-secondary tumor comparisons from large-scale databases. export record
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Jay Urbain Ophir Frieder Nazli Goharian Passage relevance models for genomics search. share record
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Weisi Duan Min Song Alexander Yates Fast max-margin clustering for unsupervised word sense disambiguation in biomedical texts. export record
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Jorge Amigo Christopher Phillips Antonio Salas Ángel Carracedo Viability of in-house datamarting approaches for population genetics analysis of SNP genotypes. share record
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Hojung Nam Ki Young Lee Doheon Lee Identification of temporal association rules from time-series microarray data sets. Volume 10, Number S-4, 2009 Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM) 2008
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journals/bmcbi/HarariVRSHGZ09 share record
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Oscar Harari Coral del Val Rocío Romero-Záliz Dongwoo Shin Henry Huang Eduardo A. Groisman Igor Zwir Identifying promoter features of co-regulated genes with similar network motifs. share record
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Pavel P. Kuksa Pai-Hsi Huang Vladimir Pavlovic Efficient use of unlabeled data for protein sequence classification: a comparative study. share record
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Seung-Jin Sul Suzanne J. Matthews Tiffani L. Williams Using tree diversity to compare phylogenetic heuristics. export record
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Cornelia Caragea Jivko Sinapov Drena Dobbs Vasant G. Honavar Mixture of experts models to exploit global sequence similarity on biomolecular sequence labeling. share record
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Xiaotong Lin Mei Liu Xue-wen Chen Assessing reliability of protein-protein interactions by integrative analysis of data in model organisms. share record
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Rui-Sheng Wang Guangxu Jin Xiang-Sun Zhang Luonan Chen Modeling post-transcriptional regulation activity of small non-coding RNAs inEscherichia coli . share record
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Jung Hun Oh Jean Gao A kernel-based approach for detecting outliers of high-dimensional biological data. share record
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Feng Luo Bo Li Xiu-Feng Wan Richard H. Scheuermann Core and periphery structures in protein interaction networks. share record
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Junwan Liu Zhoujun Li Xiaohua Hu Yiming Chen Biclustering of microarray data with MOSPO based on crowding distance. share record
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Li An Hongbo M. Xie Mark H. Chin Zoran Obradovic Desmond J. Smith Vasileios Megalooikonomou Analysis of multiplex gene expression maps obtained by voxelation. Volume 10, Number S-5, 2009 Proceedings of the Bio-Ontologies Special Interest Group Workshop 2008:Knowledge in Biology
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Christopher Brewster Simon Jupp Joanne S. Luciano David M. Shotton Robert D. Stevens Ziqi Zhang Issues in learning an ontology from text. export record
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Tim Beck Hugh Morgan Andrew Blake Sara Wells John M. Hancock Ann-Marie Mallon Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data. export record
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journals/bmcbi/ArighiLNBDBSW09 share record
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Cecilia N. Arighi Hongfang Liu Darren A. Natale Winona C. Barker Harold J. Drabkin Judith A. Blake Barry Smith Cathy H. Wu TGF-beta signaling proteins and the Protein Ontology. share record
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Xiaoyan A. Qu Ranga Chandra Gudivada Anil G. Jegga Eric K. Neumann Bruce J. Aronow Inferring novel disease indications for known drugs by semantically linking drug action and disease mechanism relationships. export record
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Robert Hoehndorf Joshua Bacher Michael Backhaus Sergio E. Gregorio Jr. Frank Loebe Kay Prüfer Alexandr Uciteli Johann Visagie Heinrich Herre Janet Kelso BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology. export record
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journals/bmcbi/XuanDMSAWM09 share record
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Weijian Xuan Manhong Dai Barbara Mirel Jean Song Brian D. Athey Stanley J. Watson Fan Meng Open Biomedical Ontology-based Medline exploration. Volume 10, Number S-6, 2009 European Molecular Biology Network (EMBnet) Conference 2008:20th Anniversary Celebration. Leading applications and technologies in bioinformatics
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Domenica D'Elia Andreas Gisel Nils-Einar Eriksson Sophia Kossida Kimmo Mattila Lubos Klucar Erik Bongcam-Rudloff The 20th anniversary of EMBnet: 20 years of bioinformatics for the Life Sciences community. export record
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journals/bmcbi/CreanzaHDMMAP09 share record
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Teresa Maria Creanza David Stephen Horner Annarita D'Addabbo Rosalia Maglietta Flavio Mignone Nicola Ancona Graziano Pesole Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements. export record
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journals/bmcbi/PenelADSDDGP09 share record
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Simon Penel Anne-Muriel Arigon Jean-François Dufayard Anne-Sophie Sertier Vincent Daubin Laurent Duret Manolo Gouy Guy Perrière Databases of homologous gene families for comparative genomics. export record
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journals/bmcbi/SperberLEBB09 share record
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Göran O. Sperber Anders Lövgren Nils-Einar Eriksson Farid Benachenhou Jonas Blomberg RetroTector online, a rational tool for analysis of retroviral elements in small and medium size vertebrate genomic sequences. share record
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Francesco Rubino Marcella Attimonelli RegExpBlasting (REB), a Regular Expression Blasting algorithm based on multiply aligned sequences. export record
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journals/bmcbi/SebestyenNSB09 share record
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Endre Sebestyén Tibor Nagy Sándor Suhai Endre Barta DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes. export record
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Sandra P. Calderon-Copete George Wigger Christof Wunderlin Tobias Schmidheini Joachim Frey Michael A. Quail Laurent Falquet TheMycoplasma conjunctivae genome sequencing, annotation and analysis. share record
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Zhe Li He Zhang Song Ge Xiaocheng Gu Ge Gao Jingchu Luo Expression pattern divergence of duplicated genes in rice. export record
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María José Nueda Patricia Sebastián Sonia Tarazona Francisco García-García Joaquín Dopazo Alberto Ferrer Ana Conesa Functional assessment of time course microarray data. export record
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Ernesto Picardi Flavio Mignone Graziano Pesole EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data. export record
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journals/bmcbi/MoschopoulosPSLK09 share record
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Charalampos N. Moschopoulos Georgios A. Pavlopoulos Reinhard Schneider Spiridon D. Likothanassis Sophia Kossida GIBA: a clustering tool for detecting protein complexes. export record
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journals/bmcbi/TsagkrasoulisZLVBK09 share record
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Dimosthenis Tsagkrasoulis Panagiotis Zerefos George Loudos Antonia Vlahou Marc Baumann Sophia Kossida 'Brukin2D': a 2D visualization and comparison tool for LC-MS data. export record
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Helena Strömbergsson Gerard J. Kleywegt A chemogenomics view on protein-ligand spaces. share record
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Gregory A. C. Singer Mehrdad Hajibabaei iBarcode.org: web-based molecular biodiversity analysis. export record
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journals/bmcbi/SantamariaVPSSS09 share record
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Monica Santamaria Saverio Vicario Graziano Pappadà Gaetano Scioscia Claudio Scazzocchio Cecilia Saccone Towards barcode markers in Fungi: an intron map of Ascomycota mitochondria. export record
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journals/bmcbi/GerdtzenSOARA09 share record
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Ziomara P. Gerdtzen J. Cristian Salgado Axel Osses Juan A. Asenjo Ivan Rapaport Barbara A. Andrews Modeling heterocyst pattern formation in cyanobacteria. export record
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Franck Picard Vincent Miele Jean-Jacques Daudin Ludovic Cottret Stéphane Robin Deciphering the connectivity structure of biological networks using MixNet. export record
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Alvaro Martinez Barrio Erik Lagercrantz Göran O. Sperber Jonas Blomberg Erik Bongcam-Rudloff Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX. export record
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journals/bmcbi/PettiferTMMVKA09 share record
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Steve Pettifer David Thorne Philip McDermott James Marsh Alice Villéger Douglas B. Kell Teresa K. Attwood Visualising biological data: a semantic approach to tool and database integration. export record
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journals/bmcbi/RoubelakisZPMPAK09 share record
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Maria G. Roubelakis Pantelis Zotos Georgios Papachristoudis Ioannis Michalopoulos Kalliopi I. Pappa Nicholas P. Anagnou Sophia Kossida Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application. export record
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Roberto Barbera Giacinto Donvito Alberto Falzone Giuseppe La Rocca Luciano Milanesi Giorgio Pietro Maggi Saverio Vicario The GENIUS Grid Portal and robot certificates: a new tool for e-Science. export record
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journals/bmcbi/MinerviniEVSLPLP09 share record
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Giovanni Minervini Giuseppe Evangelista Laura Villanova Debora Slanzi Davide De Lucrezia Irene Poli Pier Luigi Luisi Fabio Polticelli Massive non-natural proteins structure prediction using grid technologies. export record
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Marcello Castellano Giuseppe Mastronardi Roberto Bellotti Gianfranco Tarricone A bioinformatics knowledge discovery in text application for grid computing. export record
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Vincenzo Lagani Alberto Montesanto Fausta Di Cianni Víctor Moreno Stefano Landi Domenico Conforti Giuseppina Rose Giuseppe Passarino A novel similarity-measure for the analysis of genetic data in complex phenotypes. export record
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Antonio Turi Corrado Loglisci Eliana Salvemini Giorgio Grillo Donato Malerba Domenica D'Elia Computational annotation of UTR cis-regulatory modules through Frequent Pattern Mining. Volume 10, Number S-7, 2009 UT-ORNL-KBRIN Bioinformatics Summit 2009
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Bing Wang Steve Valentine Sriram Raghuraman Manolo Plasencia Xiang Zhang Prediction of peptide drift time in ion mobility-mass spectrometry. share record
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Nishchal K. Verma Pooja Agrawal Yan Cui Fuzzy rule based unsupervised approach for gene saliency. share record
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Sungbo Jung Parallelized pairwise sequence alignment using CUDA on multiple GPUs. export record
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Elissaveta G. Arnaoudova Philip J. Bowens Roger G. Chui Randy D. Dinkins Uljana Hesse Jerzy W. Jaromczyk Mitchell Martin Paul Maynard Neil Moore Christopher L. Schardl Visualizing and sharing results in bioinformatics projects: GBrowse and GenBank exports. share record
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Sujoy Roy Lijing Xu Ramin Homayouni LSI based framework to predict gene regulatory information. export record
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Mohammed Yeasin Haritha Malempati Ramin Homayouni Mohammad S. Sorower A systematic study on latent semantic analysis model parameters for mining biomedical literature. share record
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Ramy K. Aziz Leslie Klis McNeil Reconstructing the virulome of the human pathogenStreptococcus pyogenes using NMPDR subsystems-based annotation. share record
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Heba M. Amin Abdel-Gawad M. Hashem Ramy K. Aziz Bioinformatics determination of ETEC signature genes as potential targets for molecular diagnosis and reverse vaccinology. export record
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journals/bmcbi/KrushkalQBSUJLMPBAL09 share record
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Julia Krushkal Yanhua Qu Peter Brown Sreedhar Sontineni Toshiyuki Ueki Katy Juarez Ching Leang Enrique Merino Jeanette Peeples Jose F. Barbe Ronald M. Adkins Derek R. Lovley Bioinformatic analysis of gene regulation inGeobacter sulfurreducens . export record
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ReddySailaja Marpuri Claire A. Rinehart Comparison of annotation terms between automated and curatedE. coli K12 databases. export record
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journals/bmcbi/ViangteeravatBVHSHM09 share record
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Teeradache Viangteeravat Ian M. Brooks Somchan Vuthipadadon Eunice Y. Huang Ebony Smith Ramin Homayouni Chanchai McDonald Slim-Prim: an integrated data system for clinical and translational research. export record
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Julie B. Schuck Chia-Hui Lin William T. Penberthy Xiaohong Li Nigel G. F. Cooper Michael E. Smith Microarray analysis and quantitative real-time PCR validation of gene expression during auditory hair cell regeneration in zebrafish (Danio rerio ). export record
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Ronald M. Adkins Julia Krushkal Grant Somes John Fain John Morrison Chad Klauser Everett F. Magann Extensive parent-of-origin genetic effects on fetal growth. export record
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Sirshendu Majumdar I. Maria Johnson Gipsy Majumdar William J. Valentine Rajendra Raghow Molecular dissection of cardiac hypertrophy induced by interleukin-18. export record
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journals/bmcbi/KakoolaLCG09 share record
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Dorothy N. Kakoola Nataliya Lenchik Anita Curcio-Brint Ivan Gerling Transcriptional profiling of CD4 T-lymphocytes reveals abnormal gene expression in young prediabetic NOD mice. export record
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Antony T. Athippozhy Liping Huang Tianyong Zhao Clavia Ruth Wooton-Kee Paiboon Jungsuwadee Arnold J. Stromberg Mary Vore Utilizing a mixed model approach to compare the lactating rat transcriptome against age-matched control virgins. share record
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Vinhthuy Phan Motif Tool Manager: a web-based platform for motif discovery. export record
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Jarret Glasscock Ryan Richt Matthew T. Hickenbotham Flipping NextGen: using biological systems to characterize NextGen sequencing technologies. export record
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Eric C. Rouchka Julia Krushkal Proceedings of the Eighth Annual UT-ORNL-KBRIN Bioinformatics Summit 2009. Volume 10, Number S-8, 2009 Proceedings of the European Conference on Computational Biology (ECCB) 2008 Workshop:Annotations, interpretation and management of mutations (AIMM)
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Christopher J. O. Baker Dietrich Rebholz-Schuhmann Between proteins and phenotypes: annotation and interpretation of mutations. 0 export record
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Martin Krallinger José M. G. Izarzugaza Carlos Rodríguez Penagos Alfonso Valencia Extraction of human kinase mutations from literature, databases and genotyping studies. 1 export record
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Süveyda Yeniterzi Osman Ugur Sezerman EnzyMiner: automatic identification of protein level mutations and their impact on target enzymes from PubMed abstracts. 2 export record
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Rainer Winnenburg Conrad Plake Michael Schroeder Improved mutation tagging with gene identifiers applied to membrane protein stability prediction. 3 share record
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Kevin Nagel Antonio Jimeno-Yepes Dietrich Rebholz-Schuhmann Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb. 4 export record
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journals/bmcbi/IzarzugazaBMYCOMV09 share record
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José M. G. Izarzugaza Anja Baresic Lisa E. M. McMillan Corin Yeats Andrew B. Clegg Christine A. Orengo Andrew C. R. Martin Alfonso Valencia An integrated approach to the interpretation of Single Amino Acid Polymorphisms within the framework of CATH and Gene3D. 5 export record
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journals/bmcbi/Bauer-MehrenFRS09 share record
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Anna Bauer-Mehren Laura Inés Furlong Michael Rautschka Ferran Sanz From SNPs to pathways: integration of functional effect of sequence variations on models of cell signalling pathways. 6 export record
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Anshu Bhardwaj Mitali Mukerji Shipra Sharma Jinny Paul Chaitanya S. Gokhale Achal K. Srivastava Shrish Tiwari MtSNPscore: a combined evidence approach for assessing cumulative impact of mitochondrial variations in disease. 7 export record
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Yana Bromberg Burkhard Rost Correlating protein function and stability through the analysis of single amino acid substitutions. 8 export record
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Joke Reumers Joost Schymkowitz Frederic Rousseau Using structural bioinformatics to investigate the impact of non synonymous SNPs and disease mutations: scope and limitations. 9 share record
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Omar Haq Ronald M. Levy Alexandre V. Morozov Michael Andrec Pairwise and higher-order correlations among drug-resistance mutations in HIV-1 subtype B protease. 10 Volume 10, Number S-9, 2009 Proceedings of the 2009 AMIA Summit on Translational Bioinformatics
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Yves A. Lussier Indra Neil Sarkar Selected proceedings of the 2009 Summit on Translational Bioinformatics. 0 share record
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Hsun-Hsien Chang Marco Ramoni Transcriptional network classifiers. 1 share record
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Eunjung Lee Hyunchul Jung Predrag Radivojac Jong-Won Kim Doheon Lee Analysis of AML genes in dysregulated molecular networks. 2 export record
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Suresh K. Bhavnani Felix Eichinger Sebastian Martini Paul Saxman H. V. Jagadish Matthias Kretzler Network analysis of genes regulated in renal diseases: implications for a molecular-based classification. 3 export record
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journals/bmcbi/GrossmanCMB09 share record
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Adam D. Grossman Mitchell J. Cohen Geoffrey T. Manley Atul J. Butte Infection in the intensive care unit alters physiological networks. 4 share record
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Angela K. Dean Stephen E. Harris Ivo Kalajzic Jianhua Ruan A systems biology approach to the identification and analysis of transcriptional regulatory networks in osteocytes. 5 export record
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Xinan Yang Yong Huang James L. Chen Jianming Xie Xiao Sun Yves A. Lussier Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia. 6 export record
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Angel Janevski Sitharthan Kamalakaran Nilanjana Banerjee Vinay Varadan Nevenka Dimitrova PAPAyA: a platform for breast cancer biomarker signature discovery, evaluation and assessment. 7 export record
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Casey Lynnette Overby Peter Tarczy-Hornoch Dina Demner-Fushman The potential for automated question answering in the context of genomic medicine: an assessment of existing resources and properties of answers. 8 export record
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journals/bmcbi/PitzerLHKGO09 share record
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Erik Pitzer Ronilda Lacson Christian Hinske Jihoon Kim Pedro A. F. Galante Lucila Ohno-Machado Towards large-scale sample annotation in gene expression repositories. 9 export record
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journals/bmcbi/LacsonPHGO09 share record
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Ronilda Lacson Erik Pitzer Christian Hinske Pedro A. F. Galante Lucila Ohno-Machado Evaluation of a large-scale biomedical data annotation initiative. 10 share record
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Terry H. Shen Christopher S. Carlson Peter Tarczy-Hornoch Evaluating the accuracy of a functional SNP annotation system. 11 export record
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journals/bmcbi/SouthSJGSCG09 share record
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Brett R. South Shuying Shen Makoto Jones Jennifer H. Garvin Matthew H. Samore Wendy Webber Chapman Adi V. Gundlapalli Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease. 12 share record
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Xiaoyan Wang George Hripcsak Carol Friedman Characterizing environmental and phenotypic associations using information theory and electronic health records. 13 export record
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Nigam H. Shah Nipun Bhatia Clément Jonquet Daniel L. Rubin Annie P. Chiang Mark A. Musen Comparison of concept recognizers for building the Open Biomedical Annotator. 14 export record
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journals/bmcbi/JinSLKJGL09 share record
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Bo Jin Alvin Strasburger Steven J. Laken F. Andrew Kozel Kevin A. Johnson Mark S. George Xinghua Lu Feature selection for fMRI-based deception detection. 15 export record
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journals/bmcbi/LustgartenVBHG09 share record
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Jonathan L. Lustgarten Shyam Visweswaran Robert P. Bowser William R. Hogan Vanathi Gopalakrishnan Knowledge-based variable selection for learning rules from proteomic data. 16 export record
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Pavithra Shivakumar Michael Krauthammer Structural similarity assessment for drug sensitivity prediction in cancer. 17 Volume 10, Number S-10, 2009 Semantic Web Applications and Tools for Life Sciences, 2008
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Albert Burger Paolo Romano Adrian Paschke Andrea Splendiani Semantic Web Applications and Tools for Life Sciences, 2008 - Introduction. 1 export record
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journals/bmcbi/McCuskerPBFK09 share record
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Jamie P. McCusker Joshua A. Phillips Alejandra N. González-Beltrán Anthony Finkelstein Michael Krauthammer Semantic web data warehousing for caGrid. 2 share record
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Nadia Anwar Ela Hunt Francisella tularensis novicida proteomic and transcriptomic data integration and annotation based on semantic web technologies.3 export record
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journals/bmcbi/Jimeno-YepesJLR09 share record
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Antonio Jimeno-Yepes Ernesto Jiménez-Ruiz Rafael Berlanga Llavori Dietrich Rebholz-Schuhmann Reuse of terminological resources for efficient ontological engineering in Life Sciences. 4 export record
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journals/bmcbi/GarciaDKCMM09 share record
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María del Mar Roldán García Ismael Navas-Delgado Amine Kerzazi Othmane Chniber Joaquin J. Molina-Castro José Francisco Aldana Montes KA-SB: from data integration to large scale reasoning. 5 share record
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George Zheng Athman Bouguettaya Service-based analysis of biological pathways. 6 share record
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Heiko Dietze Michael Schroeder GoWeb: a semantic search engine for the life science web. 7 export record
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Anna-Lena Lamprecht Tiziana Margaria Bernhard Steffen Bio-jETI: a framework for semantics-based service composition. 8 export record
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journals/bmcbi/RoosMGSMKHKA09 share record
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Marco Roos M. Scott Marshall Andrew P. Gibson Martijn J. Schuemie Edgar Meij Sophia Katrenko Willem Robert van Hage Konstantinos Krommydas Pieter W. Adriaans Structuring and extracting knowledge for the support of hypothesis generation in molecular biology. 9 export record
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journals/bmcbi/CheungFMPSZP09 share record
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Kei-Hoi Cheung H. Robert Frost M. Scott Marshall Eric Prud'hommeaux Matthias Samwald Jun Zhao Adrian Paschke A journey to Semantic Web query federation in the life sciences. 10 export record
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journals/bmcbi/AntezanaBERSBMK09 share record
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Erick Antezana Ward Blondé Mikel Egaña Alistair Rutherford Robert Stevens Bernard De Baets Vladimir Mironov Martin Kuiper BioGateway: a semantic systems biology tool for the life sciences. 11 export record
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journals/bmcbi/SutherlandMFB09 share record
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Karen Sutherland Kenneth McLeod Gus Ferguson Albert Burger Knowledge-driven enhancements for task composition in bioinformatics. 12 export record
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journals/bmcbi/Minarro-GimenezMF09 share record
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José Antonio Miñarro-Giménez Marisa Madrid Jesualdo Tomás Fernández-Breis OGO: an ontological approach for integrating knowledge about orthology. 13 export record
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journals/bmcbi/OliverDQAHKSJKSJM09 share record
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Helen Oliver Gayo Diallo Ed de Quincey Dimitra Alexopoulou Bianca Habermann Patty Kostkova Michael Schroeder Simon Jupp Khaled Khelif Robert Stevens Gawesh Jawaheer Gemma Madle A user-centred evaluation framework for the Sealife semantic web browsers. 14 Volume 10, Number S-11, 2009 Proceedings of the Sixth Annual MCBIOS Conference. Transformational Bioinformatics:Delivering Value from Genomes
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journals/bmcbi/WrenGIBBWB09 share record
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Jonathan D. Wren Yuriy Gusev Raphael D. Isokpehi Daniel Berleant Ulisses M. Braga-Neto Dawn Wilkins Susan Bridges Proceedings of the 2009 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. 1 export record
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journals/bmcbi/BuzaKGBM09 share record
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Teresia J. Buza Ranjit Kumar Cathy R. Gresham Shane C. Burgess Fiona M. McCarthy Facilitating functional annotation of chicken microarray data. 2 export record
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journals/bmcbi/XuZHZYRSSYGSDSBBCHLDSY09 share record
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Zhanyou Xu Dandan Zhang Jun Hu Xin Zhou Xia Ye Kristen L. Reichel Nathan R. Stewart Ryan D. Syrenne Xiaohan Yang Peng Gao Weibing Shi Crissa Doeppke Robert W. Sykes Jason N. Burris Joseph J. Bozell (Max) Zong-Ming Cheng Douglas G. Hayes Nicole Labbe Mark Davis C. Neal Stewart Jr. Joshua S. Yuan Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom. 3 export record
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journals/bmcbi/PerkinsL09 share record
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Andy D. Perkins Michael A. Langston Threshold selection in gene co-expression networks using spectral graph theory techniques. 4 export record
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journals/bmcbi/ChowbinaWZLPKC09 share record
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Sudhir R. Chowbina Xiaogang Wu Fan Zhang Peter M. Li Ragini Pandey Harini N. Kasamsetty Jake Y. Chen HPD: an online integrated human pathway database enabling systems biology studies. 5 share record
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Andrey A. Ptitsyn Computational analysis of gene expression space associated with metastatic cancer. 6 export record
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journals/bmcbi/Jankun-KellyLB09 share record
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T. J. Jankun-Kelly Andrew D. Lindeman Susan M. Bridges Exploratory visual analysis of conserved domains on multiple sequence alignments. 7 export record
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journals/bmcbi/BrightBCSM09 share record
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Lauren A. Bright Shane C. Burgess Bhanu Chowdhary Cyprianna E. Swiderski Fiona M. McCarthy Structural and functional-annotation of an equine whole genome oligoarray. 8 share record
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Bart H. J. van den Berg Chamali Thanthiriwatte Prashanti Manda Susan M. Bridges Comparing gene annotation enrichment tools for functional modeling of agricultural microarray data. 9 export record
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journals/bmcbi/ZollanvariCBD09 share record
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Amin Zollanvari Mary Jane Cunningham Ulisses M. Braga-Neto Edward R. Dougherty Analysis and modeling of time-course gene-expression profiles from nanomaterial-exposed primary human epidermal keratinocytes. 10 export record
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journals/bmcbi/Garcia-ReyeroAMLD09 share record
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Natàlia Garcia-Reyero Ira R. Adelman Dalma Martinovic Li Liu Nancy D. Denslow Site-specific impacts on gene expression and behavior in fathead minnows (Pimephales promelas ) exposedin situ to streams adjacent to sewage treatment plants. 11 share record
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Zhiguang Li Zhenqiang Su Zhining Wen Leming M. Shi Tao Chen Microarray platform consistency is revealed by biologically functional analysis of gene expression profiles. 12 share record
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Mutlu Mete Leah Hennings Horace J. Spencer III Umit Topaloglu Automatic identification of angiogenesis in double stained images of liver tissue. 13 export record
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journals/bmcbi/ChavanBSN09 share record
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Shweta S. Chavan Michael A. Bauer Marco Scutari Radhakrishnan Nagarajan NATbox: a network analysis toolbox in R. 14 share record
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Bernard Chen Matthew Johnson Protein local 3D structure prediction by Super Granule Support Vector Machines (Super GSVM). 15 export record
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journals/bmcbi/ZhouSSPTSY09 share record
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Xin Zhou Zhen Su R. Douglas Sammons Yanhui Peng Patrick J. Tranel C. Neal Stewart Jr. Joshua S. Yuan Novel software package for cross-platform transcriptome analysis (CPTRA). 16 export record
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journals/bmcbi/PendarvisKBN09 share record
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Ken Pendarvis Ranjit Kumar Shane C. Burgess Bindu Nanduri An automated proteomic data analysis workflow for mass spectrometry. 17 export record
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journals/bmcbi/ZhangBDCW09 share record
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Lifeng Zhang Daniel Berleant Jing Ding Tuan Cao Eve Syrkin Wurtele PathBinder - text empirics and automatic extraction of biomolecular interactions. 18 share record
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Cuilan Gao Xin Dang Yixin Chen Dawn Wilkins Graph ranking for exploratory gene data analysis. 19 export record
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journals/bmcbi/MalonePB09 share record
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Brandon M. Malone Andy D. Perkins Susan M. Bridges Integrating phenotype and gene expression data for predicting gene function. 20 Volume 10, Number S-12, 2009 Bioinformatics Methods for Biomedical Complex System Applications
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journals/bmcbi/MilanesiRCRL09 share record
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Luciano Milanesi Paolo Romano Gastone C. Castellani Daniel Remondini Pietro Liò Trends in modeling Biomedical Complex Systems. 0 export record
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journals/bmcbi/BalestrieriAVC09 share record
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Chiara Balestrieri Lilia Alberghina Marco Vanoni Ferdinando Chiaradonna Data recovery and integration from public databases uncovers transformation-specific transcriptional downregulation of cAMP-PKA pathway-encoding genes. 1 export record
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journals/bmcbi/MerelliCSCML09 share record
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Ivan Merelli Andrea Caprera Alessandra Stella Marcello Del Corvo Luciano Milanesi Barbara Lazzari The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections. 2 export record
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journals/bmcbi/ChiapporiDMMR09 share record
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Federica Chiappori Pasqualina D'Ursi Ivan Merelli Luciano Milanesi Ermanna Rovida In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study. 3 export record
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journals/bmcbi/MenolascinaBMBCPT09 share record
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Filippo Menolascina Domenico Bellomo Thomas Maiwald Vitoantonio Bevilacqua Caterina Ciminelli Angelo Paradiso Stefania Tommasi Developing optimal input design strategies in cancer systems biology with applications to microfluidic device engineering. 4 share record
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Angelo Nuzzo Alberto Riva Riccardo Bellazzi Phenotypic and genotypic data integration and exploration through a web-service architecture. 5 export record
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journals/bmcbi/SchwarzLBL09 share record
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Emanuel Schwarz F. Markus Leweke Sabine Bahn Pietro Liò Clinical bioinformatics for complex disorders: a schizophrenia case study. 6 export record
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journals/bmcbi/MesitiJSLPVM09 share record
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Marco Mesiti Ernesto Jiménez-Ruiz Ismael Sanz Rafael Berlanga Llavori Paolo Perlasca Giorgio Valentini David Manset XML-based approaches for the integration of heterogeneous bio-molecular data. 7 export record
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journals/bmcbi/MoscaBPVRZM09 share record
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Ettore Mosca Gloria Bertoli Eleonora Piscitelli Laura Vilardo Rolland A. Reinbold Ileana Zucchi Luciano Milanesi Identification of functionally related genes using data mining and data integration: a breast cancer case study. 8 export record
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journals/bmcbi/CeccarellidF09 share record
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Michele Ceccarelli Antonio d'Acierno Angelo M. Facchiano A scale space approach for unsupervised feature selection in mass spectra classification for ovarian cancer detection. 9 export record
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journals/bmcbi/CorradiMPTFRP09 share record
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Luca Corradi Valentina Mirisola Ivan Porro Livia Torterolo Marco Fato Paolo Romano Ulrich Pfeffer Survival Online: a web-based service for the analysis of correlations between gene expression and clinical and follow-up data. 10 export record
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journals/bmcbi/TiengoBTRM09 share record
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Alessandra Tiengo Nicola Barbarini Sonia Troiani Luisa Rusconi Paolo Magni A Perl procedure for protein identification by Peptide Mass Fingerprinting. 11 export record
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journals/bmcbi/CantarellaSFFP09 share record
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Concita Cantarella Leandra Sepe Francesca Fioretti Maria Carla Ferrari Giovanni Paolella Analysis and modelling of motility of cell populations with MotoCell. 12 export record
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journals/bmcbi/StefaniniCB09 share record
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Federico M. Stefanini Danila Coradini Elia Biganzoli Conditional independence relations among biological markers may improve clinical decision as in the case of triple negative breast cancers. 13 share record
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Liliana Ironi Luigi Panzeri A computational framework for qualitative simulation of nonlinear dynamical models of gene-regulatory networks. 14 export record
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journals/bmcbi/DAntonioM09 share record
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Matteo D'Antonio Marco Masseroli Extraction, integration and analysis of alternative splicing and protein structure distributed information. 15 export record
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journals/bmcbi/AlfieriBCGMVKA09 share record
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Roberta Alfieri Matteo Barberis Ferdinando Chiaradonna Daniela Gaglio Luciano Milanesi Marco Vanoni Edda Klipp Lilia Alberghina Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation. 16 export record
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journals/bmcbi/Real-ChicharroMDKCSMM09 share record
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Alejandro Real-Chicharro Iván Ruiz Mostazo Ismael Navas-Delgado Amine Kerzazi Othmane Chniber Francisca Sánchez-Jiménez Miguel Angel Medina José Francisco Aldana Montes Protopia: a protein-protein interaction tool. 17 Volume 10, Number S-13, 2009 Highlights from the Fifth International Society for Computational Biology (ISCB) Student Council Symposium
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Thomas Abeel Jeroen de Ridder Lucia Peixoto Highlights from the 5th International Society for Computational Biology Student Council Symposium at the 17th Annual International Conference on Intelligent Systems for Molecular Biology and the 8th European Conference on Computational Biology. 0 export record
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journals/bmcbi/SchultheissBLKR09 share record
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Sebastian J. Schultheiß Wolfgang Busch Jan U. Lohmann Oliver Kohlbacher Gunnar Rätsch KIRMES: kernel-based identification of regulatory modules in euchromatic sequences. 0 share record
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Rayan Chikhi Dominique Lavenier Paired-end read length lower bounds for genome re-sequencing. 0 share record
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T. Van Du Tran Philippe Chassignet Jean-Marc Steyaert Prediction of super-secondary structure in alpha-helical and beta-barrel transmembrane proteins. 0 share record
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Martina Koeva E. Camilla Forsberg Joshua M. Stuart Core stemness mechanisms revealed through homology. 0 share record
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Phil Hyoun Lee Jae-Yoon Jung Hagit Shatkay Functionally informative tag SNP selection using a pareto-optimal approach: playing the game of life. 0 export record
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journals/bmcbi/SzczepinskaP09 share record
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Teresa Szczepinska Krzysztof Pawlowski Looking for chromosome spatial organization rules in microarray gene expression data. 0 export record
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journals/bmcbi/GehlenborgB09 share record
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Nils Gehlenborg Alvis Brazma Visualization of large microarray experiments with space maps. 0 export record
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José Caldas Nils Gehlenborg Ali Faisal Alvis Brazma Samuel Kaski Probabilistic retrieval and visualization of biologically relevant microarray experiments. 0 export record
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journals/bmcbi/WohlersPDK09 share record
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Inken Wohlers Lars Petzold Francisco S. Domingues Gunnar W. Klau PAUL: protein structural alignment using integer linear programming and Lagrangian relaxation. 0 export record
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journals/bmcbi/SamusikKZ09 share record
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Nikolay Samusik Yannis Kalaidzidis Marino Zerial A method for validation for clustering of phenotypic gene knockdown profiles using protein-protein interactions information. 0 export record
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Tom A. Williams Brian E. Caffrey Xiaowei Jiang Christina Toft Mario A. Fares Phylogenomic inference of functional divergence. 0 export record
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Regina Bohnert Jonas Behr Gunnar Rätsch Transcript quantification with RNA-Seq data. 0 export record
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Walter Pirovano Anneke van der Reijden K. Anton Feenstra Jaap Heringa Structure and function analysis of flexible alignment regions in proteins. 0 export record
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Tanya C. Petrossian Steven G. Clarke Computational methods to identify novel methyltransferases. 0 Volume 10, Number S-14, 2009 Biodiversity Informatics
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Indra Neil Sarkar Biodiversity Informatics: the emergence of a field. 1 share record
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Vishwas Chavan Peter Ingwersen Towards a data publishing framework for primary biodiversity data: challenges and potentials for the biodiversity informatics community. 2 export record
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Andrew W. Hill Robert P. Guralnick Paul Flemons Reed Beaman John Wieczorek Ajay Ranipeta Vishwas Chavan David P. Remsen Location, location, location: utilizing pipelines and services to more effectively georeference the world's biodiversity data. 3 export record
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Mehrdad Hajibabaei Gregory A. C. Singer Googling DNA sequences on the World Wide Web. 4 share record
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Roderic D. M. Page bioGUID: resolving, discovering, and minting identifiers for biodiversity informatics. 5 export record
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Vincent S. Smith Simon D. Rycroft Kehan T. Harman Ben Scott David Roberts Scratchpads: a data-publishing framework to build, share and manage information on the diversity of life. 6 export record
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Paola Bertolazzi Giovanni Felici Emanuel Weitschek Learning to classify species with barcodes. 7 share record
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Ka Hou Chu Minli Xu Chi Pang Li Rapid DNA barcoding analysis of large datasets using the composition vector method. 8 share record
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Pavel P. Kuksa Vladimir Pavlovic Efficient alignment-free DNA barcode analytics. 9 export record
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Frederic Austerlitz Olivier David Brigitte Schaeffer Kevin Bleakley Madalina Olteanu Raphaël Leblois Michel Veuille Catherine Larédo DNA barcode analysis: a comparison of phylogenetic and statistical classification methods. 10 Volume 10, Number S-15, 2009 Eighth International Conference on Bioinformatics (InCoB2009):Bioinformatics
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Shoba Ranganathan Towards a career in bioinformatics. 1 share record
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Khar Heng Choo Tin Wee Tan Shoba Ranganathan A comprehensive assessment of N-terminal signal peptides prediction methods. 2 export record
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Woo-Yeon Kim Sang-Yoon Kim Tae-Hyung Kim Sung-Min Ahn Ha Na Byun Deokhoon Kim Dae-Soo Kim Yong Seok Lee Ho Ghang Daeui Park Byoung-Chul Kim Chulhong Kim Sunghoon Lee Seong-Jin Kim Jong Bhak Gevab: a prototype genome variation analysis browsing server. 3 export record
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Merlin Veronika James Evans Paul Matsudaira Roy E. Welsch Jagath C. Rajapakse Sub-population analysis based on temporal features of high content images. 4 share record
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Byungwook Lee Doheon Lee Protein comparison at the domain architecture level. 5 export record
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Shubhra Ghosh Dastidar David P. Lane Chandra S. Verma Modulation of p53 binding to MDM2: computational studies reveal important roles of Tyr100. 6 share record
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Cheng-Ju Kuo Maurice H. T. Ling Kuan-Ting Lin Chun-Nan Hsu BIOADI: a machine learning approach to identifying abbreviations and definitions in biological literature. 7 share record
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Hsin-Nan Lin Ching-Tai Chen Ting-Yi Sung Shinn-Ying Ho Wen-Lian Hsu Protein subcellular localization prediction of eukaryotes using a knowledge-based approach. 8 export record
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Richard Tzong-Han Tsai Po-Ting Lai Hong-Jie Dai Chi-Hsin Huang Yue-Yang Bow Yen-Ching Chang Wen-Harn Pan Wen-Lian Hsu HypertenGene: extracting key hypertension genes from biomedical literature with position and automatically-generated template features. 9 share record
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Varun Khanna Shoba Ranganathan Physicochemical property space distribution among human metabolites, drugs and toxins. 10 export record
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In-Hwan Paik Jeongheui Lim Byung-Sun Chun Seon-Duck Jin Jae-Pyoung Yu Joon-Woo Lee Jong Bhak Woon Kee Paek The Korean Bird Information System (KBIS) through open and public participation. 11 export record
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Shen Jean Lim Asif Mohammad Khan Mark De Silva Kuan Siong Lim Yongli Hu Chay Hoon Tan Tin Wee Tan The implementation of e-learning tools to enhance undergraduate bioinformatics teaching and learning: a case study in the National University of Singapore. 12 manage site settings
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