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IncidencePrevalence: Estimate Incidence and Prevalence using the OMOP Common DataModel

Calculate incidence and prevalence using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Incidence and prevalence can be estimated for the total population in a database or for a stratification cohort.

Version:1.2.1
Depends:R (≥ 4.1)
Imports:CDMConnector (≥ 2.0.0),cli (≥ 3.0.0),clock,dplyr (≥1.1.0),glue (≥ 1.5.0),omopgenerics (≥ 1.1.0),magrittr (≥2.0.0),PatientProfiles (≥ 1.3.1),purrr (≥ 0.3.5),rlang (≥1.0.0),stringr (≥ 1.5.0),tidyr (≥ 1.2.0)
Suggests:knitr,dbplyr,rmarkdown,RPostgres,duckdb (≥ 1.0.0),DBI (≥ 1.0.0),odbc,here,Hmisc,epitools,tictoc,testthat (≥0.3.1),spelling,gt,flextable,ggplot2 (≥ 3.4.0),scales (≥1.1.0),visOmopResults (≥ 1.0.2),patchwork,binom
Published:2025-07-22
DOI:10.32614/CRAN.package.IncidencePrevalence
Author:Edward BurnORCID iD [aut, cre], Berta RaventosORCID iD [aut], Martí CatalàORCID iD [aut], Mike DuORCID iD [ctb], Yuchen GuoORCID iD [ctb], Adam BlackORCID iD [ctb], Ger InbergORCID iD [ctb], Kim LopezORCID iD [ctb]
Maintainer:Edward Burn <edward.burn at ndorms.ox.ac.uk>
BugReports:https://github.com/darwin-eu/IncidencePrevalence/issues
License:Apache License (≥ 2)
URL:https://darwin-eu.github.io/IncidencePrevalence/
NeedsCompilation:no
Language:en-US
Citation:IncidencePrevalence citation info
Materials:README,NEWS
CRAN checks:IncidencePrevalence results

Documentation:

Reference manual:IncidencePrevalence.html ,IncidencePrevalence.pdf
Vignettes:a01_Introduction_to_IncidencePrevalence (source,R code)
a02_Creating_denominator_cohorts (source,R code)
a03_Creating_target_denominator_populations (source,R code)
a04_Calculating_prevalence (source,R code)
a05_Calculating_incidence (source,R code)
a06_Working_with_IncidencePrevalence_Results (source,R code)
a07_benchmark (source,R code)

Downloads:

Package source: IncidencePrevalence_1.2.1.tar.gz
Windows binaries: r-devel:IncidencePrevalence_1.2.1.zip, r-release:IncidencePrevalence_1.2.1.zip, r-oldrel:IncidencePrevalence_1.2.1.zip
macOS binaries: r-release (arm64):IncidencePrevalence_1.2.1.tgz, r-oldrel (arm64):IncidencePrevalence_1.2.1.tgz, r-release (x86_64):IncidencePrevalence_1.2.1.tgz, r-oldrel (x86_64):IncidencePrevalence_1.2.1.tgz
Old sources: IncidencePrevalence archive

Reverse dependencies:

Reverse imports:PhenotypeR
Reverse suggests:CohortConstructor,OmopViewer,visOmopResults

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=IncidencePrevalenceto link to this page.


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