A fast, scalable, and versatile framework for simulating large systems with Gillespie's Stochastic Simulation Algorithm ('SSA'). This package is the spiritual successor to the 'GillespieSSA' package originally written by Mario Pineda-Krch. Benefits of this package include major speed improvements (>100x), easier to understand documentation, and many unit tests that try to ensure the package works as intended. Cannoodt and Saelens et al. (2021) <doi:10.1038/s41467-021-24152-2>.
| Version: | 0.3.0 |
| Depends: | R (≥ 3.3) |
| Imports: | assertthat,dplyr,dynutils,Matrix, methods,purrr,Rcpp (≥0.12.3),RcppXPtrUtils,readr,rlang,stringr,tidyr |
| LinkingTo: | Rcpp |
| Suggests: | covr,ggplot2,GillespieSSA,knitr,rmarkdown,testthat (≥2.1.0) |
| Published: | 2023-01-23 |
| DOI: | 10.32614/CRAN.package.GillespieSSA2 |
| Author: | Robrecht Cannoodt [aut, cre], Wouter Saelens [aut] |
| Maintainer: | Robrecht Cannoodt <rcannood at gmail.com> |
| BugReports: | https://github.com/rcannood/GillespieSSA2/issues |
| License: | GPL (≥ 3) |
| URL: | https://rcannood.github.io/GillespieSSA2/,https://github.com/rcannood/GillespieSSA2 |
| NeedsCompilation: | yes |
| Citation: | GillespieSSA2 citation info |
| Materials: | README,NEWS |
| CRAN checks: | GillespieSSA2 results |