CBASSED50: Process CBASS-Derived PAM Data
Tools to process CBASS-derived PAM data efficiently. Minimal requirements are PAM-based photosynthetic efficiency data (or data from any other continuous variable that changes with temperature, e.g. relative bleaching scores) from 4 coral samples (nubbins) subjected to 4 temperature profiles of at least 2 colonies from 1 coral species from 1 site. Please refer to the following CBASS (Coral Bleaching Automated Stress System) papers for in-depth information regarding CBASS acute thermal stress assays, experimental design considerations, and ED5/ED50/ED95 thermal parameters: Nicolas R. Evensen et al. (2023) <doi:10.1002/lom3.10555> Christian R. Voolstra et al. (2020) <doi:10.1111/gcb.15148> Christian R. Voolstra et al. (2025) <doi:10.1146/annurev-marine-032223-024511>.
| Version: | 0.2.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | drc,rlog, stats, utils,dplyr,ggplot2,readxl,glue |
| Suggests: | testthat (≥ 3.0.0) |
| Published: | 2025-06-06 |
| DOI: | 10.32614/CRAN.package.CBASSED50 |
| Author: | Yulia Iakovleva [aut], Luigi Colin [aut, cre], Christian Robert Voolstra [aut] |
| Maintainer: | Luigi Colin <reefgenomics at gmail.com> |
| License: | MIT + fileLICENSE |
| NeedsCompilation: | no |
| CRAN checks: | CBASSED50 results |
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