bioregion: Comparison of Bioregionalization Methods
The main purpose of this package is to propose a transparent methodological framework to compare bioregionalization methods based on hierarchical and non-hierarchical clustering algorithms (Kreft & Jetz (2010) <doi:10.1111/j.1365-2699.2010.02375.x>) and network algorithms (Lenormand et al. (2019) <doi:10.1002/ece3.4718> and Leroy et al. (2019) <doi:10.1111/jbi.13674>).
| Version: | 1.3.0 |
| Depends: | R (≥ 4.0.0) |
| Imports: | ape,apcluster,bipartite,cluster,data.table,dbscan,dynamicTreeCut,fastcluster,fastkmedoids,ggplot2, grDevices,httr,igraph,mathjaxr,Matrix,phangorn,rcartocolor,Rdpack,rlang,rmarkdown,segmented,sf, stats,tidyr, utils |
| LinkingTo: | Rcpp |
| Suggests: | ade4,adespatial,betapart,dplyr,ecodist,knitr,microbenchmark,rnaturalearth,rnaturalearthdata,testthat (≥3.0.0),vegan |
| Published: | 2026-01-23 |
| DOI: | 10.32614/CRAN.package.bioregion |
| Author: | Maxime Lenormand [aut, cre], Boris Leroy [aut], Pierre Denelle [aut] |
| Maintainer: | Maxime Lenormand <maxime.lenormand at inrae.fr> |
| BugReports: | https://github.com/bioRgeo/bioregion/issues |
| License: | GPL-3 |
| URL: | https://github.com/bioRgeo/bioregion,https://bioRgeo.github.io/bioregion/ |
| NeedsCompilation: | yes |
| Citation: | bioregion citation info |
| CRAN checks: | bioregion results |
Documentation:
| Reference manual: | bioregion.html ,bioregion.pdf |
| Vignettes: | 5.2 Summary metrics (source,R code) 5.3 Compare bioregionalizations (source,R code) Tutorial for bioregion (source,R code) Citing articles (source) |
Downloads:
| Package source: | bioregion_1.3.0.tar.gz |
| Windows binaries: | r-devel:bioregion_1.3.0.zip, r-release:bioregion_1.3.0.zip, r-oldrel:bioregion_1.3.0.zip |
| macOS binaries: | r-release (arm64):bioregion_1.2.0.tgz, r-oldrel (arm64):bioregion_1.2.0.tgz, r-release (x86_64):bioregion_1.3.0.tgz, r-oldrel (x86_64):bioregion_1.3.0.tgz |
| Old sources: | bioregion archive |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=bioregionto link to this page.