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RSpectra: Solvers for Large-Scale Eigenvalue and SVD Problems

R interface to the 'Spectra' library <https://spectralib.org/> for large-scale eigenvalue and SVD problems. It is typically used to compute a few eigenvalues/vectors of an n by n matrix, e.g., the k largest eigenvalues, which is usually more efficient than eigen() if k << n. This package provides the 'eigs()' function that does the similar job as in 'Matlab', 'Octave', 'Python SciPy' and 'Julia'. It also provides the 'svds()' function to calculate the largest k singular values and corresponding singular vectors of a real matrix. The matrix to be computed on can be dense, sparse, or in the form of an operator defined by the user.

Version:0.16-2
Depends:R (≥ 3.0.2)
Imports:Matrix (≥ 1.1-0),Rcpp (≥ 0.11.5)
LinkingTo:Rcpp,RcppEigen (≥ 0.3.3.3.0)
Suggests:knitr,rmarkdown,prettydoc
Published:2024-07-18
DOI:10.32614/CRAN.package.RSpectra
Author:Yixuan Qiu [aut, cre], Jiali Mei [aut] (Function interface of matrix operation), Gael Guennebaud [ctb] (Eigenvalue solvers from the 'Eigen' library), Jitse Niesen [ctb] (Eigenvalue solvers from the 'Eigen' library)
Maintainer:Yixuan Qiu <yixuan.qiu at cos.name>
BugReports:https://github.com/yixuan/RSpectra/issues
License:MPL (≥ 2)
URL:https://github.com/yixuan/RSpectra
NeedsCompilation:yes
Materials:READMENEWS
In views:NumericalMathematics
CRAN checks:RSpectra results

Documentation:

Reference manual: RSpectra.pdf
Vignettes:Large-Scale Eigenvalue Decomposition and SVD with RSpectra (source,R code)

Downloads:

Package source: RSpectra_0.16-2.tar.gz
Windows binaries: r-devel:RSpectra_0.16-2.zip, r-release:RSpectra_0.16-2.zip, r-oldrel:RSpectra_0.16-2.zip
macOS binaries: r-devel (arm64):RSpectra_0.16-2.tgz, r-release (arm64):RSpectra_0.16-2.tgz, r-oldrel (arm64):RSpectra_0.16-2.tgz, r-devel (x86_64):RSpectra_0.16-2.tgz, r-release (x86_64):RSpectra_0.16-2.tgz, r-oldrel (x86_64):RSpectra_0.16-2.tgz
Old sources: RSpectra archive

Reverse dependencies:

Reverse depends:BioNAR,fad,onlinePCA,pPCA,SKAT,SmartSVA
Reverse imports:APL,bamm,bigstatsr,bigutilsr,blapsr,bspcov,castor,ClimMobTools,cvCovEst,ddpca,destiny,dtwclust,fase,fastadi,fastRG,filling,funcharts,fungible,fuser,gasper,GhostKnockoff,Gmedian,greed,gsbm,HCD,HDANOVA,HDMFA,HiContacts,Holomics,HyperG,IALS,ideanet,ILoReg,kbal,knockoff,KOFM,lfa,lfmm,locStra,LSX,maotai,markerpen,MatrixCorrelation,mina,miRNAss,missSBM,motifcluster,multiblock,multiness,multivarious,NetworkDistance,NetworkReg,nipalsMCIA,OLCPM,OPTtesting,pcadapt,phylter,PlackettLuce,qlcVisualize,quanteda.textmodels,rags2ridges,rainette,randnet,rARPACK,Rdimtools,Rfssa,RGMM,rhype,RMLPCA,RobRegression,ScorePlus,scPCA,scTenifoldKnk,scTenifoldNet,SDPDmod,Seurat,SGCP,sgdGMF,SIMLR,SISIR,smartsnp,sparsegl,sparseLRMatrix,SpectralClMixed,SplitKnockoff,tall,textmineR,TopicScore,ubms,umap,uSORT,uwot,veloviz,Vicus,Voyager,vsp,wordvector
Reverse linking to:autoFRK,fad,Gmedian,markerpen,oem,WpProj
Reverse suggests:bigsnpr,butcher,celltrackR,countland,epca,FactorHet,ggmix,hydra,InspectChangepoint,lme4breeding,nett,recipes,redist,rSPDE,Rssa,sommer,spaMM,spatialreg,spdep,treestats,yacca

Linking:

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