2010. Thorne, R. F, R. V. Moran and R. A. Minnich. 2010. Vascular plants of the high Sierra San Pedro Mártir, Baja California, Mexico: an annotated checklist. Aliso (28): 1–57.
In press. Krantz, T. P. and R. F. Thorne. An annotated flora of the vascular plants of the San Bernardino Mountains, San Bernardino Co., CA. Aliso.
2007. Thorne, R. F. and J. L. Reveal. An updated classification of the Class Magnoliopsida ("Angiospermae"). Botanical Review 73(2): 67–182.
2007. Thorne, R. F. et al. Transmontane coniferous vegetation, pp. 575–586. In M. G. Barbour. T. Keeler.-Wolf and A. A. Schoenherr [eds.],Terrestrial Vegetation of California, 3rd ed., University of California Press, Berkeley, CA.
2006. Thorne, R. F. A bibliography of floristics in southern California: addendum number 2A. Crossosoma 31(2), Fall–Winter 2005 (issued 2006).
2002. Thorne, R. F. How many species of seed plants are there? Taxon 51: 511–512.
2001. Thorne, R. F. The classification and geography of the flowering plants: dicotyledons of the class Angiospermae (subclasses Magnoliidae, Ranunculidae, Caryophyllidae, Dilleniidae, Rosidae, Asteridae, and Lamiidae). Botanical Revue 66(4): 44l–647.
2000. Thorne, R. F. The classification and geography of the monocotyledon subclasses Alismatidae, Liliidae and Commelinidae, pp. 75–124. In B. Nordenstam, G. E-Ghazaly, and M. Kassas [eds.], Plant Systematics for the 21st Century. Portland Press, London, UK.
1999. Thorne, R. F. Eastern Asia as a living museum for archaic angiosperms and other seed plants. Taiwania 44(4): 413–422.
1995. Thorne, R. F. Vascular plants of Fort DeSoto Park, Pinellas County, Florida. Selbyana 16(1): 100–109.
1986. Thorne, R. F. Antarctic elements in Australasian rainforests. Telopea 2(6): 611–617.[2]
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