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Created on2019-03-02 23:04 byrhettinger, last changed2022-04-11 14:59 byadmin. This issue is nowclosed.
| Pull Requests | |||
|---|---|---|---|
| URL | Status | Linked | Edit |
| PR 12149 | merged | rhettinger,2019-03-03 21:58 | |
| Messages (3) | |||
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| msg337020 -(view) | Author: Raymond Hettinger (rhettinger)*![]() | Date: 2019-03-02 23:04 | |
------ How to use it ------What percentage of men and women will have the same height in two normally distributed populations with known means and standard deviations? #http://www.usablestats.com/lessons/normal >>> men = NormalDist(70, 4) >>> women = NormalDist(65, 3.5) >>> men.overlap(women) 0.5028719270195425The result can be confirmed empirically with a Monte Carlo simulation: >>> from collections import Counter >>> n = 100_000 >>> overlap = Counter(map(round, men.samples(n))) & Counter(map(round, women.samples(n))) >>> sum(overlap.values()) / n 0.50349The result can also be confirmed by numeric integration of the probability density function: >>> dx = 0.10 >>> heights = [h * dx for h in range(500, 860)] >>> sum(min(men.pdf(h), women.pdf(h)) for h in heights) * dx 0.5028920586287203------ Code ------ def overlap(self, other): '''Compute the overlap coefficient (OVL) between two normal distributions. Measures the agreement between two normal probability distributions. Returns a value between 0.0 and 1.0 giving the overlapping area in the two underlying probability density functions. ''' # See: "The overlapping coefficient as a measure of agreement between # probability distributions and point estimation of the overlap of two # normal densities" -- Henry F. Inman and Edwin L. Bradley Jr #http://dx.doi.org/10.1080/03610928908830127 # Also see: #http://www.iceaaonline.com/ready/wp-content/uploads/2014/06/MM-9-Presentation-Meet-the-Overlapping-Coefficient-A-Measure-for-Elevator-Speeches.pdf if not isinstance(other, NormalDist): return NotImplemented X, Y = self, other X_var, Y_var = X.variance, Y.variance if not X_var or not Y_var: raise StatisticsError('overlap() not defined when sigma is zero') dv = Y_var - X_var if not dv: return 2.0 * NormalDist(fabs(Y.mu - X.mu), 2.0 * X.sigma).cdf(0) a = X.mu * Y_var - Y.mu * X_var b = X.sigma * Y.sigma * sqrt((X.mu - Y.mu)**2 + dv * log(Y_var / X_var)) x1 = (a + b) / dv x2 = (a - b) / dv return 1.0 - (fabs(Y.cdf(x1) - X.cdf(x1)) + fabs(Y.cdf(x2) - X.cdf(x2)))---- Future ----The concept of an overlap coefficient (OVL) is not specific to normal distributions, so it is possible to extend this idea to work with other distributions if needed. | |||
| msg337026 -(view) | Author: Raymond Hettinger (rhettinger)*![]() | Date: 2019-03-03 06:16 | |
Another cross-check can be had with this nomogram:https://www.rasch.org/rmt/rmt101r.htm | |||
| msg337367 -(view) | Author: Raymond Hettinger (rhettinger)*![]() | Date: 2019-03-07 06:59 | |
New changeset318d537daabf2bd5f781255c7e25bfce260cf227 by Raymond Hettinger in branch 'master':bpo-36169 : Add overlap() method to statistics.NormalDist (GH-12149)https://github.com/python/cpython/commit/318d537daabf2bd5f781255c7e25bfce260cf227 | |||
| History | |||
|---|---|---|---|
| Date | User | Action | Args |
| 2022-04-11 14:59:11 | admin | set | github: 80350 |
| 2019-03-07 07:00:03 | rhettinger | set | status: open -> closed resolution: fixed stage: patch review -> resolved |
| 2019-03-07 06:59:43 | rhettinger | set | messages: +msg337367 |
| 2019-03-03 21:58:37 | rhettinger | set | keywords: +patch stage: patch review pull_requests: +pull_request12149 |
| 2019-03-03 06:16:31 | rhettinger | set | messages: +msg337026 |
| 2019-03-02 23:04:32 | rhettinger | create | |