xenLite
This is thereleased version of xenLite; for the devel version, seexenLite.
Simple classes and methods for managing Xenium datasets
Bioconductor version: Release (3.22)
Define a relatively light class for managing Xenium data using Bioconductor. Address use of parquet for coordinates, SpatialExperiment for assay and sample data. Address serialization and use of cloud storage.
Author: Vincent Carey [aut, cre]
ORCID: 0000-0003-4046-0063
Maintainer: Vincent Carey <stvjc at channing.harvard.edu>
citation("xenLite")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("xenLite")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("xenLite")| xenLite: exploration of a class for Xenium demonstration data | HTML | R Script |
| Reference Manual |
Details
| biocViews | Infrastructure,Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.20 (R-4.4) (1 year) |
| License | Artistic-2.0 |
| Depends | R (>= 4.1) |
| Imports | SpatialExperiment,BiocFileCache,Matrix,S4Vectors,SummarizedExperiment, methods, utils,EBImage,shiny,HDF5Array,arrow,ggplot2,SingleCellExperiment,TENxIO,dplyr, graphics, stats |
| System Requirements | |
| URL | https://github.com/vjcitn/xenLite |
| Bug Reports | https://github.com/vjcitn/xenLite/issues |
See More
| Suggests | knitr,testthat,BiocStyle,yesno,terra,SpatialFeatureExperiment,SFEData,tiff |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | xenLite_1.4.0.tar.gz |
| Windows Binary (x86_64) | xenLite_1.4.0.zip |
| macOS Binary (x86_64) | xenLite_1.4.0.tgz |
| macOS Binary (arm64) | xenLite_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/xenLite |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/xenLite |
| Bioc Package Browser | https://code.bioconductor.org/browse/xenLite/ |
| Package Short Url | https://bioconductor.org/packages/xenLite/ |
| Package Downloads Report | Download Stats |