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randRotation
This is thereleased version of randRotation; for the devel version, seerandRotation.
Random Rotation Methods for High Dimensional Data with Batch Structure
Bioconductor version: Release (3.22)
A collection of methods for performing random rotations on high-dimensional, normally distributed data (e.g. microarray or RNA-seq data) with batch structure. The random rotation approach allows exact testing of dependent test statistics with linear models following arbitrary batch effect correction methods.
Author: Peter Hettegger [aut, cre]
ORCID: 0000-0001-8557-588X
Maintainer: Peter Hettegger <p.hettegger at gmail.com>
citation("randRotation")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("randRotation")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("randRotation")| Random Rotation Package Introduction | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BatchEffect,BiomedicalInformatics,DifferentialExpression,GeneExpression,Genetics,MicroRNAArray,Microarray,Normalization,Preprocessing,RNASeq,Sequencing,Software,StatisticalMethod |
| Version | 1.22.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (5.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | methods, graphics, utils, stats,Rdpack (>= 0.7) |
| System Requirements | |
| URL | https://github.com/phettegger/randRotation |
| Bug Reports | https://github.com/phettegger/randRotation/issues |
See More
| Suggests | knitr,BiocParallel,lme4,nlme,rmarkdown,BiocStyle,testthat (>= 2.1.0),limma,sva |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | randRotation_1.22.0.tar.gz |
| Windows Binary (x86_64) | randRotation_1.22.0.zip |
| macOS Binary (x86_64) | randRotation_1.22.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/randRotation |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/randRotation |
| Bioc Package Browser | https://code.bioconductor.org/browse/randRotation/ |
| Package Short Url | https://bioconductor.org/packages/randRotation/ |
| Package Downloads Report | Download Stats |